mRNA_H-paniculata_contig4708.11718.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4708.11718.1
Unique NamemRNA_H-paniculata_contig4708.11718.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4708.11718.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.810e-18
Identity = 157/490 (32.04%), Postives = 226/490 (46.12%), Query Frame = 1 
Query:   16 EDVWVPAGTHRILFCADSANFNLNYLRVXXXXXXXXXXXXXXXXXXXXXTGPKDDGSRYTWIYVSLGCFIGTLCVARLLFIIYAKEESRRLKRESIGDYLDGNVDIEDNYDMDKTPPPVDDDSSAITANVHVHALARHTADSTNRAWTLSNGGRGGGGSANGSSKTWALSEVTSNAPAVYPVYPAHASVQVETLPGGGDMLGDGKMPTDGRGTRSGSGGGGVEREAEPSRKSR--AKGRSKSPLLSRRPGMNNNNVDVNTGGIAPSASTDMWSEPKESASTRRPDSFSETQPVVSPINSVIAGLSGSEGLLLSRP----TSRAAAGLELSSNRSTWRQATT-SPLQTSRVFSSL-PSVP----SKAPHFNSQGSRL---KRNES--PFEDALLRAVEKRWTDSRDSRGSGDINELSRSMSIIGQQSGEMASGIGLARLFASSDMPSSTVRK--TAMLAAGKCWTCQCNFENSAGQNSCLGCGRVSPVGRP 1428
            E+V+VP GTHR+LFCAD   FN+N+LRV      XXXXXXXXXXXX     P DDG    WIY+ +   +  L ++RL  IIY KE S+  K ++ G +       +  +  + TPP    DS A+  +     L+RH   S   A      G G   SA           V    P V   +  + ++    L        D   PT+ + T+  +   G +R + PSR +   A   +  PL + R           TG  A S+ T +              S S   PVVSP+ S I G+          P    T RA +G EL  + S W +A+T SP+ + +  S+  PS P    + A   +S G +L   +R+E+   FEDAL+RA++ +W   R   G              G  SG  +  +      A++   S+++ +  ++ML A K WTC C F+NS GQ +CLGCGRV+P+ RP
Sbjct:  610 EEVYVPEGTHRVLFCADDGIFNMNFLRVWTPTPTXXXXXXXXXXXXAAPVVPSDDGVDTKWIYIGVAGAVVFLALSRLGCIIYGKERSQPPKPDNNGGHAARGGGGK-GFVYEGTPPS---DSGAVGGDGAF--LSRHGRPSDGEA------GNGRHSSA-----------VEPGDPVVVHQH-NYRNLFSRGLSSSASFHAD--TPTEIK-TKPNAAVAGSQRASIPSRDASPAAFATAAPPLGAFRSA---------TGRSAKSSMTSVGR------------SVSPPLPVVSPVESAI-GVGARVDHSADGPGDFKTPRAKSGQELQRSGSLWDRASTLSPILSKQGTSTATPSTPKGDSAAALGKDSGGEQLPERRRSEARDQFEDALIRALDNKWESGRRIHGG------------YGSDSGRASPPLPPV---ATTPSRSNSINEGPSSMLMAVKTWTCVCTFKNSVGQTACLGCGRVAPLNRP 1035
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4708.11718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV09_9PHAE3.810e-1832.04GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4708contigH-paniculata_contig4708:4003..6420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue3e-09
Seed eggNOG ortholog2880.D8LQ34
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Glycosyl hydrolases family 16
EggNOG OGs2S1W9@2759,COG2273@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1679
Cds size1365
