mRNA_H-paniculata_contig47268.11749.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47268.11749.1
Unique NamemRNA_H-paniculata_contig47268.11749.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: D7FU41_ECTSI (Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU41_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 6.430e-38
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNP+PE  AEDLVFAGDNFIR
Sbjct:  299 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIR 369
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BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: A0A836CLD5_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.640e-33
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            QGRVARQGGLGGAQM TTVRNLRIREDRAKYLYNLDP+SAYYDPKTRAMR+NP P AN E+L +AGDNF+R
Sbjct:  262 QGRVARQGGLGGAQMATTVRNLRIREDRAKYLYNLDPDSAYYDPKTRAMRENPNPSANPEELAYAGDNFMR 332
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BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: A0A6G0RVC6_9STRA (Pre-mRNA-splicing factor SLU7 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RVC6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.200e-32
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    7 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP PE N ED  + GDN  R
Sbjct:    5 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYVGDNIAR 73
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BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: A0A7S2MS38_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS38_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.240e-32
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            Q R+ARQGG+GGAQMKTTVRNLRIRED AKYL NLDPNSAYYDPKTR+MRDNPLP  N E++ +AGDNF R
Sbjct:  164 QKRIARQGGIGGAQMKTTVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPLPNENPEEVQYAGDNFSR 234
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BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: A0A6A3U154_9STRA (Pre-mRNA-splicing factor SLU7 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U154_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.430e-31
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    7 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            RVARQGG+GGAQMKTTVRNLRIR+D AKYL NL+PNSAYYDPKTR+MRDNP PE N ED  + GDN  R
Sbjct:    5 RVARQGGVGGAQMKTTVRNLRIRDDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYVGDNIAR 73
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BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: A0A7S1UIW3_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIW3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.140e-31
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            QGRVARQGG+GGAQM TTVRNLR+RED AKYL NLDPNSAYYDPK+RAMRDNPLP  +   LV+AGDNF+R
Sbjct:   72 QGRVARQGGVGGAQMFTTVRNLRVREDTAKYLLNLDPNSAYYDPKSRAMRDNPLPHMDPNKLVYAGDNFVR 142
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BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: W7TVH6_9STRA (Pre-mRNA-splicing factor SLU7 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVH6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.250e-31
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            QGRVARQGG+GGAQMK +VRNLRIRED AKYL NLDPNSAYYDPKTRAMRDNPLP  + E+L +AGDN++R
Sbjct:  242 QGRVARQGGVGGAQMKVSVRNLRIREDTAKYLRNLDPNSAYYDPKTRAMRDNPLPGTHPEELAYAGDNYVR 312
[Close]
BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: A0A7S2V1R9_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1R9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.320e-31
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            QGRVARQGGLGGAQMKTTVRNLRIRED AKYL NLDPNSA+YDPKTR+MR NP P  +AE+ ++AGDN++R
Sbjct:  255 QGRVARQGGLGGAQMKTTVRNLRIREDTAKYLRNLDPNSAFYDPKTRSMRANPTPHLDAENTLYAGDNWVR 325
[Close]
BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: A0A7S2SN22_9STRA (Pre-mRNA-splicing factor SLU7 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN22_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.990e-31
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            Q R+ARQGG+GGAQMKTTVRNLRIRED AKYL NLDPNSAYYDPKTR+MRDNPLP  N ED+ FAGDN+ R
