mRNA_H-paniculata_contig4726.11748.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4726.11748.1
Unique NamemRNA_H-paniculata_contig4726.11748.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4726.11748.1 vs. uniprot
Match: D7FP56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP56_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.170e-27
Identity = 85/180 (47.22%), Postives = 101/180 (56.11%), Query Frame = 1 
Query: 2254 YKGDWNHGVREGHGACSFVFGVANCSTKHARSGISNGYDCPISSHVYEGVWVNGRPQGRGILTLRSTLDTTMTADLLDVRTGQRQGSKAAGRERGWGXXXXXXXXXSVIEGLWDDERGLIRGREKVPGSQGGVYEGHYQRGRRDGHGRLELPDXXXXXXXXXXXXXXXVGVFRCGLTRQV 2793
            Y+GD+  GVR+GHG CSF           A  G       P   + Y+G WV GRP GRG+L+LR        A         R  S  AG   G G           IEGLW +E GL RGREK+PG +GGVYEG Y+ G+R+GHGRL+LPD   XXXXXXXXXX  +G FRCG+TR V
Sbjct:  312 YRGDFKRGVRDGHGVCSFFTAGCGGGCSVATGGTPGATSIPTIPNSYDGEWVGGRPLGRGVLSLR----VVAAAPAXXXXXSNRYSSSVAGS--GSGLAGRGGGSGGSIEGLWTEE-GLARGREKLPG-KGGVYEGQYRLGKREGHGRLDLPDGSEXXXXXXXXXXNGIGTFRCGVTRHV 483
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4726.11748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP56_ECTSI1.170e-2747.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4726contigH-paniculata_contig4726:5496..14470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D7FP56
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons10
Model size2979
Cds size2979
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4726.11748.1prot_H-paniculata_contig4726.11748.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4726 5496..14470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.4402614-CDS-H-paniculata_contig4726:5495..56411622930405.4402614-CDS-H-paniculata_contig4726:5495..5641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 5496..5641 -
1691481276.9873462-CDS-H-paniculata_contig4726:5495..56411691481276.9873462-CDS-H-paniculata_contig4726:5495..5641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 5496..5641 -
1622930405.4617012-CDS-H-paniculata_contig4726:6334..64391622930405.4617012-CDS-H-paniculata_contig4726:6334..6439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 6335..6439 -
1691481276.9985847-CDS-H-paniculata_contig4726:6334..64391691481276.9985847-CDS-H-paniculata_contig4726:6334..6439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 6335..6439 -
1622930405.477857-CDS-H-paniculata_contig4726:8695..90551622930405.477857-CDS-H-paniculata_contig4726:8695..9055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 8696..9055 -
1691481277.0085125-CDS-H-paniculata_contig4726:8695..90551691481277.0085125-CDS-H-paniculata_contig4726:8695..9055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 8696..9055 -
1622930405.4905376-CDS-H-paniculata_contig4726:9175..96651622930405.4905376-CDS-H-paniculata_contig4726:9175..9665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 9176..9665 -
