mRNA_H-paniculata_contig4719.11737.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4719.11737.1
Unique NamemRNA_H-paniculata_contig4719.11737.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4719.11737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4719contigH-paniculata_contig4719:3420..6132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size246
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4719.11737.1prot_H-paniculata_contig4719.11737.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4719 3420..4791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930403.6332219-CDS-H-paniculata_contig4719:3419..34801622930403.6332219-CDS-H-paniculata_contig4719:3419..3480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4719 3420..3480 -
1691481275.93272-CDS-H-paniculata_contig4719:3419..34801691481275.93272-CDS-H-paniculata_contig4719:3419..3480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4719 3420..3480 -
1622930403.6455922-CDS-H-paniculata_contig4719:4720..47911622930403.6455922-CDS-H-paniculata_contig4719:4720..4791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4719 4721..4791 -
1691481275.9421763-CDS-H-paniculata_contig4719:4720..47911691481275.9421763-CDS-H-paniculata_contig4719:4720..4791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4719 4721..4791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930403.656008-UTR-H-paniculata_contig4719:4791..48281622930403.656008-UTR-H-paniculata_contig4719:4791..4828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4719 4792..4828 -
1691481275.9518547-UTR-H-paniculata_contig4719:4791..48281691481275.9518547-UTR-H-paniculata_contig4719:4791..4828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4719 4792..4828 -
1622930403.6732967-UTR-H-paniculata_contig4719:6057..61321622930403.6732967-UTR-H-paniculata_contig4719:6057..6132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4719 6058..6132 -
1691481275.9603887-UTR-H-paniculata_contig4719:6057..61321691481275.9603887-UTR-H-paniculata_contig4719:6057..6132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4719 6058..6132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4719.11737.1

>prot_H-paniculata_contig4719.11737.1 ID=prot_H-paniculata_contig4719.11737.1|Name=mRNA_H-paniculata_contig4719.11737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MISIPHRVTGGRRNVDELASTNTWSIITSPTDIMKKNRNQRVSF
back to top

