mRNA_H-paniculata_contig47271.11750.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47271.11750.1
Unique NamemRNA_H-paniculata_contig47271.11750.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 314 bits (805), Expect = 7.230e-97
Identity = 177/439 (40.32%), Postives = 268/439 (61.05%), Query Frame = 1
Query:    1 VAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRDIPFVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEGGETNLLVAVYVDNLVIAGRRE-KVDEFKHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADKPSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITFGGKSNGHGLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGLS 1314
            VAQGFSQ  G+D+ ET +PVAR  ++RTV +LAA+H  +L  MDV   +LN  +++E++++    F    ++   V R R+S+YGLKQS R WN+ LD  L  +G   +  D C+Y  ++EGGE   ++AVYVD++++AG+ + K++E K  ++++F+MKD G L   LG++V     +  I I Q +Y + VL+R+G +  +   TPV    K+    +AD   +S+    + Y+  VG L+Y ST+TRPDIAYAV   AR   DP +E +   KRI RYL+   D G+ + G        G+ DA+WA D +DRKST+GY F+++  AIS  S+KQ  V  S+ EAEY+A   A +E V+L++LL  +         + EDN++AI ++K    H R KHI +++H IRE +    + L+Y  T + +ADI TKGLS
Sbjct:   50 VAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKEH-LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKK--AAD---DSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLS 480          
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM)

HSP 1 Score: 322 bits (824), Expect = 5.250e-95
Identity = 185/440 (42.05%), Postives = 261/440 (59.32%), Query Frame = 1
Query:    1 VAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRDIPFVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEGGETNLLVAVYVDNLVIAGRR-EKVDEFKHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADKPSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITFGGKSNGHGLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGLSR 1317
            VA+GF+QVEG DF ET APV + ++LRT+ +L A+HD EL  MDV   YLN  +E+E++++ PP F     D   V R  KS+YGLKQ+GR W   ++     +G   S+ D  ++ F  +   T L++ +YVD++  A    E + + K  +S+ F + D G +  +LG+EV  DR    +T+SQ  YI +VL+R+GF + R + TPV    K+    +A+  +        +Y+  VGSLMYA   TRPDIAYAV   ++    P  E ++   R F+YL    D+ + + GK     L G+VD++WA D  DR+S +GY F L G AIS  S+KQ  V  SSTEAEY+AA  A KE V+LR LL  +     R T L  DN+ AI L+K    H  TKHI VR H +R+ + +G +A +Y+ T DQVAD+LTKGLSR
Sbjct:  963 VAKGFTQVEGIDFDETFAPVMKFNSLRTLLALTAKHDLELHQMDVKTAYLNGDLEEEIYMEPPPGFRG---DGNIVWRLIKSIYGLKQAGRVWYMRIEREFRDLGYSRSYADYGVFVFHRDSDGTLLIIIIYVDDIGAASNSMEAILQAKARLSKIFEITDLGEMRWILGMEVTRDRALKIVTLSQKRYIADVLERHGFADARPISTPVSVNQKLEKLPAAEIDAR-------KYQSAVGSLMYAMLGTRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPAYHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADVLTKGLSR 1392          
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 302 bits (774), Expect = 1.220e-94
Identity = 175/441 (39.68%), Postives = 263/441 (59.64%), Query Frame = 1
Query:    1 VAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRDIPFVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEGGETNLLVAVYVDNLVIAGRREKVD-EFKHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADKPSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITFGGKSNGH-GLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGLSR 1317
            VA+GFSQ++G D+ +T APV R  T+R +F++ A  +  +  +DV   YLN  +++ELF++ PP FS  +     V R R+SLYGLKQS R WN    D L  +G   +  D CL F R E   T   V +YVD+L+IAG   ++  +    ++  F +KD G + + LG++V  +  +G+  + Q + +R +LK +G  + + V TP+E     S  + + K  ++      EYR  +GSL+Y +T TRPDI++AV Q  RCME P Q D+   KR+ RYL+  P   + F   +NG   L GFVDA+WA D  DRKST+GY FK+    ++  SRKQ  V  SSTEAEY+AA EA ++ +++R++L  IG      T ++EDN+  I ++++     RTKHI +R+H +RE    GI+AL Y  + +  AD+LTK L++