1691481277.0178132-CDS-H-paniculata_contig4726:9175..96651691481277.0178132-CDS-H-paniculata_contig4726:9175..9665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 9176..9665 -
1622930405.507348-CDS-H-paniculata_contig4726:9972..103051622930405.507348-CDS-H-paniculata_contig4726:9972..10305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 9973..10305 -
1691481277.0295548-CDS-H-paniculata_contig4726:9972..103051691481277.0295548-CDS-H-paniculata_contig4726:9972..10305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 9973..10305 -
1622930405.519566-CDS-H-paniculata_contig4726:11060..114271622930405.519566-CDS-H-paniculata_contig4726:11060..11427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 11061..11427 -
1691481277.0385172-CDS-H-paniculata_contig4726:11060..114271691481277.0385172-CDS-H-paniculata_contig4726:11060..11427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 11061..11427 -
1622930405.5338943-CDS-H-paniculata_contig4726:12011..122691622930405.5338943-CDS-H-paniculata_contig4726:12011..12269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 12012..12269 -
1691481277.0478275-CDS-H-paniculata_contig4726:12011..122691691481277.0478275-CDS-H-paniculata_contig4726:12011..12269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 12012..12269 -
1622930405.547682-CDS-H-paniculata_contig4726:12794..131681622930405.547682-CDS-H-paniculata_contig4726:12794..13168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 12795..13168 -
1691481277.0594342-CDS-H-paniculata_contig4726:12794..131681691481277.0594342-CDS-H-paniculata_contig4726:12794..13168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 12795..13168 -
1622930405.5648293-CDS-H-paniculata_contig4726:13288..137391622930405.5648293-CDS-H-paniculata_contig4726:13288..13739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 13289..13739 -
1691481277.0703576-CDS-H-paniculata_contig4726:13288..137391691481277.0703576-CDS-H-paniculata_contig4726:13288..13739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 13289..13739 -
1622930405.5769515-CDS-H-paniculata_contig4726:14375..144701622930405.5769515-CDS-H-paniculata_contig4726:14375..14470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 14376..14470 -
1691481277.0829277-CDS-H-paniculata_contig4726:14375..144701691481277.0829277-CDS-H-paniculata_contig4726:14375..14470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4726 14376..14470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4726.11748.1

>prot_H-paniculata_contig4726.11748.1 ID=prot_H-paniculata_contig4726.11748.1|Name=mRNA_H-paniculata_contig4726.11748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=993bp
MSVVWKKVENCAPKVAGYESVAGAVPCVVKTRVYLVGGASATRKQDPDIS
IGVYNCNSYGINSTPASSTNSGHSNNKEHRASDHAGSNLPASTDAITATR