mRNA from alignment at H-paniculata_contig4719:3420..6132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4719.11737.1 ID=mRNA_H-paniculata_contig4719.11737.1|Name=mRNA_H-paniculata_contig4719.11737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2713bp|location=Sequence derived from alignment at H-paniculata_contig4719:3420..6132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCGATTCGACGAACGTAATCGGCCGTGGTGGGCAGTCACTTACTCCAG
GTTCGGAAGTGTGAAGTCCGAAAAGGTGAGAACCAATCGACAGCAGCGCT
CTCAACTATTTGTTATAATCATGTTCTTGTTCCTTCCGATCGAGAAATTT
TCGAGAAGCACCTGTTAAGGAAGGCCTGCAGATACAAAAAAAAACGACAG
TAGGGTTGCAATATTCTCCTGTTTAATCCTTCGGGGGCTCACACCTCGAA
AATCTGTTTTTTTCTGGCATCTGCTTCTTGGCCATGTTTCCCACGCAAGT
AGGCGTTCATGTGCTGGAAAATGGCAATAGAAGCCACTGATTGTACAGGT
GAGGTAGTGATCTCTTGTCCTGTCTGGGAAGAGCATTTGTCGGCATATTG
CCCTCCCCCGAAAGAGCAACAGTGGTTGATTCGCGCTTATCTTGTGCTGC
GGAAGGGGTAATAGTCCGGTGCTGATAAGGATTAGTAGAACTGTAATGGG
TGCACAGCAGCTCTAACTTACAGCTAAATGCATTTCTATTTTACTTACAC
TTATTAGCATTGGCCTAAGGCTAAGTCTAAGGCTAAGACTAGGGCTATTC
ACGAGGAGAATATACCAGCCCTAATATCGAGGTGACAGTTTCTATAGGCG
CCCCTTAAACTCCGTTCTAGTCGACATAAGTGATTTGAAGAAGTCAAGGG
TGGAGACATATTCATTCGGCAAACACTCGCAGTTAGTGTCTGATATGAGG
CCAATGGTTTCCTCACTTGAAAGAAAACACTCAAAATTCAGAGTAAGGTA
TTTTGGATTGTGGGTGTGATTCGGTCGTTAATGCTTACTTTTCCAAAGAT
GTCTAGCACTTCAAACTACGAAATTTTGTTCATGCTGATTTGATTACCGC
GCGACACGAGACGCTTTAGAGGAGCGGGGACAGCACCCGTGCGTCATTTT
CCAATTCTGATGAGACAATGAAAACACGAGTTAGATCTCGGTGTGGGTGT
CGTGCCATGTGGCGTCTGTATATATACTTCATTCATGGGGTTTGAGACCA
CAAGGCACTCCGAACGTGTCCGGTCGGCCCCGTCTTTCGACACTTCATGA
TTTTGGTCACCTTGGATTCTAGGTGCTTTCATCTGTTTGGTTACTTTCTT
CTGCCCTGCGGCAGACCAGGGCGTGGATTCATCTAGGGTTATAGAGCAGT
GGGTGGGTTTGTCTTCCCACTACGTTTCCATGATAGTCCCTCCCCATGCT
CCATTTAGCCTTAACAAGATATCGACGTTGCTCTGCTTTCTGGACTCTGA
ACAGAGTACGGCGACGTTTTTGACGAAAAATAAGCTACTCGATGATCTCG
ATTCCACACCGCGTAACTGGAGGAAGAAGAAATGTTGACGAGCTTGCTTC
AACAAACACCTGGTAAGGGCAAGAGTTAGGGCTATTTTGAGGACTGTATT
CGGGCGACCATACATCCACAGTACATCGTACATATATATATATATATATA
TATATATATCGGTTGGCGGTCAAACCAATGTATGGATGTTTCGCCCTGTA
TACTAAACTCAATATTCAAAGTGAGTACACATGATATAATCGTTATCCAA
TGGAATATGTAGTTCGATTTTGAAAAGATACGTCGCTAATACGCATATGG
TGTTGTCTTCGGCGGGGCTCCCTCATCAACTGGGCGGGGCAGTTTAGCTC
GCGCTAAGGCGCTCATCTGGCGCTTCGCGCGGCCGGCTGAGTTCGCTGCC
ACCAATACGTTACCAAGATATCTGTAGTTTATTAGTAGAGTATATCGATT
GTTGACTGACTCCGCCGACCAATAAAAAATGGCTGAACTGAGCGATTACC
GATACACAACTCTAGTCATCCTACACTATACTCTGTTCATGGAAACGCTA
AACGCTAAACGTGACAAGCGAAACATGGCGCACTACGTTGTTCGTGGTTG
GGCCAATGATTACCTGCAGTTTATTTCATGCATGGTCGCTTTGCAACAAA
CCGAATTCGCCCTAGCATGCTTCCCTATAGAGGTTTGCGAATTGGATTCA
AAAGGACAATGTTGTTGCTCGTTCAATTTGTTTTTGCTGTATCGGTTGAT
ACCAAGAAAAACGACCTATTCATTCTCGATGACTATATATAACACATCGA
TTCGATCAACGCGATTCCAGCATTTCATCCTTGGAAGGTTTGGCTCTCTG
TCTGTCCGTCTGTTTGTCTGTCTCTCTATTTGCGTTGTTGCTATGGATGT
CGCTTCTTCTGGAGGAGCTTGATTGCTTGACGCTAACACGCTACGTTCCT
CAGGCACAGCACCGCGTAGGAGTATCTGACACAGGATAGAACACATTCTA
GAATCTCTGTCGGCATCAGAACAGAGGTGCCATTCGTAGCGAGAACATTT
AGATAGATGTCCAGTTTAGAAAAACTCGCGACTTCTGACACCTTGCCAGA
ATATGTAGTGGTTTAGACAACGTGATTTTAAAAAAGAAAAAGTCTAGGAC
GTATAGCACTCGTTCTGTTCTATCCGACGTGTGGAGTATCTCCTCGTTGA
AAGCTGCTCTGTGCTGTTACTGATATCCGTGTGCGAGAACATTCAGCATA
TATGCACCTGCGACAACCTACACGGTATTCACGTCTCTTCTGCTCAGGAT
AGGTCGATCATCACAAGTCCAACGGATATCATGAAGAAGAACCGCAACCA
GCGCGTTTCATTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4719:3420..6132-

>mRNA_H-paniculata_contig4719.11737.1 ID=mRNA_H-paniculata_contig4719.11737.1|Name=mRNA_H-paniculata_contig4719.11737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig4719:3420..6132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCTCGATTCCACACCGCGTAACTGGAGGAAGAAGAAATGTTGACGA
GCTTGCTTCAACAAACACCTGATGATCTCGATTCCACACCGCGTAACTGG
AGGAAGAAGAAATGTTGACGAGCTTGCTTCAACAAACACCTGGTCGATCA
TCACAAGTCCAACGGATATCATGAAGAAGAACCGCAACCAGCGCGTTTCA
TTTGTCGATCATCACAAGTCCAACGGATATCATGAAGAAGAACCGCAACC
AGCGCGTTTCATTT
back to top