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4708.11718.1prot_H-paniculata_contig4708.11718.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4708 4173..6276 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930401.0049617-UTR-H-paniculata_contig4708:4002..41721622930401.0049617-UTR-H-paniculata_contig4708:4002..4172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4708 4003..4172 -
1691481274.757098-UTR-H-paniculata_contig4708:4002..41721691481274.757098-UTR-H-paniculata_contig4708:4002..4172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4708 4003..4172 -
1622930401.2028124-UTR-H-paniculata_contig4708:6276..64201622930401.2028124-UTR-H-paniculata_contig4708:6276..6420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4708 6277..6420 -
1691481274.7972572-UTR-H-paniculata_contig4708:6276..64201691481274.7972572-UTR-H-paniculata_contig4708:6276..6420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4708 6277..6420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930401.0164812-CDS-H-paniculata_contig4708:4172..51021622930401.0164812-CDS-H-paniculata_contig4708:4172..5102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4708 4173..5102 -
1691481274.767304-CDS-H-paniculata_contig4708:4172..51021691481274.767304-CDS-H-paniculata_contig4708:4172..5102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4708 4173..5102 -
1622930401.1699731-CDS-H-paniculata_contig4708:5114..54831622930401.1699731-CDS-H-paniculata_contig4708:5114..5483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4708 5115..5483 -
1691481274.7765336-CDS-H-paniculata_contig4708:5114..54831691481274.7765336-CDS-H-paniculata_contig4708:5114..5483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4708 5115..5483 -
1622930401.1892192-CDS-H-paniculata_contig4708:6210..62761622930401.1892192-CDS-H-paniculata_contig4708:6210..6276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4708 6211..6276 -
1691481274.7853878-CDS-H-paniculata_contig4708:6210..62761691481274.7853878-CDS-H-paniculata_contig4708:6210..6276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4708 6211..6276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4708.11718.1

>prot_H-paniculata_contig4708.11718.1 ID=prot_H-paniculata_contig4708.11718.1|Name=mRNA_H-paniculata_contig4708.11718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=455bp
MPTRAPTGPKDDGSRYTWIYVSLGCFIGTLCVARLLFIIYAKEESRRLKR
ESIGDYLDGNVDIEDNYDMDKTPPPVDDDSSAITANVHVHALARHTADST
NRAWTLSNGGRGGGGSANGSSKTWALSEVTSNAPAVYPVYPAHASVQVET
LPGGGDMLGDGKMPTDGRGTRSGSGGGGVEREAEPSRKSRAKGRSKSPLL