FSGVFGAVQAGDIPASRIGHAAVTSPRSTIILFGGEVCSTARGRDSYCSK
LCDLFECTLKPHQSAPHEETPSSTYDEPPDTASAANKGTKAGVAGGGAVP
PAIILPDNPPPMAFFASCAAIVKGEWGMLVHGGTAGLAAEQGDGGGEGGA
EGSRATEAGAGRLSRDLWVLRLDFEESDRADDQQQHCHGRHRAPNFSWKR
LVPEGEGPPPTAHHSATPLSNGETVVFVGGKDRCGSVIFLLDTVDLRWSS
VDVANSGGIRGRCLLHGAVSISGLEAHRYITIHHKAPFDRAVRQMYEEAR
GIDEVCSSSPIEALDSVGDSFVCRETTHLWRPILRASDRIATLSTGARNE
VEGNGGTEGAGEIGKRSTKNAAEDGKPGGKGENDGGDGDDNCGGGKSVYE
SVLIFGGVGDVGIRGEATVLWADGTVSPLPLAARNPSTSSTSSLVSPTLS
LSSPPHLVEPGPRFNHAMVSINEGQQTIVFGGCRADGTRAQDAFMLDFSD
DLTRVGSGGEEVGGIDDVMEGNGTSEQGSTTVTLDNGDIYTGHLDEQGHR
HGRGRCEFTSTPPAAAAAATRNNDTTAPLGGGRGGRVYDGEWKNDLPHGY
GECVYPTRWSGKAVDSSAEERVNIFSGSSSDDGGDTTAVVRDGQPPVVLL
NYKGDWNHGVREGHGACSFVFGVANCSTKHARSGISNGYDCPISSHVYEG
VWVNGRPQGRGILTLRSTLDTTMTADLLDVRTGQRQGSKAAGRERGWGGG
GGGGGGGSVIEGLWDDERGLIRGREKVPGSQGGVYEGHYQRGRRDGHGRL
ELPDGSEYEGAWRNGRQNGVGVFRCGLTRQVYTGKWVGGVRCGRGVCEYA
DGSRYEGLWLDNLRHGAGVLTSPGGDPQVGQWNLGELQAPVL*
back to top

mRNA from alignment at H-paniculata_contig4726:5496..14470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4726.11748.1 ID=mRNA_H-paniculata_contig4726.11748.1|Name=mRNA_H-paniculata_contig4726.11748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8975bp|location=Sequence derived from alignment at H-paniculata_contig4726:5496..14470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGTGGTGTGGAAGAAAGTTGAGAATTGTGCGCCAAAAGTCGCAGG
ATACGAAAGTGTCGCGGGTGCCGTTCCTTGCGTCGTAAAAACTAGGTCAG
TACATGAATCAAATAATGGATGACGGTGCTGCGATCATCCATTGCATCAT
CAGATATCAATTAGATGAAGCTGGGATCGACAGCAGCACAACAAATTTAC
CTGGTAGCTGGGCGTATGATCAAGCGCCTTTTGGGGTTTTATCGTCGTGC
TGTCTATGCTATGGGCTGCTTGGAATTCTTTCTGTATACAACCACATTTT
ATCAACTCAATATCCACATTCATTCCTTATCATGACTGAGTGAATGTTGT
ACTACGTACAGATGGAAATTTTCTGCCGGCACTCGATGCTGAGCATGAGT
TCCGATTGGATACGAATTTACAGCAGTAGTGTCTTTCACGTGGTGACTAT
CAACAGAGGAATGCAATACCACGTTGCATCAGCTTGGTCCAGCGTATATA
TGATTATCGAGTAAACCTAGAAAGTACAAGCACCACGTTTACTCGTTTTC
CATGTGTTATTACTTGTTTGGTTCACTATTAGTAAATTGGCGACGAATAA
CTATAGCGATGCTGATGATCAATTCGCGCTGAAAACATATTAATAGCTGT
CTTTATCTTCTCTCATAATTTTGACTGAAAAACATTAAATAAAGGAGCTC
ATTGCCCTGGTCTCCCCACTCCGTGACGAAGGGTGTACTTGGTGGGTGGA
GCTTCAGCAACGCGAAAGCAGGATCCCGACATTTCCATCGGCGTGTACAA
CTGCAACAGCTATGGCATCAACAGTACCCCAGCATCATCGACAAACTCTG
GACACTCAAACAACAAAGAACATCGAGCTAGTGACCACGCCGGTTCAAAT
CTTCCGGCATCAACAGATGCAATAACTGCTACGAGATTCAGTGGTGTTTT
CGGCGCGGTCCAAGCGGGAGACATACCGGCATCGAGAATAGGACACGCAG
CAGTGACCTCCCCTAGATCGACGATAATCCTCTTTGGCGGAGAAGTATGC
TCAACGGCCCGTGGTCGCGACTCGTACTGCTCAAAGCTCTGCGACTTGTT
TGAGTGTACCCTCAAACCCCACCAGAGTGCACCTCACGAGGAAACACCGT
CGTCCACATACGATGAGCCACCGGATACAGCAGTTTTGGTGTGGCGAACC
CTTTCTAACGCTTCCGGACGCGACAAGAGTGCCTGCCAGTCGGCCGCGAA
TCTAAACGGAACCGTATCAAGCGATGTTGAACCCAAAGCGAAAAAGCACC
AGTCTGCCGCAAACAAAGGCACAAAAGCTGGGGTGGCGGGAGGAGGAGCA
GTGCCACCCGCGATCATTTTACCGGACAACCCCCCACCCATGGCGTTCTT
TGCTTCGTGTGCTGCTATTGTGAAAGGAGAGTGGGGCATGCTTGTACACG
GCGGGACAGCGGGGCTGGCAGCGGAACAGGGGGACGGTGGGGGTGAAGGG
GGGGCGGAGGGGAGTAGGGCGACGGAGGCGGGGGCTGGCCGGTTGTCACG
GGATCTATGGGTGCTCCGACTAGACTTTGAAGAAAGTGACCGAGCTGATG
ATCAACAACAGCATTGCCATGGCAGGCATCGTGCGCCCAATTTTTCTTGG
AAGCGCCTGGTCCCGGAGGGCGAGGGGTGAGTGAGTAAGAGAGTGAGAGA
ATGAGTGAGTGAGGAAAGCGAGCTGCTAAGCTTAGGATGGTAGCGACCGT
TGCCAATACTCAAACTTTATGATAATGTCACTCTCCTCACAGAAATAAAC
GCAATCAGCACTTGGAAAAGTCATACCTGGCGGTCAGTACATCGTAATTC
GGAGAGACATCTAGCACTCGACGAAAAACATTGCTTAACAAATAGTGATC
ACAGGTTACCGGACGCAAATCTCACTCCCAAGCACCCCTGATACATGTTT
AATCTGCCTAATATGAGCGTAGGGAACAGTCATTTCACGGGGTTCAAATT
GTTGACACTGCCGGTGATTACGGCAGTCGATGGGGAACTCATGACCAAAT
CCACTATCTCTGGCCGTGTTGAGACTGCCGGTGAAGCGATTCCGCACTAA
TGCCACACTGAAATAGAATGTAGCGGAATTGAAGAACTTGAATCAATGAC
ATGGACGAGGCCATGTTTTTCTCACACATTGTGTTGCAATCGTACACTCA
GACCCCCACCGACGGCGCATCACTCCGCTACGCCGTTGAGCAACGGTGAG
ACCGTCGTGTTCGTGGGCGGGAAGGATCGCTGCGGATCTGTGATATTTCT
GCTGGACACGGTTGACTTGAGGTGGTCTTCAGTGGACGTTGCAAACAGTG
GTGGTATACGTGGACGGTGCCTGCTGCATGGGGCTGTTTCGATCAGCGGT
CTCGAAGCCCACAGGTACATAACAATACACCACAAGGCGCCTTTTGATCG
GGCTGTGCGGTGAATATCAAATGCTTCTAGGCACTCAAGGACATCGGTCG
TACATTATGCAAGGCACGACCACGTAATGGCCTCAGACTAGGATCGGATA
TCGCAATCTCATCTCTCAGCAGAAGTGCCGTGTGCATGTGTAATAACGGC
CATAAACGGATGACGAGTGGACACGATGTAATCAGACAATTCCAACATCC
ACTGGCCAGAATGGACACACGCATTTCTTACGACTACGTGTTACACACAC
ACATTGCCCTACCCCTAACCCCTCCCCGCCGCCCGCCCGTCCGGCTGCCC
CCCTTCGTTCCGTTATTCAGTTGACAAGCTCTTGCGGGTATCATTTATAT
ACATCCGAACTCACATCAAGCGTTAATTGGTTATCATGCGCAAAGTGTGT
GGACTATGAAGGCAAGTATATATAGCCCTGCTCTGATCCCCTGTGATAGA
TTGCTTTGGTTTGTACAGAGTCCAAGTATTCCAATTATTTCGGCTCCTAC
CCTGAACAACCCCTCCCCCCCCCCCGGTCAATCTTCCACGCTTGCACCGT
CGTGCAATCGCCCTCACCGGGCGGATAGAACCCCGGAACCAAGCCAGATG
TACGAAGAAGCAAGAGGCATAGATGAGGTGTGCTCTAGCAGCCCAATCGA
AGCCTTGGACTCGGTGGGAGATTCGTTTGTATGTAGAGAAACGACTCATC
TCTGGCGACCCATACTAAGGGCTTCCGATAGGATAGCAACGCTATCAACT
GGCGCACGAAATGAAGTAGAGGGAAACGGAGGAACAGAAGGAGCAGGAGA
AATAGGAAAGAGAAGTACAAAGAACGCCGCTGAGGACGGGAAACCGGGTG
GAAAAGGTGAAAACGATGGTGGTGACGGCGACGATAACTGCGGTGGCGGA
AAATCTGTTTACGAGTCTGTTCTTATTTTCGGGGGTGTCGGTGACGTGGG
AATTCGAGGGGTGAGCGAGTCCTGCGGCAGGCAAGAAAAAAGAGAAGGAC
AATGGGAAACTAGCCCTACAAGCTTTGGTAGTTTACTAAATGCCCGTAGC
AGCATCCAGATAATGATGCGATAACGATAAAGTAAAGATATCAGAACTCT
TGCAAGTTATCTCGCGAAGATATTGTCTACCCTCAAGCTTTGCAGGTCAT
GAGATTCACCTGTTGTGTACTCCGAGTATCAGAGTGATATCTCATTGGTT
TTATCACAATTCATTAATTCCGTTCGCCGTATGTCTTCGGCCTGTGTTCT
TGTATGTTGCCAAGTGTTGATTCGGGCACAGCGCTTCGTTTTTTGCACTG
CAGTAGAGAGAAAAATGACGGCATTCCGAGTGACTACAGTAGCTCCCAAA
AATCGGTGCGTGAGACAGAAAGATCAGAAGCCTAAGATGCGGCAGAAAGC
CGTCTATAGGAGCGTCAGTTGCACACGCAATCCTTTCTTGAACCGGCAGG
AAAATACCGACGTCGATGACTTATTATTTTCACAGTACCAAGTCGGTTGT
GTCGTCTATGGTTCTTGATCGCCGCGCTAATGCTGAAAACATGTAACCAT
GACCTTTTTTCACTTCACTTTGCTACTTTGATTTTCTAAGATGGTAAGAT
AAATGGCCCTTCGAAGGCAAACTCCCTCGCCATAGCTTGTGGGGAAACAT
ACCTTCATGCACTTGGTCTGAGCGCACCCCGCAAAATACGTCAAAAACAT
TGAAAAAATACGCAGGAAGCCACAGTCCTCTGGGCCGACGGCACCGTATC
TCCTCTCCCCCTTGCTGCTCGCAACCCATCAACATCATCAACGTCATCAT
TGGTATCACCGACATTGTCTTTATCATCGCCACCGCATTTAGTAGAGCCG
GGTCCTCGTTTTAACCACGCGATGGTGTCGATAAATGAGGGTCAACAGAC
GATCGTATTCGGAGGGTGCCGCGCAGACGGCACCAGAGCGCAGGACGCTT
TCATGCTCGACTTTTCAGACGACTTAACGAGGGTGGGCAGTGGTGGGGAG
GAAGTCGGGGGCATAGACGATGTCATGGAAGGAAACGGGACCTCTGAGGT
AAAGTCTGAAAGTGCGCCATATGAATGCATTGTATATATAAGTTAGCCCT
GTACACGAAGGGCGGGGTTAGTTCAATTGCAATAATTGGCGAAGCCTAGT
TTCGTCCCGTGTTTGCTGACTGGCAGTCCCGCATTCTTCGAACACTAAGC
AAAGAATATTGACCCCCCAACATTTTGATGTCGTTTCGAGAGACCACCCA
CCTCCCACCCCCATCGTGCCCCCCTTCTACCAACCACCTCGATAACACGT
GTGAATCACACTCAACAAACACACATAACACAACGCAATACAACGCAACA
TGTAGCAGGGCAGCACGACCGTGACGTTGGACAATGGAGACATTTACACC
GGCCATCTCGACGAACAAGGCCACCGACATGGCCGAGGACGCTGTGAATT
CACATCCACGCCGCCTGCCGCCGCCGCCGCCGCCACTCGAAACAACGACA
CCACAGCCCCACTCGGAGGAGGAAGAGGGGGTAGGGTCTACGACGGGGAG
TGGAAAAATGACCTGCCACATGGATACGGCGAGTGTGTTTACCCTACCCG
GTGGTCGGGAAAGGCGGTAGACTCTAGTGCGGAAGAAAGAGTTAATATCT
TCAGCGGTAGCAGCAGTGACGATGGTGGCGACACAACGGCTGTTGTAAGA
GACGGTCAACCCCCGGTGGTACTGTTGAACTACAAAGGAGATTGGAATCA
CGGCGTGCGTGAAGGGCACGGCGCCTGCTCTTTCGTCTTCGGCGTTGCGA
ACTGTTCAACGAAACATGCGCGCAGCGGCATCTCCAATGGCTACGGTGAC
GATGCCATAACCGCTGCAGCTACCGGAGGGGGGGAAGGTACCCCTCGCAC
CTTCTCGGCATGCTCAAGCTCGGAAGGCAGTAGCAGCAGGCAAACTGTCG
ACTTCCCTGCTATAGACTGCCCTATTTCCTCCCATGTGTACGAGGGTGTA
TGGGTAAACGGAAGGCCGCAAGGAAGAGGGATCCTTACCCTGCGCTCGAC
GCTGGACACAACAATGACAGCCGATCTGTTGGATGTGAGGACAGGCCAAC
GCCAAGGCAGTAAGGCCGCGGGCAGGGAAAGAGGGTGGGGCGGCGGCGGC
GGTGGTGGTGGTGGCGGATCGGTTATTGAGGGATTGTGGGACGACGAGCG
GGGTCTTATTCGCGGGAGAGAGAAAGTGCCCGGCAGTCAAGGAGGGGTTT
ACGAGGGACACTACCAACGCGGGAGGAGGGACGGTCATGGGCGATTGGAA
CTTCCAGACGGCAGCGAGTATGAGGGTGAGAGGAGTGGACTCCGGGAACA
AATGCGGAGGGGGGGAGATAGGTGTTTTCTGGTGTGCTATTTAGTACCGA
AGATGCGGTTCAATTTTTTTCAGGTTTCGAAAGTTGTAGGCTCGAACGCC
ATTCTTACCGACGATTGCGAAGAGCTAGGGTACTGGAGTTGATAAACAAG
TTTTAGCAGGCAATATTCAGTAAACTCTGGTGAAGAGACAAACAATAGCG
ATGAAATAGTGGTTCTGCGTGGTGCGTCGAGGGGCTTGAGAGAAGGAGAT
ACTCGTGGAACGCGTGAACCCTAAATCATTACAAATGGTTCACTCCGAAC
TGCCGGTGTATCTCCGCCGAAGAGATTTCCCCTATACTCCCGTATACACC
ATCGCCGTATCAAACTAATGACTGTTTCCTAATGTTTCCCCAAGGCGGGA
GTACCCAACTGCACAACTTAAAAAAGACTAGAAAATGCCAAAGAGCCATC
CTACGGTAGGGGGGGGGCGGTATTTGAGTCGCCTTGTTTAACGAAGGAGC
AGCTTTTAGAAAGGGATCGGCCATATATATATATATATGCATTTGTTGCC
CCCCCTTGAACAGAAATCCCATTTCAGCTCGTGGACTGTGCACCTTCAGG
GATGCATAAACACATGCATTTGAAATGGTTTGTATTCGCGCTCTTTTTGC
ACCGTTCTTGCGAAGCGGCCTTCGGTAAACAAATGACCCCCCCTCCATAC
CGTAGGATGACTCCAAGAAAGCCCTAAATCTTGATGAGGTGCGAACATAA
TGTGAGGTGCGAACAAAGACGGATAAAGCACTATGTGTGAAAGTTTTTAC
TGTAAGTAGCAAGGCAGACTGATCGACCTAGGAAGTTATCTAGACGTCTC
CGGGCGACAGACGTGCTCTCCGAACCCATCCATTGCTACCCAAGGGATTT
TTTCCCACTTGTTTCAAAAACTGCAGACTTTAAGCCCCCTAGTCTTTGGC
TTCATCCTGTTGATCGATAAGTGAATCACGAACGACAAAGTTATCCGCTA
CTCGAATGGAAATCTGAACTCTAGTAGAAATAGGGAGGGCGCATAGAATC
CCCTCTCGGGGGGGGCAGAACTACTCCTCTCATTGTTTTCCCGACACCCG
CCTATGGGGGAACCGTATAGTATCGAAGAGACCCACAGAACGTCGCTTTG
AAAGGATCTCGCAGGTACTAGCTCTGTCCCTTATGTCTGACTTTCCGGTT
TCATGAAAATAGAGCATATTATTCGAAGGCCTACACGTTCAGCTTGCATT
TAGATATCTTCAAAATGATCTTTGTATTCGAAGTAGTTGAGAACCGGGTA
TCTCAGCACTTTCCCCCCCGGAAATACAAGGTTTTGCAAAAACAGCCGAA
TTGGCCGAAATCGACTGAAAATCAAGGTTAATGGTTCATAAAGTCCCAAG
GAGACCTCCGATAAAGAAATGGTTTATTGCGCTGTATTCCTTGGCGTTTC
ATACTGCCATCCTCCCCATCAACCCACCAATTGAAGGCCACTTCGTAAGC
GGCTCTGTCAATTGGGACCAACTGGTGCAAAAGCCCCGCACGCTGCTTCT
TTTTGCTGCGGGTATACCTTATGTCTAAATCGTTTCCCCCCAGCGCTTCC
AACACTTTGTTGTACCACTTGAAGAGGCTCTGCCAAACCAACTATAGAGT
ACCCGCATCATACTGGCCGCACATGCTTTTAACCCCCTCGACAAGGGCGT
CTAACGTACGAAGTATGTTTATATGCTCATGAAAAGCATAGTTGCCATTT
CACGACACCTCTGCCCTTTGGCTGGTCATACATCGGGGAGGGGGTTCGAC
GCCACACGGGCATATAAGGGGGTTAAGCAGCCCGTGGTACAGAGAGATGG
GAAAGCTACCTGCATTTTTTCTACCAATCAAATTTTGACTGCGTTAAAAA
GAAGCGCTCCGTGGATTGCGTTACAAGGCATATTTTGAGATAGCTTGGTG
AGTTGTCCTTGATAATAACGGTGACTGCAACACATCACTCTAGCGTCAAA
TCAAGGAGTGGAGGGAGTAACCCGTCACTGCCACTTCTTGCAGAAACGAT
GTGTAGTGTTTTTTATGGTATCCTGTCTACACACTAGACACTAGGTAAGC
AATCAAGATATTTCTTCTTTGACCTTCTGTTCTGTCTTCTTTCGGCGCAG
CGTTTACTGAAGGAGGATGACTCCTCACTCTTTCATTTTCCGCTCGTTTT
TTAAATATCGTTCTTACGGAAAACGAAAAAGGGGCTTGGCGAAACGGGCG
ACAGAACGGCGTGGGAGTGTTCCGCTGTGGTCTTACGCGCCAAGTTTACA
CCGGCAAGTGGGTGGGAGGCGTCAGATGCGGGAGAGGTGAGCAACTCAAA
AGGCAGAAAGGTTGAAGAGGTAGTCCTTTAGAACTGAAGGTAACTTCGTG
TTGCAAATTAGATTTTGCGCTGCAGAACTTCCAAACAAATAGGACCCAAG
TTCGCTGGATGTAGATTTATTGAGTAGATCCGCATTGGTTAGCGGTGAGT
AGAGTGGGGAGGCTTTGATGTTGTGCAAGGTTGTGCATGAACAGGCGATA
CTCGAGATTGGGGATGACCTTTCTTGTTGGGATTGAAGTTTCGTTGAATT
TGAACGGAATAGTTCGAAAATGGTGCCAGCGAAAGGCACTTTCCGGGGAG
AGTTCGTGTCCATCTCACTACTTTTTACTCTGCACAATGAATTTGGAAAC
CCTTGTCATATCTCGATTCGCACGAAATTTGTCTTTCGCTACCACCATTT
TCGAAGTAGTCCATACAAGCTCAACGAAACTTCAATCCCAATAAGAAAGT
TGATCCCCAATCCCGAGTATCGCCTGTGAATGACGCTGTTTATCTTGCTG
TGTGAACCGCCAAGTTATAGCACTAGTATAGTAGGGTGTTTGCGCAAAGC
AAGTTCCTTTTGTAAACTTCGAGTACGCTCCGCGTCCCAGTATCCCAATC
CACTGATGCCTTGTTACAAAAGGAATCCGTCTTGGTTTTCTTTTTGATAC
CCCCCGCCACCCCCACTTCCCCGTCGTAGGTGTGTGCGAGTATGCCGACG
GCAGCAGATACGAGGGTCTTTGGCTTGACAATCTCAGGCATGGAGCGGGC
GTGCTCACCTCCCCAGGGGGCGACCCGCAAGTCGGGCAGTGGAATCTAGG
CGAACTTCAAGCGCCCGTATTATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4726:5496..14470-

>mRNA_H-paniculata_contig4726.11748.1 ID=mRNA_H-paniculata_contig4726.11748.1|Name=mRNA_H-paniculata_contig4726.11748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5958bp|location=Sequence derived from alignment at H-paniculata_contig4726:5496..14470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGTGGTGTGGAAGAAAGTTGAGAATTGTGCGCCAAAAGTCGCAGG
ATACGAAAGTGTCGCGGGTGCCGTTCCTTGCGTCGTAAAAACTAGATGAG
TGTGGTGTGGAAGAAAGTTGAGAATTGTGCGCCAAAAGTCGCAGGATACG
AAAGTGTCGCGGGTGCCGTTCCTTGCGTCGTAAAAACTAGGGTGTACTTG
GTGGGTGGAGCTTCAGCAACGCGAAAGCAGGATCCCGACATTTCCATCGG
CGTGTACAACTGCAACAGCTATGGCATCAACAGTACCCCAGCATCATCGA
CAAACTCTGGACACTCAAACAACAAAGAACATCGAGCTAGTGACCACGCC
GGTTCAAATCTTCCGGCATCAACAGATGCAATAACTGCTACGAGATTCAG
TGGTGTTTTCGGCGCGGTCCAAGCGGGAGACATACCGGCATCGAGAATAG
