mRNA_H-paniculata_contig4713.11729.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4713.11729.1
Unique NamemRNA_H-paniculata_contig4713.11729.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4713.11729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4713contigH-paniculata_contig4713:2962..3891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4713.11729.1prot_H-paniculata_contig4713.11729.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4713 2967..3891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930402.9990046-UTR-H-paniculata_contig4713:2961..29661622930402.9990046-UTR-H-paniculata_contig4713:2961..2966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4713 2962..2966 +
1691481275.619473-UTR-H-paniculata_contig4713:2961..29661691481275.619473-UTR-H-paniculata_contig4713:2961..2966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4713 2962..2966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930403.019708-CDS-H-paniculata_contig4713:2966..31201622930403.019708-CDS-H-paniculata_contig4713:2966..3120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4713 2967..3120 +
1691481275.632569-CDS-H-paniculata_contig4713:2966..31201691481275.632569-CDS-H-paniculata_contig4713:2966..3120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4713 2967..3120 +
1622930403.0371628-CDS-H-paniculata_contig4713:3796..38911622930403.0371628-CDS-H-paniculata_contig4713:3796..3891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4713 3797..3891 +
1691481275.6479561-CDS-H-paniculata_contig4713:3796..38911691481275.6479561-CDS-H-paniculata_contig4713:3796..3891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4713 3797..3891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4713.11729.1

>prot_H-paniculata_contig4713.11729.1 ID=prot_H-paniculata_contig4713.11729.1|Name=mRNA_H-paniculata_contig4713.11729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MNRVWLGVHGSPPEDENRAEAEGAPCYGEIARYGGEQKEAAGEGPRNVEQ
TVKACVDAVCPVCADATCCCTQKEEVRGSSRLW
back to top

mRNA from alignment at H-paniculata_contig4713:2962..3891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4713.11729.1 ID=mRNA_H-paniculata_contig4713.11729.1|Name=mRNA_H-paniculata_contig4713.11729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=930bp|location=Sequence derived from alignment at H-paniculata_contig4713:2962..3891+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGATGAACAGAGTTTGGCTCGGCGTGCACGGGAGCCCGCCAGAAGAT
GAGAATCGAGCAGAGGCAGAGGGAGCTCCATGCTATGGAGAAATTGCACG
CTACGGTGGTGAACAGAAAGAAGCAGCAGGAGAAGGCCCACGCAACGTTG
AGCAGACAGGTCAGCAGCGACACTAGCAGCAGCAGCAGCAGCAGCAGTCG
TTTCCCTCAGTTGCTTTTGGCAACATTCTGTGACGAATTTTATTACTCCG
GTATTTCTTTTTCCATGTGCGAAACGATTTTTTTTTTTTTTATGCCGCCG
CCGCTGCTGCTGTTGCAGCCGCTACTACGTGTGTATGTATGATTCAGGCC
AGTAGCGCAACAGCTGTAGAGAACATCAGCAGCAGACTGCTGTATGCGCT
AGAAGCACCGAGGTGCTCATTTCATTTTGTACGTTGTACACTTGATTTTT
TTTTCAAAGTTGACTCGCTCGACATTTTTTTGCCCATTGCATGTGCCTTA
TGCCAATGCGTCATTTTGACACCGCCTCTGTAGCAGCAGCAGCAGCTGCT
GTTGCTGTTGCTGCTGGTACAGCGTTTGTGTGTATGATTCATGCCAGCAT
TGCAATAGATGTAAAGAACAGTAGCAACAGACTGCTGTATGCGCCAACAG
CACGCAGGTGCTCATTTTGTATATTGTACACTTGACATTTGAAAAAAAAC
ATGGAGTCGTTCCACATTCTGGACGATCACATGTGTACGGCTATCTTGAT
TTTGATGCCGCCGCCATCACCGCTTCTGCTGCTGCTGCCGCCGTCGCTCC
TGCTGTCTGCTTTCGTTAACCCGTTCTTTCCGTAGTCAAGGCTTGTGTGG
ATGCCGTGTGTCCTGTGTGCGCAGATGCTACCTGCTGTTGCACTCAGAAG
GAGGAAGTGAGAGGCAGCTCTCGCCTGTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4713:2962..3891+

>mRNA_H-paniculata_contig4713.11729.1 ID=mRNA_H-paniculata_contig4713.11729.1|Name=mRNA_H-paniculata_contig4713.11729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig4713:2962..3891+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAGAGTTTGGCTCGGCGTGCACGGGAGCCCGCCAGAAGATGAGAA
TCGAGCAGAGGCAGAGGGAGCTCCATGCTATGGAGAAATTGCACGCTACG
GTGGTGAACAGAAAGAAGCAGCAGGAGAAGGCCCACGCAACGTTGAGCAG
ACAGATGAACAGAGTTTGGCTCGGCGTGCACGGGAGCCCGCCAGAAGATG
AGAATCGAGCAGAGGCAGAGGGAGCTCCATGCTATGGAGAAATTGCACGC
TACGGTGGTGAACAGAAAGAAGCAGCAGGAGAAGGCCCACGCAACGTTGA
GCAGACAGTCAAGGCTTGTGTGGATGCCGTGTGTCCTGTGTGCGCAGATG
CTACCTGCTGTTGCACTCAGAAGGAGGAAGTGAGAGGCAGCTCTCGCCTG
TGGTCAAGGCTTGTGTGGATGCCGTGTGTCCTGTGTGCGCAGATGCTACC
TGCTGTTGCACTCAGAAGGAGGAAGTGAGAGGCAGCTCTCGCCTGTGG
back to top