Sbjct:   45 VARGFSQIQGRDYDKTFAPVVRHETVRILFAVVAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTGGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRSEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREE-DGSFLLYQAAKVRHLLKEHGLLDAKPVATPMEANFLSSTEEESPKLPDNA-----EYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRF--SANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRELQESGIIALTYCPSNEMPADMLTKPLTK 475          
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 307 bits (786), Expect = 1.300e-94
Identity = 174/439 (39.64%), Postives = 265/439 (60.36%), Query Frame = 1
Query:    1 VAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRDIPFVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEGGETNLLVAVYVDNLVIAGRRE-KVDEFKHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADKPSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITFGGKSNGHGLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGLS 1314
            VAQGFSQ  G+D+ ET +PVAR  ++RTV +LAA+H  +L  MDV   +LN  +++E++++ P  F    ++   V R R+S+ GLKQS R WN+ LD  L  +G   +  D C+Y  ++EGGE   ++AVYVD++++AG+ + K++E K  ++++F+MKD G     LG++V     +  I I Q +Y + VL+R+G +  +   TPV    K+    +AD   +S+    + Y+  VG L+Y ST+TRPDIAYAV   AR    P +E +   KRI RYL+   D G+ + G        G+ DA+WA D +DRKST+GY F+++  AIS  S+KQ  V  S+ EAEY+    A +E V+L++LL  +         + EDN++AI ++K    H R KHI +++H IRE +    + L+Y  T + +ADI TKGLS
Sbjct:  198 VAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEH-LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKK--AAD---DSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLS 628          
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: A0A6G0X2D0_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2D0_9STRA)

HSP 1 Score: 300 bits (768), Expect = 2.350e-94
Identity = 174/439 (39.64%), Postives = 262/439 (59.68%), Query Frame = 1
Query:   10 GFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEF---SHFSRDIPFVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEGGETNLLVAVYVDNLVIAGRREKVDEF-KHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADKPSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITFGGKSNGHGLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIG-FGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGL 1311
            G+SQ  G D+ ET APVA+ +++R + S AA+++ +L+ MDV+  +LN+ +++++++Q+P +    +   +    V + +KSL GLKQ+ R WN T+D F++ I    S  D C+Y  R   G   +LV++YVD+L++A    K+ +  K  +S+RF+M D G+LS  LGIEV    P+G++ I Q  +++ VL ++    C+ V TP E   ++S         E      I+YR  VG LMY    TRPDIA AV  A++ +E+P Q  +S  KRIFRYL    DFGI + G  +   + G+ DA+W  DA  R ST+GY F LN G +S  SRKQ  V  SSTEAEY+   EA +E V+++ LL  +G    R    ++EDN+ +I L+K    H  TKHI +R+H  RE +++  +ALKY  T + +ADI TK L
Sbjct:    2 GYSQEYGIDYEETFAPVAKFTSIRVLLSTAAKYNLDLQQMDVNTAFLNSDLDEDIYMQVPDDLDVKATQGQTSKLVLKLKKSLCGLKQAPRLWNETIDGFMLSIRIAKSNADHCIYVMRT--GSRVVLVSLYVDDLILASNCNKMMQATKEALSKRFKMTDLGALSYCLGIEVMRS-PSGSVFIHQSKFLKSVLVKFNMQGCKPVKTPQESGQRLSKYMCPTTDEEKTDMGRIQYRSAVGCLMYLMVTTRPDIAVAVGVASQFLENPGQRHWSAVKRIFRYLKGTEDFGIKYSGSQD---VCGYTDADWVGDANTRHSTSGYCFMLNNGLVSWKSRKQRTVALSSTEAEYMGLSEASQEAVWMKRLLLDLGEVDIRTPIVVWEDNQGSIALAKNPQHHNPTKHIDIRYHFAREKVQDQDIALKYCPTQNMIADIFTKAL 434          
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 302 bits (773), Expect = 6.440e-94
Identity = 174/449 (38.75%), Postives = 262/449 (58.35%), Query Frame = 1
Query:    1 VAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRDIP-FVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLY---FFRDEGGETNLLVAVYVDNLV-IAGRREKVDEFKHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADKPSESKSGTSIE-YRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITF----GGKSNGHGLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGLSR 1317
            VAQG+SQ  G ++ E  +PVAR S++RT+ +LA +H+ E+  MDV   +LN  +E ++++  P  F    ++ P +V + +KSLYGLKQS R WN TLD FL   G   S  D+C+Y      D G  + +++AVYVD+++ I+     ++  K  + + F M D G +  +LG+ ++ DR   T+ ISQ  Y+  VL R+G   C+ + TP+E         +  K +E + G     Y+  +G L Y ST TRPDI+ AV   +  M +P +E ++  KR+ RY+    +FG+ F        NG  L G+ DA WA D + R+ST+GY FK+    +S CS+KQ  VT S+TEAEYVA  +A +E +++R LL  IG      TT++EDN+ AI +SK    H RTKHI VR+H +RE +    + + Y  T   +ADI+TKGL++
Sbjct:   82 VAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGF--VDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLESVLDRFGMANCKPISTPLE--------TTYHKRTEEEEGFDKNLYQQAIGRLTYISTATRPDISAAVSILSSYMSNPSKEHWNGVKRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTK 520          
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 305 bits (782), Expect = 7.360e-94
Identity = 166/441 (37.64%), Postives = 272/441 (61.68%), Query Frame = 1
Query:    1 VAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRDIPFVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEGGETNLLVAVYVDNLVIAGRR-EKVDEFKHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVK-ISAPDSADKPSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITFGGKSNGHGLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGLSR 1317
            VAQGFSQ  G D+ ET +PV R  ++RTV +L+ +   +L  MDV A +LN  +E E++++ P  F    ++     +  KSLYGLKQS R WN+ LD+ L  IG   + +D C+Y   ++G     +VA++VD++++AG+  EK+ + K ++++RF++KD G L  +LG++V   + +  + I Q +Y   ++K+YG + C+ V TPV+   K +SA + ++  ++       E++  VGSL+Y S+ TRPDI +AV+  A+   +P  E ++  KRIFRYL    ++G+ +   +N   + GF DA+WA D  DRKST+GY F++NG A+S  S+KQ  V  S+  AEYVA   A +E +++R+LL  +        T++EDN+SAI +SK    H R+KHI ++++ +R+ + +  L + Y  TG  +AD+ TKG+ +
Sbjct:  214 VAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVI--QEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKE------EHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPK 642          
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA)

HSP 1 Score: 303 bits (775), Expect = 8.810e-94
Identity = 171/439 (38.95%), Postives = 260/439 (59.23%), Query Frame = 1
Query:    1 VAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRDIPFVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEGGETNLLVAVYVDNLVIA-GRREKVDEFKHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADKPSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITFGGKS-NGHGLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGL 1311
            VA+GFSQ EG D+ ET +PVA+++T R++   A + ++ L  +DV   +L+  V +E++++ P     FS +   V R  K+LYGLKQ+ + WNN    FL  IG   S TD CLY     G E  + + +YVD++++A G   +++E K+ + + F ++D G LS  LGI++  +     + ISQG Y++ VL+R+   +C+    P+E KV +S    +   S+        YR ++G LMYA   TRPD++Y ++  +    +P +  +   K + RY+    D+ I +  +S N   LEGFVDA+WA + +DRKS TGY FK+ G  +S  + +Q  +  S+TEAEY+AA  A  E ++LR +L   G       TL+EDN+S I LS+  G H RTKHI +R H IRE + EGI+ LKY+ + +Q ADILTKGL
Sbjct:  131 VARGFSQQEGMDYTETYSPVAKLTTFRSLLVFAVQKNWYLYQLDVKTAFLHGVVNEEIYIEQP---CGFSENNNLVCRLHKALYGLKQASKCWNNRFHQFLTKIGFTRSNTDHCLYTLDFSGSEDLIHLLLYVDDIILASGSINRINELKYQLKEEFEIEDCGILSYYLGIKIEHNIDKAELKISQGQYLKNVLRRFNMLDCKPRSIPIETKVDLSINTLSTTCSQ-------PYRQLIGCLMYAMLATRPDLSYCLNYFSHFQSNPEEVHWMYLKNVLRYIKGTLDYSIIYRKQSGNIPILEGFVDADWA-NHKDRKSVTGYIFKIYGSIVSWSTNRQPTIALSTTEAEYMAASYATCEAIWLRSILKDFGVELFEPITLYEDNQSCIQLSQNPGHHRRTKHIDIRHHFIREKVEEGIVKLKYITSENQQADILTKGL 558          
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM)

HSP 1 Score: 316 bits (809), Expect = 1.060e-93
Identity = 171/440 (38.86%), Postives = 269/440 (61.14%), Query Frame = 1
Query:    1 VAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRDIP-FVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEGGETNLLVAVYVDNLVIAGRREKV-DEFKHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADKPSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITFGGKSNGHGLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIG-FGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGL 1311
            VA+GFSQ  G D+ ET APVA+ +++R V SLAA++  +L  MDV   +LN  +++++++  P    +   D P  V + ++SLYGLKQS R WN T+DDF++ +G +   +D C+Y  RD  G+  + VA+YVD+LV+A   +++ +  KH +S+RF M D G L   LG+E++ D  +G +T+ Q  +++ +L ++G  + + V TP +  +K++            +  ++ YR  VG+LMY    TRPD+A AV   ++   DPC   +   KR+ RYL   P  G+ F  + +  G+ G+ DA+WA D E R+ST+GY F +NGG IS  S+KQ  V  SSTEAEY+A  EA +E V+L+  L  +G      +  ++EDN+ +I L+K    H RTKHI +R+H +RE + +G + L+YV T D +AD++TK +
Sbjct:  724 VAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPD--GYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSVGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEVVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAI 1158          
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 317 bits (811), Expect = 1.260e-93
Identity = 165/438 (37.67%), Postives = 270/438 (61.64%), Query Frame = 1
Query:    1 VAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRDIPFVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEGGETNLLVAVYVDNLVIAGRRE-KVDEFKHNVSQRFRMKDSGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADKPSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFSRCKRIFRYLSTVPDFGITFGGKSNGHGLEGFVDAEWAVDAEDRKSTTGYFFKLNGGAISLCSRKQ*LVTWSSTEAEYVAAGEAGKETVYLRELLGSIGFGCRRSTTLFEDNKSAINLSKAFGAHCRTKHIGVRWHGIREWIREGILALKYVETGDQVADILTKGL 1311
            VAQGFSQ EG D+++T +PVA+++TLRT+ ++A + ++ L+ +DV   +L   + ++++++ P E  +++ D+ F  +  KSLYGLKQ+ + W+   D+++  +G E S +D CLY   +      + + +YVD+++IAG    K+ E K  + + F M+D+G L+  LG+++  D+  G + I+Q  Y+ +VLK++  D C  + TP+E K+ I          ++K   +  YR +VGSLMYA   +RPD++YA++   R    P +  ++  KR+ RY+    + G+ F  +SN   L GFVDA+WA    DRKSTTGY FK+    +S  +++Q  V  SSTEAEY+A   A  E +++R+LL  +         LFEDN+ AI+LS +   H R+KHI  + H +RE ++EG++ LKY+ T +Q+AD+LTKGL
Sbjct:  839 VAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQP-EGLNYNSDMIF--KLNKSLYGLKQASKCWHERFDNYIAKLGLEQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIEE--------DNKQECNQPYRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAVSNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREKVKEGLIELKYIPTSNQLADLLTKGL 1265          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47271.11750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9KES8_PARCT7.230e-9740.32Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A4Y9ZJA2_9AGAM5.250e-9542.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A5S6QJX2_TRIMR1.220e-9439.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7JEY7_PARCT1.300e-9439.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0X2D0_9STRA2.350e-9439.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9JFU5_PARCT6.440e-9438.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT7.360e-9437.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2S2NPY8_SCHGA8.810e-9438.95Copia protein (Fragment) n=1 Tax=Schizaphis gramin... [more]