GACACGCAGCAGTGACCTCCCCTAGATCGACGATAATCCTCTTTGGCGGA
GAAGTATGCTCAACGGCCCGTGGTCGCGACTCGTACTGCTCAAAGCTCTG
CGACTTGTTTGAGTGTACCCTCAAACCCCACCAGAGTGCACCTCACGAGG
AAACACCGTCGTCCACATACGATGAGCCACCGGATACAGCAGGTGTACTT
GGTGGGTGGAGCTTCAGCAACGCGAAAGCAGGATCCCGACATTTCCATCG
GCGTGTACAACTGCAACAGCTATGGCATCAACAGTACCCCAGCATCATCG
ACAAACTCTGGACACTCAAACAACAAAGAACATCGAGCTAGTGACCACGC
CGGTTCAAATCTTCCGGCATCAACAGATGCAATAACTGCTACGAGATTCA
GTGGTGTTTTCGGCGCGGTCCAAGCGGGAGACATACCGGCATCGAGAATA
GGACACGCAGCAGTGACCTCCCCTAGATCGACGATAATCCTCTTTGGCGG
AGAAGTATGCTCAACGGCCCGTGGTCGCGACTCGTACTGCTCAAAGCTCT
GCGACTTGTTTGAGTGTACCCTCAAACCCCACCAGAGTGCACCTCACGAG
GAAACACCGTCGTCCACATACGATGAGCCACCGGATACAGCATCTGCCGC
AAACAAAGGCACAAAAGCTGGGGTGGCGGGAGGAGGAGCAGTGCCACCCG
CGATCATTTTACCGGACAACCCCCCACCCATGGCGTTCTTTGCTTCGTGT
GCTGCTATTGTGAAAGGAGAGTGGGGCATGCTTGTACACGGCGGGACAGC
GGGGCTGGCAGCGGAACAGGGGGACGGTGGGGGTGAAGGGGGGGCGGAGG
GGAGTAGGGCGACGGAGGCGGGGGCTGGCCGGTTGTCACGGGATCTATGG
GTGCTCCGACTAGACTTTGAAGAAAGTGACCGAGCTGATGATCAACAACA
GCATTGCCATGGCAGGCATCGTGCGCCCAATTTTTCTTGGAAGCGCCTGG
TCCCGGAGGGCGAGGGTCTGCCGCAAACAAAGGCACAAAAGCTGGGGTGG
CGGGAGGAGGAGCAGTGCCACCCGCGATCATTTTACCGGACAACCCCCCA
CCCATGGCGTTCTTTGCTTCGTGTGCTGCTATTGTGAAAGGAGAGTGGGG
CATGCTTGTACACGGCGGGACAGCGGGGCTGGCAGCGGAACAGGGGGACG
GTGGGGGTGAAGGGGGGGCGGAGGGGAGTAGGGCGACGGAGGCGGGGGCT
GGCCGGTTGTCACGGGATCTATGGGTGCTCCGACTAGACTTTGAAGAAAG
TGACCGAGCTGATGATCAACAACAGCATTGCCATGGCAGGCATCGTGCGC
CCAATTTTTCTTGGAAGCGCCTGGTCCCGGAGGGCGAGGGACCCCCACCG
ACGGCGCATCACTCCGCTACGCCGTTGAGCAACGGTGAGACCGTCGTGTT
CGTGGGCGGGAAGGATCGCTGCGGATCTGTGATATTTCTGCTGGACACGG
TTGACTTGAGGTGGTCTTCAGTGGACGTTGCAAACAGTGGTGGTATACGT
GGACGGTGCCTGCTGCATGGGGCTGTTTCGATCAGCGGTCTCGAAGCCCA
CAGGTACATAACAATACACCACAAGGCGCCTTTTGATCGGGCTGTGCGAC
CCCCACCGACGGCGCATCACTCCGCTACGCCGTTGAGCAACGGTGAGACC
GTCGTGTTCGTGGGCGGGAAGGATCGCTGCGGATCTGTGATATTTCTGCT
GGACACGGTTGACTTGAGGTGGTCTTCAGTGGACGTTGCAAACAGTGGTG
GTATACGTGGACGGTGCCTGCTGCATGGGGCTGTTTCGATCAGCGGTCTC
GAAGCCCACAGGTACATAACAATACACCACAAGGCGCCTTTTGATCGGGC
TGTGCGCCAGATGTACGAAGAAGCAAGAGGCATAGATGAGGTGTGCTCTA
GCAGCCCAATCGAAGCCTTGGACTCGGTGGGAGATTCGTTTGTATGTAGA
GAAACGACTCATCTCTGGCGACCCATACTAAGGGCTTCCGATAGGATAGC
AACGCTATCAACTGGCGCACGAAATGAAGTAGAGGGAAACGGAGGAACAG
AAGGAGCAGGAGAAATAGGAAAGAGAAGTACAAAGAACGCCGCTGAGGAC
GGGAAACCGGGTGGAAAAGGTGAAAACGATGGTGGTGACGGCGACGATAA
CTGCGGTGGCGGAAAATCTGTTTACGAGTCTGTTCTTATTTTCGGGGGTG
TCGGTGACGTGGGAATTCGAGGGCCAGATGTACGAAGAAGCAAGAGGCAT
AGATGAGGTGTGCTCTAGCAGCCCAATCGAAGCCTTGGACTCGGTGGGAG
ATTCGTTTGTATGTAGAGAAACGACTCATCTCTGGCGACCCATACTAAGG
GCTTCCGATAGGATAGCAACGCTATCAACTGGCGCACGAAATGAAGTAGA
GGGAAACGGAGGAACAGAAGGAGCAGGAGAAATAGGAAAGAGAAGTACAA
AGAACGCCGCTGAGGACGGGAAACCGGGTGGAAAAGGTGAAAACGATGGT
GGTGACGGCGACGATAACTGCGGTGGCGGAAAATCTGTTTACGAGTCTGT
TCTTATTTTCGGGGGTGTCGGTGACGTGGGAATTCGAGGGGAAGCCACAG
TCCTCTGGGCCGACGGCACCGTATCTCCTCTCCCCCTTGCTGCTCGCAAC
CCATCAACATCATCAACGTCATCATTGGTATCACCGACATTGTCTTTATC
