mRNA_H-paniculata_contig47106.11725.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME) HSP 1 Score: 60.8 bits (146), Expect = 1.090e-7 Identity = 43/171 (25.15%), Postives = 78/171 (45.61%), Query Frame = 1
Query: 16 VYCRRCGKRGHDLNAC-PQLVDEDTCLAEAEI----EIELEEALKVDLGEDEFITAHIASTSATGKEEGLSIWICDNGATKHMTHNSDFLFDYQQCSG-HVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKT 510
+ C C K GH + C + DED + E E E A ++ E E + + +WI D+GA++HMTH S+++ + Q HV L DG + + G G +++Q D + + L V ++P L+ +L S+G + + ++ +++ L
Sbjct: 227 IECFYCHKLGHYIKDCRKKRRDEDQGIRSKEKQKNNESNTEAAFSAEVIEKEILNLEVKD-----------VWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVGACMNKNYRVVFTNNSVKLFLNN 386
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM) HSP 1 Score: 55.1 bits (131), Expect = 1.080e-5 Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = 1
Query: 220 ICDNGATKHMTHNSDFLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRYSREGLRM-NLKTGRVL 522
I D+GA+ HM + + D ++ +G V +A+G+R+PIEGVG L L FD + + ++P + +LLS+ K D G + + + + +LKTGRV+
Sbjct: 308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5) HSP 1 Score: 53.5 bits (127), Expect = 3.380e-5 Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 1
Query: 220 ICDNGATKHMTHNSDFLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRYSREGLRM-NLKTGRVL 522
I D GA+ HM + + D ++ +G V +A+G+R+PIEGVG L L FD + + ++P + +LLS+ K D G + + + + +LKTGRV+
Sbjct: 264 IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8J5KVL0_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KVL0_ZINOF) HSP 1 Score: 53.1 bits (126), Expect = 4.640e-5 Identity = 31/113 (27.43%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 187 ATGKEEGLSIWICDNGATKHMTHNSD-FLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKTGRVL 522
++ + S+W D+G + HMT N D F+ + + L DG+R +G G + +Q + E ++ T V ++P LSH+LLS+G+ + + + ++ KT +V+
Sbjct: 307 SSANQPSKSVWYLDSGCSNHMTGNRDTFVKLDPNITSQIILGDGSRKSGKGKGDIAVQTKEGKEKLI---TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVI 416
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF) HSP 1 Score: 53.1 bits (126), Expect = 5.310e-5 Identity = 31/113 (27.43%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 187 ATGKEEGLSIWICDNGATKHMTHNSD-FLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKTGRVL 522
++ + S+W D+G + HMT N D F+ + + L DG+R +G G + +Q + E ++ T V ++P LSH+LLS+G+ + + + ++ KT +V+
Sbjct: 307 SSANQPSKSVWYLDSGCSNHMTGNRDTFVKLDPNITSQIILGDGSRKSGKGKGDIAVQTKEGKEKLI---TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVI 416
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF) HSP 1 Score: 53.1 bits (126), Expect = 5.540e-5 Identity = 31/113 (27.43%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 187 ATGKEEGLSIWICDNGATKHMTHNSD-FLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKTGRVL 522
++ + S+W D+G + HMT N D F+ + + L DG+R +G G + +Q + E ++ T V ++P LSH+LLS+G+ + + + ++ KT +V+
Sbjct: 277 SSANQPSKSVWYLDSGCSNHMTGNRDTFVKLDPNITSQIILGDGSRKSGKGKGDIAVQTKEGKEKLI---TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVI 386
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8J5H370_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5H370_ZINOF) HSP 1 Score: 52.8 bits (125), Expect = 7.170e-5 Identity = 31/113 (27.43%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 187 ATGKEEGLSIWICDNGATKHMTHNSD-FLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKTGRVL 522
++ + S+W D+G + HMT N D F+ + + L DG+R +G G + +Q + E ++ T V ++P LSH+LLS+G+ + + + ++ KT +V+
Sbjct: 309 SSANQPSKSVWYLDSGCSNHMTGNRDTFVKLDPNITSQIILEDGSRKSGKGKGDIAVQTKEGKEKLI---TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVI 418
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A4Y2QVG5_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2QVG5_ARAVE) HSP 1 Score: 52.8 bits (125), Expect = 7.480e-5 Identity = 39/149 (26.17%), Postives = 74/149 (49.66%), Query Frame = 1
Query: 13 NVYCRRCGKRGHDLNACPQLVDEDTCLAEAEIEIELEEALKVDLGEDEFITAHIASTS----ATGKEEGLSIWICDNGATKHMTHNSDFLFDYQ--QCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSL 441
++ C C K+GH + +CP+ + + + ++ L+ D +TA+++ + A EE W DNGA+KH+T+NS++ +++ + V A+G LP G G L + + E +L +V +P +S +L S+
Sbjct: 241 SITCNYCYKKGHWVKSCPKWIAD----GRPPKPNQNDKFLRKD-----GVTANMSLLALHEEAFSSEESCYDWFVDNGASKHITNNSNYFTNFEVFESPHGVTAANGKILPAIGKGTLKIVTKVKGEKQFKELKEVWLVPGISKNLFSV 380 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47106.11725.1 >prot_H-paniculata_contig47106.11725.1 ID=prot_H-paniculata_contig47106.11725.1|Name=mRNA_H-paniculata_contig47106.11725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp RDCPNVYCRRCGKRGHDLNACPQLVDEDTCLAEAEIEIELEEALKVDLGEback to top mRNA from alignment at H-paniculata_contig47106:732..1298+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47106.11725.1 ID=mRNA_H-paniculata_contig47106.11725.1|Name=mRNA_H-paniculata_contig47106.11725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=567bp|location=Sequence derived from alignment at H-paniculata_contig47106:732..1298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47106:732..1298+ >mRNA_H-paniculata_contig47106.11725.1 ID=mRNA_H-paniculata_contig47106.11725.1|Name=mRNA_H-paniculata_contig47106.11725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig47106:732..1298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |