prot_H-paniculata_contig4711.11726.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4711.11726.1
Unique Nameprot_H-paniculata_contig4711.11726.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length186
Homology
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BLAST of mRNA_H-paniculata_contig4711.11726.1 vs. uniprot
Match: D8LIH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIH0_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 2.200e-73
Identity = 110/178 (61.80%), Postives = 128/178 (71.91%), Query Frame = 0 
Query:   11 RTKALGLALAVLAICRGAFGQEMPGKGMTCWDKRELCDLNCVFSTTHEGTN-KLTACSTGCVEEQRACTDSDETVEYIACATGCAYTYDSDLIKCNQQTSAETKATYGTNQDACANLASGVMDDCMETCYGSDRFNGWTPDKEEG-----YVVEGMENEIWRRPFRAKETIYGRLRGE 182
            RT    LA+A L     A  QEMPGKGMTCWDKRELCDLNCV++TT E  +  LT CSTGCV  Q +CTDS ET+ Y+ CA  C  TYD  L KCNQ+ S +TK TYG N DACAN+ASG+MDDCME CYG DRFNGWTP KEEG       + G+++ +WRRPFR++  IYGRLRGE
Sbjct:   10 RTAVAVLAVAALLASDCASAQEMPGKGMTCWDKRELCDLNCVYATTAEDEDFNLTDCSTGCVTSQASCTDSAETLAYVECAKDCTLTYDGSLTKCNQKVSDQTKNTYGANLDACANIASGIMDDCMEDCYGEDRFNGWTPMKEEGKDANGIDLPGLDDGVWRRPFRSESVIYGRLRGE 187
[Close]
BLAST of mRNA_H-paniculata_contig4711.11726.1 vs. uniprot
Match: A0A835YM51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM51_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.770e-38
Identity = 75/173 (43.35%), Postives = 101/173 (58.38%), Query Frame = 0 
Query:   21 VLAICRGAFGQEMPGKGMTCWDKRELCDLNCVFSTTHEGT----------NKLTACSTGCVEEQRACTDSDETVEYIACATGCAYTYDSDLIKCNQQTSAETKATYGTNQDACANLASGVMDDCMETC-YGSD----RFNGWTPDKEEGYVVEGMENEIWRRPFRAKETIYGR 178
            +L +     GQEMPGKGM C DK+ELC LNC+  +   GT          + L +C   C ++   C D+ +  +YI CAT CA TYD  L  C Q  SA T  TYGT+QDACANLA+  MD+CM  C YG+D    R+  W+P++E G+ +  +    +RRPFR  + +YGR
Sbjct:   10 LLILVAVVVGQEMPGKGMGCSDKQELCSLNCLLPSA--GTMDLSGVTVTRDDLNSCLDVCDKDLTQCKDTPDNTKYIDCATVCAKTYDVALNACLQAASATTVGTYGTSQDACANLAAAPMDECMSACFYGADAAQDRYGAWSPEREAGHRIASLPRGQFRRPFRDPDVVYGR 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4711.11726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH0_ECTSI2.200e-7361.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YM51_9STRA6.770e-3843.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..185
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.802

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4711contigH-paniculata_contig4711:7805..14185 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4711.11726.1mRNA_H-paniculata_contig4711.11726.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4711 7575..15363 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4711.11726.1 ID=prot_H-paniculata_contig4711.11726.1|Name=mRNA_H-paniculata_contig4711.11726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MTMEPARLGARTKALGLALAVLAICRGAFGQEMPGKGMTCWDKRELCDLN
CVFSTTHEGTNKLTACSTGCVEEQRACTDSDETVEYIACATGCAYTYDSD
LIKCNQQTSAETKATYGTNQDACANLASGVMDDCMETCYGSDRFNGWTPD
KEEGYVVEGMENEIWRRPFRAKETIYGRLRGEQSA*
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