mRNA_H-paniculata_contig1183.1174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1183.1174.1
Unique NamemRNA_H-paniculata_contig1183.1174.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1183.1174.1 vs. uniprot
Match: A0A6H5KVH9_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVH9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.490e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 3 
Query:  126 TGDVKYWDSSYGKALDDLEGHVMGAEGGVGDSREDSLA 239
            +GDVKYWD+SYGK LD L+G +   E G GD+RED+++
Sbjct:    3 SGDVKYWDTSYGKTLDQLDGFIATMESGSGDAREDAMS 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1183.1174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVH9_9PHAE1.490e-657.89t-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1183contigH-paniculata_contig1183:27055..27822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size244
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1183.1174.1prot_H-paniculata_contig1183.1174.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1183 27165..27822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.0468163-UTR-H-paniculata_contig1183:27054..271641622928894.0468163-UTR-H-paniculata_contig1183:27054..27164Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1183 27055..27164 +
1691480659.4248455-UTR-H-paniculata_contig1183:27054..271641691480659.4248455-UTR-H-paniculata_contig1183:27054..27164Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1183 27055..27164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.0592592-CDS-H-paniculata_contig1183:27164..272181622928894.0592592-CDS-H-paniculata_contig1183:27164..27218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1183 27165..27218 +
1691480659.435743-CDS-H-paniculata_contig1183:27164..272181691480659.435743-CDS-H-paniculata_contig1183:27164..27218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1183 27165..27218 +
1622928894.0925136-CDS-H-paniculata_contig1183:27744..278221622928894.0925136-CDS-H-paniculata_contig1183:27744..27822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1183 27745..27822 +
1691480659.445221-CDS-H-paniculata_contig1183:27744..278221691480659.445221-CDS-H-paniculata_contig1183:27744..27822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1183 27745..27822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1183.1174.1

>prot_H-paniculata_contig1183.1174.1 ID=prot_H-paniculata_contig1183.1174.1|Name=mRNA_H-paniculata_contig1183.1174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MASGNTGDVKYWDSSYGKALDDLEGHVMGAEGGVGDSREDSLAS
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mRNA from alignment at H-paniculata_contig1183:27055..27822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1183.1174.1 ID=mRNA_H-paniculata_contig1183.1174.1|Name=mRNA_H-paniculata_contig1183.1174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=768bp|location=Sequence derived from alignment at H-paniculata_contig1183:27055..27822+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAACCCGCATCAAGGCTATCACCTCGCGGAGGTTCGACCCGAGGGGCCT
CTGTAGCTCAAAGCCCGAAGGAACAGGGGACCAGGGCGCATCGCCTTTTG
GGGGGCCAAGATGGCTAGCGGTAACACGGGAGACGTCAAGTACTGGGACT
CCAGCTATGGAAAGGTGCTATAAGTTTGTTTGTTGTGTGTGCAGGGGGCA
TGTATCAAGGACAGGTAGTCCTCTGGGGAGCAAGTGTACCGGCCTGGGAA
AGTATAAAAAATGACCAAGTGCGGCTTGCTTGCTTGTGCAGTAGACGACT
GCTGGTGAGATGTTTCAGTCGTTCGAACCCGATGCGATGACTTGCCTCTA
TCAATCTGTCCACTGCCAACACATACGACAAGTCAATGCAGGGGTAGCAT
TCGTGTAGGTTCTTCAGCAAAAGGCGAGTCGCTGTATTTGCAATAAGCCC
ACGCACCTCTTTCCTTTTTTTTCTGCATACATAGCTTGGTGATGGGTAAC
TCGGCAACATATATAGAGTAATATCCACTGTGCGTTTCCTTGTTTATATA
TGAAAGCTCTTGCAATTATTTCCTGTACGGCGAGTGGCGTGTGATATGAC
TTATTTTATTACCGGATCTCCTTGTTACTGTTGTCAATATTTAACGTCAT
GTGTTGCTATGATGTTACGATTCGTTGTTGCTGTTGAAAGGCGCTGGATG
ATCTGGAGGGGCACGTGATGGGGGCGGAGGGGGGCGTGGGCGACTCCCGG
GAAGACTCGCTTGCGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1183:27055..27822+

>mRNA_H-paniculata_contig1183.1174.1 ID=mRNA_H-paniculata_contig1183.1174.1|Name=mRNA_H-paniculata_contig1183.1174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig1183:27055..27822+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAGCGGTAACACGGGAGACGTCAAGTACTGGGACTCCAGCTATGG
AAAGATGGCTAGCGGTAACACGGGAGACGTCAAGTACTGGGACTCCAGCT
ATGGAAAGGCGCTGGATGATCTGGAGGGGCACGTGATGGGGGCGGAGGGG
GGCGTGGGCGACTCCCGGGAAGACTCGCTTGCGAGCGCGCTGGATGATCT
GGAGGGGCACGTGATGGGGGCGGAGGGGGGCGTGGGCGACTCCCGGGAAG
ACTCGCTTGCGAGC
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