SRRPGMNNNNVDVNTGGIAPSASTDMWSEPKESASTRRPDSFSETQPVVS
PINSVIAGLSGSEGLLLSRPTSRAAAGLELSSNRSTWRQATTSPLQTSRV
FSSLPSVPSKAPHFNSQGSRLKRNESPFEDALLRAVEKRWTDSRDSRGSG
DINELSRSMSIIGQQSGEMASGIGLARLFASSDMPSSTVRKTAMLAAGKC
WTCQCNFENSAGQNSCLGCGRVSPVGRPRSQGSAIRQSSWVPPGGEVGGD
TDVR*
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mRNA from alignment at H-paniculata_contig4708:4003..6420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4708.11718.1 ID=mRNA_H-paniculata_contig4708.11718.1|Name=mRNA_H-paniculata_contig4708.11718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2418bp|location=Sequence derived from alignment at H-paniculata_contig4708:4003..6420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATATGAAGGGGCCGAGGATGTTTGGGTCCCCGCGGGCACGCACCGGAT
TCTATTCTGCGCGGATTCGGCGAATTTTAACCTGAACTATTTGAGAGTTT
ATATCCCGGTGCCTACTCCGGCGCCCACGATTGCACCCACGAACATGCCG
ACTCGCGCTCCGACTGGGCCTAAGGACGATGGAAGCCGCTATACATGGAT
TTACGTATCGGTGAGTTTTGAAAGTTGTGACATGGGTAGGGCTGTGTATC
GGTAATTCAGGGTCGATATTCGAATATTGGTCCGTGAAGCGAGCCGGCTG
CGCGAAGCGCCAGGCGAGCGAGTTAGCTTAGCGGGAGCCAAACGTCTTCA
CTTCTCCCGGCGGCTGATGATCGTGCGTCTTCGGGAGCATAAGAAAAGTC
GTTTCAGTTTCTATCTATGATCAAACTCCAGCTACAAATTCCATTGGATA
ATGACTAGCAGATGTGTAGATTATATTGGATAGTGACTAGCATGCCAGGA
AGCTCTTTATGTAAACAAAGCACAGCAGTGCGTAGTGCGTTCGTCTTCTT
TTCGCACGTTTTTCTGTTATCATAAAGGTGAACATGCTTGGCTGAGGTTC
ATGTTGCCACTAAATTAAGGACTGCACACGGCATGATTGTTTCCCACTGG
ATGTTGATGATATCACAGTTTCCTTTGGCGATAGTGTTTTGGGTAAAAGA
GAATATGAAGTCGATCACATGGCCGGGAAAATATGTTCTTTCTGCTATAT
GGGTTTCTTGCAGACCGCCTATAAATTGCTTCACCTTGCTTCCCCGTGTC
ATGACTACTGTAGCTTGTGCCTGCCGAATATAATGTGGATACACGTACTA
ACCCGATACTGTACATGCTCTTTCGTCTTCCGGGAATACACGATTACATA
TATCCGTATTTTGCTGCCTTTGCCATTGTGGACGCAGTTGGGCTGCTTTA
TTGGGACACTGTGCGTCGCCCGGTTGTTATTCATTATCTACGCCAAAGAA
GAGTCCAGGAGGCTAAAACGTGAGAGCATTGGTGACTATTTGGACGGTAA
TGTTGACATCGAAGATAACTATGATATGGACAAGACGCCTCCGCCTGTCG
ATGACGATTCGAGTGCAATCACTGCTAATGTTCATGTGCATGCTTTGGCA
AGACATACTGCCGACAGCACCAATAGAGCCTGGACGTTATCGAACGGTGG
GCGCGGTGGCGGCGGCAGCGCTAATGGCAGCAGCAAAACTTGGGCCTTGT
CTGAGGTTACCAGCAACGCGCCCGCAGTGTACCCCGTGTACCCAGCACAC
GCGAGCGCTTCCAAGCAGGTCCAAGTCGAAACCCTGCCTGGTGGCGGCGA
CATGCTTGGTGACGGAAAAATGCCCACGGATGGACGCGGCACGCGCAGCG
GTAGTGGTGGCGGCGGTGTAGAACGTGAGGCGGAGCCCTCTCGAAAGAGT
CGAGCGAAGGGTCGCAGTAAGTCGCCTTTGCTCTCTAGAAGACCCGGCAT
GAACAACAACAATGTCGATGTTAATACTGGAGGCATCGCCCCATCGGCGT
CGACGGATATGTGGTCCGAGCCTAAGGAGTCTGCCTCGACACGCAGACCG
GACAGCTTCTCCGAGACACAGCCCGTCGTTAGCCCTATCAATAGCGTCAT
TGCGGGTTTGTCGGGATCAGAAGGGTTGCTTCTATCGCGGCCCACGTCCA
