mRNA_H-paniculata_contig4724.11746.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4724.11746.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI) HSP 1 Score: 103 bits (256), Expect = 6.450e-18 Identity = 384/801 (47.94%), Postives = 433/801 (54.06%), Query Frame = 1
Query: 3889 LSGPEVXVKTGDTDISAGLAAAGAATVGAIGVGLGSLVGKGEAEVP--DASVSVEAPSV-DVDVKKPKKGLFGAMFKKSSMREKVSVSVLVRRTSFLLSQISGGDVSLPSASGDVSLPSXXXXXXXXXXXXXXXSASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLSG----------------------PDVXXXXXXXXISAGLAAAGAATVGAIGVGLGSLVGKGEAEVCSSASPVSVEAPSV-DVDVKKPKKGLFGGMFKKPSMSGKVSISVPISGGDVDIXXXXXXXXXXXXXXXXXXXSGDISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLSGPDMD------------------------------------VKTGDTDISAGLAAAGAATVGAIGVGLGSLVGKGEAEVP--DASVSVEAPSVDVDVKKPKKSLFGGMFKKPSMSGKVSMSVPVRRTSFLLSQISAGDVDIP------DVSXXXXXXXXXXXXXXXSGDVSLPQVTXXXXSXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD----------------------------------LSGPDVAVKTGDTDISAGLAAAGAATVGAIGVGLGSLVGKGEAEVPDASVSVEAPSVDVDVK--------------KPKKGLFGGMFKKPSMSGKVSISVLVRRTSFLLSQISAGDVDIPDVS 5937
++ P+V V+ GDT ++AGLAA G A VGAIG +G K +AE+P D SV P V VDVKKPKKG+FG +F S + KV V DVS+P S XXXXXXXXXXX XXX + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VDL+G PDV ++AGLAA G A VGAIG +G K +AE+ S SV P V VDVKKPKKGLFGG+F SGK + VP D D+ S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VD+ P V+ GDT ++AGLAA G A VGAIG +G K +AE+P D SV P VDVKKPKK LFGG+F K + VP + +SA DV + DVSXXXXXXXXXXXXXXX + X XX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D ++ PDV V+ GDT ++AGLAA G A VGAIG +G K +AEV SV S D+DVK KP+KGLFG FKK +SGK ++ DV +PDVS
Sbjct: 1076 MTAPDVKVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGMFGGLF--GSGKAKVEVP--------------DADVSVPEVSXXXXXXXXXXXXXXXXXXGXXXXXN--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDVPLGSAEAPSVDLAGXXXXXXXXXXXXXXXXXXXXTAPDVKVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGLFG----SGKAKVEVP----DADVSVPEV--------------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVDIDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGGDTSLAAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDLDASVSVPDASVDVKKPKKGLFGGLF-----GSKAKIEVPD-------ADVSAPDVTVTVPDMGGDVSXXXXXXXXXXXXXXXXXXXXXXXXSLKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEMDAPSGXXXXXXXXXAGKMPSVEGGVGGELSSGDVSVTAPDVKVEGGDTSLTAGLAAGGVAAVGAIGAAVGLSGDKPDAEVDAVMPSVGDVSADIDVKMDDVDAKAPSSEILKPRKGLFGLSFKK--LSGKKL-------------KVPDADVAVPDVS 1809
BLAST of mRNA_H-paniculata_contig4724.11746.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.150e-11 Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 541 DVDLSGPDVDVKTGDTDISAGLAAAGAATVGAIGVGLGSLVGKGEAEVP--DASISVEAPSV-DVDVKKPKKGLFGGM-FKKPSMSGKVSVPSGDVDIPD 828
DV ++ PDV V+ GDT ++AGLAA+G A VGA+G + K +A++P D SV P V +DVKKP+KGLFGG+ FKKPS+ GK VP DV P+
Sbjct: 1732 DVSVTAPDVKVEGGDTSLTAGLAASGVAAVGAVGAAVDLSGDKPDAKLPSGDVDASVSVPDVPSLDVKKPRKGLFGGLSFKKPSLKGKAMVPDVDVAAPN 1831
BLAST of mRNA_H-paniculata_contig4724.11746.1 vs. uniprot
Match: A0A6H5JY67_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 6.950e-6 Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 4447 VDLSGPDVXXXXXXXXISAGLAAAGAATVGAIGVGLGSLVGKGEAEVCSSASPVSVEAPSVDVDVKKPKKGLFGGM-FKKPSMSGK 4701
V ++ PDV ++AGLAA+G A VGAIG +G K +AEV S VS+ P VD++KP+K LFGG+ FKKP + G+
Sbjct: 745 VSVTAPDVQVEGGDTSLTAGLAASGVAIVGAIGAAVGLSGDKPDAEVPSGVVHVSLSIPEASVDIRKPRKVLFGGLPFKKPPLMGR 830 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4724.11746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4724.11746.1 >prot_H-paniculata_contig4724.11746.1 ID=prot_H-paniculata_contig4724.11746.1|Name=mRNA_H-paniculata_contig4724.11746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2070bp GDTDISAGLAAAGAATVGAIGVGLGSLVGKGEAEVPDASVSVEAPSVDVDback to top mRNA from alignment at H-paniculata_contig4724:158..15326- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4724.11746.1 ID=mRNA_H-paniculata_contig4724.11746.1|Name=mRNA_H-paniculata_contig4724.11746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15169bp|location=Sequence derived from alignment at H-paniculata_contig4724:158..15326- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4724:158..15326- >mRNA_H-paniculata_contig4724.11746.1 ID=mRNA_H-paniculata_contig4724.11746.1|Name=mRNA_H-paniculata_contig4724.11746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=12420bp|location=Sequence derived from alignment at H-paniculata_contig4724:158..15326- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |