mRNA_H-paniculata_contig47106.11725.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47106.11725.1
Unique NamemRNA_H-paniculata_contig47106.11725.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-7
Identity = 43/171 (25.15%), Postives = 78/171 (45.61%), Query Frame = 1
Query:   16 VYCRRCGKRGHDLNAC-PQLVDEDTCLAEAEI----EIELEEALKVDLGEDEFITAHIASTSATGKEEGLSIWICDNGATKHMTHNSDFLFDYQQCSG-HVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKT 510
            + C  C K GH +  C  +  DED  +   E     E   E A   ++ E E +   +             +WI D+GA++HMTH S+++ + Q     HV L DG +  + G G +++Q   D + +   L  V ++P L+ +L S+G   +  +   ++   +++ L  
Sbjct:  227 IECFYCHKLGHYIKDCRKKRRDEDQGIRSKEKQKNNESNTEAAFSAEVIEKEILNLEVKD-----------VWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVGACMNKNYRVVFTNNSVKLFLNN 386          
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 55.1 bits (131), Expect = 1.080e-5
Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  220 ICDNGATKHMTHNSDFLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRYSREGLRM-NLKTGRVL 522
            I D+GA+ HM  +   + D ++ +G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +  +  + +   +LKTGRV+
Sbjct:  308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401          
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5)

HSP 1 Score: 53.5 bits (127), Expect = 3.380e-5
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  220 ICDNGATKHMTHNSDFLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRYSREGLRM-NLKTGRVL 522
            I D GA+ HM  +   + D ++ +G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +  +  + +   +LKTGRV+
Sbjct:  264 IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357          
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8J5KVL0_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KVL0_ZINOF)

HSP 1 Score: 53.1 bits (126), Expect = 4.640e-5
Identity = 31/113 (27.43%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  187 ATGKEEGLSIWICDNGATKHMTHNSD-FLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKTGRVL 522
            ++  +   S+W  D+G + HMT N D F+      +  + L DG+R   +G G + +Q +   E ++   T V ++P LSH+LLS+G+  +    + +     ++  KT +V+
Sbjct:  307 SSANQPSKSVWYLDSGCSNHMTGNRDTFVKLDPNITSQIILGDGSRKSGKGKGDIAVQTKEGKEKLI---TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVI 416          
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF)

HSP 1 Score: 53.1 bits (126), Expect = 5.310e-5
Identity = 31/113 (27.43%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  187 ATGKEEGLSIWICDNGATKHMTHNSD-FLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKTGRVL 522
            ++  +   S+W  D+G + HMT N D F+      +  + L DG+R   +G G + +Q +   E ++   T V ++P LSH+LLS+G+  +    + +     ++  KT +V+
Sbjct:  307 SSANQPSKSVWYLDSGCSNHMTGNRDTFVKLDPNITSQIILGDGSRKSGKGKGDIAVQTKEGKEKLI---TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVI 416          
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF)

HSP 1 Score: 53.1 bits (126), Expect = 5.540e-5
Identity = 31/113 (27.43%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  187 ATGKEEGLSIWICDNGATKHMTHNSD-FLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKTGRVL 522
            ++  +   S+W  D+G + HMT N D F+      +  + L DG+R   +G G + +Q +   E ++   T V ++P LSH+LLS+G+  +    + +     ++  KT +V+
Sbjct:  277 SSANQPSKSVWYLDSGCSNHMTGNRDTFVKLDPNITSQIILGDGSRKSGKGKGDIAVQTKEGKEKLI---TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVI 386          
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A8J5H370_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5H370_ZINOF)

HSP 1 Score: 52.8 bits (125), Expect = 7.170e-5
Identity = 31/113 (27.43%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  187 ATGKEEGLSIWICDNGATKHMTHNSD-FLFDYQQCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRYSREGLRMNLKTGRVL 522
            ++  +   S+W  D+G + HMT N D F+      +  + L DG+R   +G G + +Q +   E ++   T V ++P LSH+LLS+G+  +    + +     ++  KT +V+
Sbjct:  309 SSANQPSKSVWYLDSGCSNHMTGNRDTFVKLDPNITSQIILEDGSRKSGKGKGDIAVQTKEGKEKLI---TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVI 418          
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Match: A0A4Y2QVG5_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2QVG5_ARAVE)

HSP 1 Score: 52.8 bits (125), Expect = 7.480e-5
Identity = 39/149 (26.17%), Postives = 74/149 (49.66%), Query Frame = 1
Query:   13 NVYCRRCGKRGHDLNACPQLVDEDTCLAEAEIEIELEEALKVDLGEDEFITAHIASTS----ATGKEEGLSIWICDNGATKHMTHNSDFLFDYQ--QCSGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSL 441
            ++ C  C K+GH + +CP+ + +           + ++ L+ D      +TA+++  +    A   EE    W  DNGA+KH+T+NS++  +++  +    V  A+G  LP  G G L +  +   E    +L +V  +P +S +L S+
Sbjct:  241 SITCNYCYKKGHWVKSCPKWIAD----GRPPKPNQNDKFLRKD-----GVTANMSLLALHEEAFSSEESCYDWFVDNGASKHITNNSNYFTNFEVFESPHGVTAANGKILPAIGKGTLKIVTKVKGEKQFKELKEVWLVPGISKNLFSV 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47106.11725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME1.090e-725.15Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A8D9D973_BRACM1.080e-533.98(field mustard) hypothetical protein (Fragment) n=... [more]
UPI00142D92C53.380e-533.98uncharacterized protein LOC117131646 n=1 Tax=Brass... [more]
A0A8J5KVL0_ZINOF4.640e-527.43Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A8J5GP83_ZINOF5.310e-527.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5F3N7_ZINOF5.540e-527.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5H370_ZINOF7.170e-527.43Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A4Y2QVG5_ARAVE7.480e-526.17Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47106contigH-paniculata_contig47106:732..1298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.0
Seed ortholog evalue9.5e-12
Seed eggNOG ortholog3712.Bo3g019830.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930402.320071-CDS-H-paniculata_contig47106:731..9441622930402.320071-CDS-H-paniculata_contig47106:731..944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47106 732..944 +
1691481275.3196611-CDS-H-paniculata_contig47106:731..9441691481275.3196611-CDS-H-paniculata_contig47106:731..944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47106 732..944 +
1622930402.3367043-CDS-H-paniculata_contig47106:989..12981622930402.3367043-CDS-H-paniculata_contig47106:989..1298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47106 990..1298 +
1691481275.3307443-CDS-H-paniculata_contig47106:989..12981691481275.3307443-CDS-H-paniculata_contig47106:989..1298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47106 990..1298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47106.11725.1prot_H-paniculata_contig47106.11725.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47106 732..1298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47106.11725.1

>prot_H-paniculata_contig47106.11725.1 ID=prot_H-paniculata_contig47106.11725.1|Name=mRNA_H-paniculata_contig47106.11725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
RDCPNVYCRRCGKRGHDLNACPQLVDEDTCLAEAEIEIELEEALKVDLGE
DEFITAHIASTSATGKEEGLSIWICDNGATKHMTHNSDFLFDYQQCSGHV
RLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKF
ADFGHEYRYSREGLRMNLKTGRVL
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mRNA from alignment at H-paniculata_contig47106:732..1298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47106.11725.1 ID=mRNA_H-paniculata_contig47106.11725.1|Name=mRNA_H-paniculata_contig47106.11725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=567bp|location=Sequence derived from alignment at H-paniculata_contig47106:732..1298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGACTGCCCCAACGTGTACTGTCGGCGATGTGGTAAGCGTGGTCACGA CTTGAACGCATGCCCCCAGCTTGTCGATGAAGATACTTGTTTGGCTGAAG CTGAAATTGAGATTGAACTTGAAGAAGCGCTCAAGGTTGATCTGGGCGAA GATGAGTTCATCACGGCACACATCGCGTCGACTTCCGCCACAGGCAAGGA AGAGGGTTTGTCTGTGGACTCTGAGGGGATAGAATATCGTGAGGTGGAGG GGATGGAGATTTGGATATGTGATAATGGTGCAACGAAACACATGACCCAT AATTCAGATTTTCTTTTTGATTATCAGCAATGTAGTGGGCATGTACGCCT CGCAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTC AATTTCGATTTGACTCCGAGGTTGTATTGATGAAGTTAACTCAGGTTGCG TTCATACCACTTCTCAGTCATCACCTTCTATCTCTAGGGAAATTCGCGGA CTTTGGTCATGAATATAGGTATTCGCGCGAAGGGCTCAGAATGAACCTTA AAACAGGGAGAGTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig47106:732..1298+

>mRNA_H-paniculata_contig47106.11725.1 ID=mRNA_H-paniculata_contig47106.11725.1|Name=mRNA_H-paniculata_contig47106.11725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig47106:732..1298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGACTGCCCCAACGTGTACTGTCGGCGATGTGGTAAGCGTGGTCACGA
CTTGAACGCATGCCCCCAGCTTGTCGATGAAGATACTTGTTTGGCTGAAG
CTGAAATTGAGATTGAACTTGAAGAAGCGCTCAAGGTTGATCTGGGCGAA
GATGAGTTCATCACGGCACACATCGCGTCGACTTCCGCCACAGGCAAGGA
AGAGGGTTTGTCTCGGGACTGCCCCAACGTGTACTGTCGGCGATGTGGTA
AGCGTGGTCACGACTTGAACGCATGCCCCCAGCTTGTCGATGAAGATACT
TGTTTGGCTGAAGCTGAAATTGAGATTGAACTTGAAGAAGCGCTCAAGGT
TGATCTGGGCGAAGATGAGTTCATCACGGCACACATCGCGTCGACTTCCG
CCACAGGCAAGGAAGAGGGTTTGTCTATTTGGATATGTGATAATGGTGCA
ACGAAACACATGACCCATAATTCAGATTTTCTTTTTGATTATCAGCAATG
TAGTGGGCATGTACGCCTCGCAGATGGTAATCGTCTCCCGATCGAAGGAG
TTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTATTGATG
AAGTTAACTCAGGTTGCGTTCATACCACTTCTCAGTCATCACCTTCTATC
TCTAGGGAAATTCGCGGACTTTGGTCATGAATATAGGTATTCGCGCGAAG
GGCTCAGAATGAACCTTAAAACAGGGAGAGTTCTGATTTGGATATGTGAT
AATGGTGCAACGAAACACATGACCCATAATTCAGATTTTCTTTTTGATTA
TCAGCAATGTAGTGGGCATGTACGCCTCGCAGATGGTAATCGTCTCCCGA
TCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTT
GTATTGATGAAGTTAACTCAGGTTGCGTTCATACCACTTCTCAGTCATCA
CCTTCTATCTCTAGGGAAATTCGCGGACTTTGGTCATGAATATAGGTATT
CGCGCGAAGGGCTCAGAATGAACCTTAAAACAGGGAGAGTTCTG
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