mRNA_H-paniculata_contig47168.11732.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47168.11732.1
Unique NamemRNA_H-paniculata_contig47168.11732.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47168.11732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47168contigH-paniculata_contig47168:200..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930403.2879624-CDS-H-paniculata_contig47168:199..6161622930403.2879624-CDS-H-paniculata_contig47168:199..616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47168 200..616 +
1691481275.7695382-CDS-H-paniculata_contig47168:199..6161691481275.7695382-CDS-H-paniculata_contig47168:199..616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47168 200..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47168.11732.1prot_H-paniculata_contig47168.11732.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47168 200..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47168.11732.1

>prot_H-paniculata_contig47168.11732.1 ID=prot_H-paniculata_contig47168.11732.1|Name=mRNA_H-paniculata_contig47168.11732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MQRGRLLVRQLDSKVMAPNQDPDEYLTQIFHLRDELECIGKPFSEPRITD
IILEGPTDDYDQIKFATETDPDFPLKDIQTTMRNVYANRIACGSISSLPS
KGRESVMMASSSASEGICNYCRKPGHIKSECRKLKRRQQ
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mRNA from alignment at H-paniculata_contig47168:200..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47168.11732.1 ID=mRNA_H-paniculata_contig47168.11732.1|Name=mRNA_H-paniculata_contig47168.11732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig47168:200..616+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGCGGCCGTCTCCTTGTGCGCCAGCTGGACAGCAAGGTGATGGC
GCCCAATCAAGACCCTGATGAGTACCTGACCCAGATATTCCATCTGCGCG
ACGAGCTCGAGTGCATCGGGAAACCTTTCTCGGAACCGCGCATAACGGAT
ATAATTCTTGAAGGGCCTACAGACGACTACGACCAGATCAAATTCGCCAC
CGAAACGGATCCCGATTTCCCCCTGAAAGACATCCAAACCACGATGAGAA
ACGTGTACGCCAACCGCATTGCGTGCGGTTCAATTTCATCCTTACCCAGC
AAAGGTCGTGAGTCAGTCATGATGGCCTCGTCGTCGGCTTCCGAAGGTAT
CTGTAATTACTGCCGAAAACCTGGACATATCAAGAGCGAGTGTAGAAAGC
TGAAGCGGCGGCAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig47168:200..616+

>mRNA_H-paniculata_contig47168.11732.1 ID=mRNA_H-paniculata_contig47168.11732.1|Name=mRNA_H-paniculata_contig47168.11732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig47168:200..616+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGCGGCCGTCTCCTTGTGCGCCAGCTGGACAGCAAGGTGATGGC
GCCCAATCAAGACCCTGATGAGTACCTGACCCAGATATTCCATCTGCGCG
ACGAGCTCGAGTGCATCGGGAAACCTTTCTCGGAACCGCGCATAACGGAT
ATAATTCTTGAAGGGCCTACAGACGACTACGACCAGATCAAATTCGCCAC
CGAAACGGATCCCGATTTCCCCCTGAAAGACATCCAAACCACGATGAGAA
ACGTGTACGCCAACCGCATTGCGTGCGGTTCAATTTCATCCTTACCCAGC
AAAGGTCGTGAGTCAGTCATGATGGCCTCGTCGTCGGCTTCCGAAGGTAT
CTGTAATTACTGCCGAAAACCTGGACATATCAAGAGCGAGTGTAGAAAGC
TGAAGCGGCGGCAACAGATGCAGCGCGGCCGTCTCCTTGTGCGCCAGCTG
GACAGCAAGGTGATGGCGCCCAATCAAGACCCTGATGAGTACCTGACCCA
GATATTCCATCTGCGCGACGAGCTCGAGTGCATCGGGAAACCTTTCTCGG
AACCGCGCATAACGGATATAATTCTTGAAGGGCCTACAGACGACTACGAC
CAGATCAAATTCGCCACCGAAACGGATCCCGATTTCCCCCTGAAAGACAT
CCAAACCACGATGAGAAACGTGTACGCCAACCGCATTGCGTGCGGTTCAA
TTTCATCCTTACCCAGCAAAGGTCGTGAGTCAGTCATGATGGCCTCGTCG
TCGGCTTCCGAAGGTATCTGTAATTACTGCCGAAAACCTGGACATATCAA
GAGCGAGTGTAGAAAGCTGAAGCGGCGGCAACAG
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