ATCGCCACCGCATTTAGTAGAGCCGGGTCCTCGTTTTAACCACGCGATGG
TGTCGATAAATGAGGGTCAACAGACGATCGTATTCGGAGGGTGCCGCGCA
GACGGCACCAGAGCGCAGGACGCTTTCATGCTCGACTTTTCAGACGACTT
AACGAGGGTGGGCAGTGGTGGGGAGGAAGTCGGGGGCATAGACGATGTCA
TGGAAGGAAACGGGACCTCTGAGGAAGCCACAGTCCTCTGGGCCGACGGC
ACCGTATCTCCTCTCCCCCTTGCTGCTCGCAACCCATCAACATCATCAAC
GTCATCATTGGTATCACCGACATTGTCTTTATCATCGCCACCGCATTTAG
TAGAGCCGGGTCCTCGTTTTAACCACGCGATGGTGTCGATAAATGAGGGT
CAACAGACGATCGTATTCGGAGGGTGCCGCGCAGACGGCACCAGAGCGCA
GGACGCTTTCATGCTCGACTTTTCAGACGACTTAACGAGGGTGGGCAGTG
GTGGGGAGGAAGTCGGGGGCATAGACGATGTCATGGAAGGAAACGGGACC
TCTGAGCAGGGCAGCACGACCGTGACGTTGGACAATGGAGACATTTACAC
CGGCCATCTCGACGAACAAGGCCACCGACATGGCCGAGGACGCTGTGAAT
TCACATCCACGCCGCCTGCCGCCGCCGCCGCCGCCACTCGAAACAACGAC
ACCACAGCCCCACTCGGAGGAGGAAGAGGGGGTAGGGTCTACGACGGGGA
GTGGAAAAATGACCTGCCACATGGATACGGCGAGTGTGTTTACCCTACCC
GGTGGTCGGGAAAGGCGGTAGACTCTAGTGCGGAAGAAAGAGTTAATATC
TTCAGCGGTAGCAGCAGTGACGATGGTGGCGACACAACGGCTGTTGTAAG
AGACGGTCAACCCCCGGTGGTACTGTTGAACTACAAAGGAGATTGGAATC
ACGGCGTGCGTGAAGGGCACGGCGCCTGCTCTTTCGTCTTCGGCGTTGCG
AACTGTTCAACGAAACATGCGCGCAGCGGCATCTCCAATGGCTACGCAGG
GCAGCACGACCGTGACGTTGGACAATGGAGACATTTACACCGGCCATCTC
GACGAACAAGGCCACCGACATGGCCGAGGACGCTGTGAATTCACATCCAC
GCCGCCTGCCGCCGCCGCCGCCGCCACTCGAAACAACGACACCACAGCCC
CACTCGGAGGAGGAAGAGGGGGTAGGGTCTACGACGGGGAGTGGAAAAAT
GACCTGCCACATGGATACGGCGAGTGTGTTTACCCTACCCGGTGGTCGGG
AAAGGCGGTAGACTCTAGTGCGGAAGAAAGAGTTAATATCTTCAGCGGTA
GCAGCAGTGACGATGGTGGCGACACAACGGCTGTTGTAAGAGACGGTCAA
CCCCCGGTGGTACTGTTGAACTACAAAGGAGATTGGAATCACGGCGTGCG
TGAAGGGCACGGCGCCTGCTCTTTCGTCTTCGGCGTTGCGAACTGTTCAA
CGAAACATGCGCGCAGCGGCATCTCCAATGGCTACGACTGCCCTATTTCC
TCCCATGTGTACGAGGGTGTATGGGTAAACGGAAGGCCGCAAGGAAGAGG
GATCCTTACCCTGCGCTCGACGCTGGACACAACAATGACAGCCGATCTGT
TGGATGTGAGGACAGGCCAACGCCAAGGCAGTAAGGCCGCGGGCAGGGAA
AGAGGGTGGGGCGGCGGCGGCGGTGGTGGTGGTGGCGGATCGGTTATTGA
GGGATTGTGGGACGACGAGCGGGGTCTTATTCGCGGGAGAGAGAAAGTGC
CCGGCAGTCAAGGAGGGGTTTACGAGGGACACTACCAACGCGGGAGGAGG
GACGGTCATGGGCGATTGGAACTTCCAGACGGCAGCGAGTATGAGGACTG
CCCTATTTCCTCCCATGTGTACGAGGGTGTATGGGTAAACGGAAGGCCGC
AAGGAAGAGGGATCCTTACCCTGCGCTCGACGCTGGACACAACAATGACA
GCCGATCTGTTGGATGTGAGGACAGGCCAACGCCAAGGCAGTAAGGCCGC
GGGCAGGGAAAGAGGGTGGGGCGGCGGCGGCGGTGGTGGTGGTGGCGGAT
CGGTTATTGAGGGATTGTGGGACGACGAGCGGGGTCTTATTCGCGGGAGA
GAGAAAGTGCCCGGCAGTCAAGGAGGGGTTTACGAGGGACACTACCAACG
CGGGAGGAGGGACGGTCATGGGCGATTGGAACTTCCAGACGGCAGCGAGT
ATGAGGGGGCTTGGCGAAACGGGCGACAGAACGGCGTGGGAGTGTTCCGC
TGTGGTCTTACGCGCCAAGTTTACACCGGCAAGTGGGTGGGAGGCGTCAG
ATGCGGGAGAGGGGCTTGGCGAAACGGGCGACAGAACGGCGTGGGAGTGT
TCCGCTGTGGTCTTACGCGCCAAGTTTACACCGGCAAGTGGGTGGGAGGC
GTCAGATGCGGGAGAGGTGTGTGCGAGTATGCCGACGGCAGCAGATACGA
GGGTCTTTGGCTTGACAATCTCAGGCATGGAGCGGGCGTGCTCACCTCCC
CAGGGGGCGACCCGCAAGTCGGGCAGTGGAATCTAGGCGAACTTCAAGCG
CCCGTATTATGAGTGTGTGCGAGTATGCCGACGGCAGCAGATACGAGGGT
CTTTGGCTTGACAATCTCAGGCATGGAGCGGGCGTGCTCACCTCCCCAGG
GGGCGACCCGCAAGTCGGGCAGTGGAATCTAGGCGAACTTCAAGCGCCCG
TATTATGA
back to top