H3H4L3_PHYRM1.060e-9338.86Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
J9KJ72_ACYPI1.260e-9337.67Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47271contigH-paniculata_contig47271:89..1465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.9
Seed ortholog evalue1.7e-54
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1317
Cds size948
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47271.11750.1prot_H-paniculata_contig47271.11750.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47271 392..1399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.6618044-UTR-H-paniculata_contig47271:88..3911622930405.6618044-UTR-H-paniculata_contig47271:88..391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47271 89..391 -
1691481277.1090803-UTR-H-paniculata_contig47271:88..3911691481277.1090803-UTR-H-paniculata_contig47271:88..391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47271 89..391 -
1622930405.700838-UTR-H-paniculata_contig47271:1399..14651622930405.700838-UTR-H-paniculata_contig47271:1399..1465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47271 1400..1465 -
1691481277.1414027-UTR-H-paniculata_contig47271:1399..14651691481277.1414027-UTR-H-paniculata_contig47271:1399..1465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47271 1400..1465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.6773334-CDS-H-paniculata_contig47271:391..7251622930405.6773334-CDS-H-paniculata_contig47271:391..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47271 392..725 -
1691481277.1201978-CDS-H-paniculata_contig47271:391..7251691481277.1201978-CDS-H-paniculata_contig47271:391..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47271 392..725 -
1622930405.6888208-CDS-H-paniculata_contig47271:785..13991622930405.6888208-CDS-H-paniculata_contig47271:785..1399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47271 786..1399 -
1691481277.1322246-CDS-H-paniculata_contig47271:785..13991691481277.1322246-CDS-H-paniculata_contig47271:785..1399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47271 786..1399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47271.11750.1

>prot_H-paniculata_contig47271.11750.1 ID=prot_H-paniculata_contig47271.11750.1|Name=mRNA_H-paniculata_contig47271.11750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
MSTLRTVFSLAAEHDFELEGMDVDATYLNAPVEKELFVQLPPEFSHFSRD
IPFVRRPRKSLYGLKQSGRNWNNTLDDFLVGIGRECSFTDSCLYFFRDEG
GETNLLVAVYVDNLVIAGRREKVDEFKHNVSQRFRMKDSGSLSRVLGIEV
RCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPDSADK
PSESKSGTSIEYRGMVGSLMYASTRTRPDIAYAVHQAARCMEDPCQEDFS
RCKRIFRYLSTVPDFGITFGGKSNGHGLEGFVDAEWAVDAEDRKSTTGYF
FKLNGGAISLCSRKQ*
back to top

mRNA from alignment at H-paniculata_contig47271:89..1465-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47271.11750.1 ID=mRNA_H-paniculata_contig47271.11750.1|Name=mRNA_H-paniculata_contig47271.11750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1377bp|location=Sequence derived from alignment at H-paniculata_contig47271:89..1465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCTCAAGGTTTTTCACAGGTGGAGGGTGAAGATTTCTTTGAAACCAG TGCTCCCGTAGCTCGCATGTCGACGTTACGTACTGTTTTTAGCCTGGCCG CCGAACATGATTTCGAATTAGAAGGCATGGACGTAGATGCGACGTATTTG AACGCCCCGGTAGAAAAAGAGCTGTTTGTTCAGCTACCCCCCGAGTTTTC TCATTTCTCCCGAGACATACCATTTGTGCGCCGCCCGCGTAAAAGCCTGT ACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGACGATTTT CTTGTTGGGATAGGACGCGAATGTTCCTTTACCGACTCATGCCTGTACTT TTTCCGCGACGAAGGGGGAGAGACAAACCTTCTGGTGGCCGTGTATGTTG ACAACCTGGTCATTGCTGGTCGTCGTGAGAAAGTAGACGAGTTCAAGCAT AACGTAAGTCAGCGTTTTAGGATGAAAGACTCAGGCTCTCTCTCGCGCGT GTTGGGAATAGAAGTACGATGTGACCGCCCTAACGGTACCATAACCATTT CGCAGGGTAGCTATATCCGCGAGGTACTAAAAAGATACGGTTTTGACGAG TGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACC CGACTCGGCCGACAAGCCCTCCGAATCGAAGTCACTTGGAGCTGTACTGT CGGGCATAGGCGTAGGAGTACAAGAAAGCAGCAGAGGGAGAAGTGGCACT TCGATTGAATACAGAGGCATGGTAGGATCACTCATGTACGCCTCGACAAG AACTAGACCTGATATAGCGTACGCGGTACACCAAGCAGCACGTTGTATGG AGGACCCGTGTCAAGAAGACTTCAGTAGATGCAAGCGCATTTTTCGTTAT CTCAGTACTGTGCCTGACTTCGGCATTACGTTCGGCGGTAAGAGTAATGG TCACGGTTTGGAAGGATTCGTTGATGCCGAGTGGGCTGTAGATGCCGAGG ACCGAAAGTCCACGACAGGATACTTTTTCAAGCTGAACGGTGGTGCAATA AGTTTGTGCTCTAGGAAGCAATAGTTAGTGACGTGGTCCAGTACAGAGGC AGAGTACGTTGCGGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGG AGTTACTAGGATCAATAGGTTTCGGGTGCAGGAGGAGCACGACATTGTTT GAGGACAATAAATCAGCTATTAATCTCAGTAAGGCATTTGGCGCACACTG CAGGACAAAGCACATTGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTC GGGAAGGAATATTGGCATTGAAATACGTGGAGACCGGCGATCAAGTTGCT GACATTTTAACGAAAGGACTAAGCAGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig47271:89..1465-

>mRNA_H-paniculata_contig47271.11750.1 ID=mRNA_H-paniculata_contig47271.11750.1|Name=mRNA_H-paniculata_contig47271.11750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig47271:89..1465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTCGA
ATTAGAAGGCATGGACGTAGATGCGACGTATTTGAACGCCCCGGTAGAAA
AAGAGCTGTTTGTTCAGCTACCCCCCGAGTTTTCTCATTTCTCCCGAGAC
ATACCATTTGTGCGCCGCCCGCGTAAAAGCCTGTACGGCCTCAAGCAGAG
CGGCCGAAACTGGAATAACACTCTTGACGATTTTCTTGTTGGGATAGGAC
GCGAATGTTCCTTTACCGACTCATGCCTGTACTTTTTCCGCGACGAAGGG
GGAGAGACAAACCTTCTGGTGGCCGTGTATGTTGACAACCTGGTCATTGC
TGGTCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACGTAAGTCAGCGTT
TTAGGATGAAAGACTCAGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTA
CGATGTGACCGCCCTAACGGTACCATAACCATTTCGCAGGGTAGCTATAT
CCGCGAGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGAGTACCCA
CCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCGACTCGGCCGACAAG
CCCTCCGAATCGAAATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCC
GAACATGATTTCGAATTAGAAGGCATGGACGTAGATGCGACGTATTTGAA
CGCCCCGGTAGAAAAAGAGCTGTTTGTTCAGCTACCCCCCGAGTTTTCTC
ATTTCTCCCGAGACATACCATTTGTGCGCCGCCCGCGTAAAAGCCTGTAC
GGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGACGATTTTCT
TGTTGGGATAGGACGCGAATGTTCCTTTACCGACTCATGCCTGTACTTTT
TCCGCGACGAAGGGGGAGAGACAAACCTTCTGGTGGCCGTGTATGTTGAC
AACCTGGTCATTGCTGGTCGTCGTGAGAAAGTAGACGAGTTCAAGCATAA
CGTAAGTCAGCGTTTTAGGATGAAAGACTCAGGCTCTCTCTCGCGCGTGT
TGGGAATAGAAGTACGATGTGACCGCCCTAACGGTACCATAACCATTTCG
CAGGGTAGCTATATCCGCGAGGTACTAAAAAGATACGGTTTTGACGAGTG
TCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCG
ACTCGGCCGACAAGCCCTCCGAATCGAAAAGTGGCACTTCGATTGAATAC
AGAGGCATGGTAGGATCACTCATGTACGCCTCGACAAGAACTAGACCTGA
TATAGCGTACGCGGTACACCAAGCAGCACGTTGTATGGAGGACCCGTGTC
AAGAAGACTTCAGTAGATGCAAGCGCATTTTTCGTTATCTCAGTACTGTG
CCTGACTTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTTTGGA
AGGATTCGTTGATGCCGAGTGGGCTGTAGATGCCGAGGACCGAAAGTCCA
CGACAGGATACTTTTTCAAGCTGAACGGTGGTGCAATAAGTTTGTGCTCT
AGGAAGCAATAGAAGTGGCACTTCGATTGAATACAGAGGCATGGTAGGAT
CACTCATGTACGCCTCGACAAGAACTAGACCTGATATAGCGTACGCGGTA
CACCAAGCAGCACGTTGTATGGAGGACCCGTGTCAAGAAGACTTCAGTAG
ATGCAAGCGCATTTTTCGTTATCTCAGTACTGTGCCTGACTTCGGCATTA
CGTTCGGCGGTAAGAGTAATGGTCACGGTTTGGAAGGATTCGTTGATGCC
GAGTGGGCTGTAGATGCCGAGGACCGAAAGTCCACGACAGGATACTTTTT
CAAGCTGAACGGTGGTGCAATAAGTTTGTGCTCTAGGAAGCAATAG
back to top