Sbjct:  312 QKRIARQGGVGGAQMKTTVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPLPAENPEDIPFAGDNYQR 382
[Close]
BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Match: A0A7R9U7Z6_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Z6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.630e-30
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPLPEANAEDLVFAGDNFIR 213
            QGRVARQGGLGGAQM TTVRNLR+RED+AKYL NLDPNSAYYDPK+R+MR+NPLP  +    V+AGDNFIR
Sbjct:  260 QGRVARQGGLGGAQMATTVRNLRLREDKAKYLLNLDPNSAYYDPKSRSMRENPLPHLDPAQAVYAGDNFIR 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47268.11749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU41_ECTSI6.430e-3895.77Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus T... [more]
A0A836CLD5_9STRA1.640e-3385.92Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema mi... [more]
A0A6G0RVC6_9STRA1.200e-3279.71Pre-mRNA-splicing factor SLU7 n=2 Tax=Phytophthora... [more]
A0A7S2MS38_9STRA4.240e-3280.28Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=D... [more]
A0A6A3U154_9STRA1.430e-3178.26Pre-mRNA-splicing factor SLU7 n=3 Tax=Phytophthora... [more]
A0A7S1UIW3_9STRA2.140e-3180.28Pre-mRNA-splicing factor SLU7 n=1 Tax=Phaeomonas p... [more]
W7TVH6_9STRA3.250e-3180.28Pre-mRNA-splicing factor SLU7 n=2 Tax=Monodopsidac... [more]
A0A7S2V1R9_9STRA4.320e-3178.87Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=F... [more]
A0A7S2SN22_9STRA5.990e-3181.69Pre-mRNA-splicing factor SLU7 n=2 Tax=Rhizochromul... [more]
A0A7R9U7Z6_9STRA1.630e-3078.87Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47268contigH-paniculata_contig47268:546..761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue7.6e-32
Seed eggNOG ortholog2880.D7FU41
Preferred nameSLU7
KEGG koko:K12819,ko:K17081,ko:K20040
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065003,GO:0065007,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2560@1,KOG2560@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03041,ko04131,ko04147
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.6198936-CDS-H-paniculata_contig47268:545..7611622930405.6198936-CDS-H-paniculata_contig47268:545..761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47268 546..761 +
1691481277.0961604-CDS-H-paniculata_contig47268:545..7611691481277.0961604-CDS-H-paniculata_contig47268:545..761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47268 546..761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47268.11749.1prot_H-paniculata_contig47268.11749.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47268 546..761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47268.11749.1

>prot_H-paniculata_contig47268.11749.1 ID=prot_H-paniculata_contig47268.11749.1|Name=mRNA_H-paniculata_contig47268.11749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMR
DNPLPEANAEDLVFAGDNFIR*
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mRNA from alignment at H-paniculata_contig47268:546..761+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47268.11749.1 ID=mRNA_H-paniculata_contig47268.11749.1|Name=mRNA_H-paniculata_contig47268.11749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig47268:546..761+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTCGAGTAGCACGACAAGGAGGTCTCGGCGGTGCGCAAATGAAGAC
CACCGTGCGAAACTTGCGTATCCGTGAGGACCGGGCCAAGTACCTCTACA
ACCTGGACCCCAACTCGGCGTACTACGACCCGAAGACTCGGGCGATGCGC
GACAATCCTTTGCCGGAGGCAAATGCGGAGGACCTTGTGTTTGCCGGTGA
TAACTTCATTCGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig47268:546..761+

>mRNA_H-paniculata_contig47268.11749.1 ID=mRNA_H-paniculata_contig47268.11749.1|Name=mRNA_H-paniculata_contig47268.11749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig47268:546..761+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTCGAGTAGCACGACAAGGAGGTCTCGGCGGTGCGCAAATGAAGAC
CACCGTGCGAAACTTGCGTATCCGTGAGGACCGGGCCAAGTACCTCTACA
ACCTGGACCCCAACTCGGCGTACTACGACCCGAAGACTCGGGCGATGCGC
GACAATCCTTTGCCGGAGGCAAATGCGGAGGACCTTGTGTTTGCCGGTGA
TAACTTCATTCGGTGACAGGGTCGAGTAGCACGACAAGGAGGTCTCGGCG
GTGCGCAAATGAAGACCACCGTGCGAAACTTGCGTATCCGTGAGGACCGG
GCCAAGTACCTCTACAACCTGGACCCCAACTCGGCGTACTACGACCCGAA
GACTCGGGCGATGCGCGACAATCCTTTGCCGGAGGCAAATGCGGAGGACC
TTGTGTTTGCCGGTGATAACTTCATTCGGTGA
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