GGGCGGCAGCCGGGCTTGAGCTGTCTTCTAACAGATCGACGTGGCGTCAG
GCAACGACATCACCCCTCCAAACTTCTAGAGTATTTAGTTCGCTCCCCTC
TGTCCCCTCGAAAGCGCCCCATTTTAATTCTCAAGGATCAAGACTTAAGA
GAAATGAAAGCCCGTTTGAAGATGCACTGCTCCGAGCAGTGGAAAAGCGG
TGGACGGATTCCAGGGATTCCCGGGGATCTGGCGATATTAATGAACTGAG
CAGGAGTATGTCGATTATAGGGCAGCAATCCGGTGAGATGGCGTCGGGAA
TCGGGTTGGCGCGATTGTTCGCGTCATCGGATATGCCGTCGTCGACTGTT
AGGAAGACGGCGATGCTTGCGGCCGGTAAATGCTGGACCTGCCAGTGCAA
CTTCGAGAACAGCGCCGGGCAGAACTCGTGTCTGGGCTGCGGGCGGGTGT
CGCCTGTGGGACGGCCTCGATCTCAGGGGTCAGCGATTCGTCAGAGCTCC
TGGGTCCCTCCGGGAGGTGAAGTGGGAGGCGACACTGACGTACGTTAGGT
TATGTACATGAATAGGATATGGATGAATGGGCATGTTCTCAGAGATTAGT
TATCTTTGTTTCGGCTGGGGTGATAGCATGGTAATATGGTAATATAGGCA
GCGCGCGAAAAATGTGTGCGTGTGCGTACTTCTTGTAGTTGATGTAATTT
TACTCTCTCCTCCCCCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4708:4003..6420-

>mRNA_H-paniculata_contig4708.11718.1 ID=mRNA_H-paniculata_contig4708.11718.1|Name=mRNA_H-paniculata_contig4708.11718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2730bp|location=Sequence derived from alignment at H-paniculata_contig4708:4003..6420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGACTCGCGCTCCGACTGGGCCTAAGGACGATGGAAGCCGCTATAC
ATGGATTTACGTATCGATGCCGACTCGCGCTCCGACTGGGCCTAAGGACG
ATGGAAGCCGCTATACATGGATTTACGTATCGTTGGGCTGCTTTATTGGG
ACACTGTGCGTCGCCCGGTTGTTATTCATTATCTACGCCAAAGAAGAGTC
CAGGAGGCTAAAACGTGAGAGCATTGGTGACTATTTGGACGGTAATGTTG
ACATCGAAGATAACTATGATATGGACAAGACGCCTCCGCCTGTCGATGAC
GATTCGAGTGCAATCACTGCTAATGTTCATGTGCATGCTTTGGCAAGACA
TACTGCCGACAGCACCAATAGAGCCTGGACGTTATCGAACGGTGGGCGCG
GTGGCGGCGGCAGCGCTAATGGCAGCAGCAAAACTTGGGCCTTGTCTGAG
GTTACCAGCAACGCGCCCGCAGTGTACCCCGTGTACCCAGCACACGCGAG
CTTGGGCTGCTTTATTGGGACACTGTGCGTCGCCCGGTTGTTATTCATTA
TCTACGCCAAAGAAGAGTCCAGGAGGCTAAAACGTGAGAGCATTGGTGAC
TATTTGGACGGTAATGTTGACATCGAAGATAACTATGATATGGACAAGAC
GCCTCCGCCTGTCGATGACGATTCGAGTGCAATCACTGCTAATGTTCATG
TGCATGCTTTGGCAAGACATACTGCCGACAGCACCAATAGAGCCTGGACG
TTATCGAACGGTGGGCGCGGTGGCGGCGGCAGCGCTAATGGCAGCAGCAA
AACTTGGGCCTTGTCTGAGGTTACCAGCAACGCGCCCGCAGTGTACCCCG
TGTACCCAGCACACGCGAGCGTCCAAGTCGAAACCCTGCCTGGTGGCGGC
GACATGCTTGGTGACGGAAAAATGCCCACGGATGGACGCGGCACGCGCAG
CGGTAGTGGTGGCGGCGGTGTAGAACGTGAGGCGGAGCCCTCTCGAAAGA
GTCGAGCGAAGGGTCGCAGTAAGTCGCCTTTGCTCTCTAGAAGACCCGGC
ATGAACAACAACAATGTCGATGTTAATACTGGAGGCATCGCCCCATCGGC
GTCGACGGATATGTGGTCCGAGCCTAAGGAGTCTGCCTCGACACGCAGAC
CGGACAGCTTCTCCGAGACACAGCCCGTCGTTAGCCCTATCAATAGCGTC
ATTGCGGGTTTGTCGGGATCAGAAGGGTTGCTTCTATCGCGGCCCACGTC
CAGGGCGGCAGCCGGGCTTGAGCTGTCTTCTAACAGATCGACGTGGCGTC
AGGCAACGACATCACCCCTCCAAACTTCTAGAGTATTTAGTTCGCTCCCC
TCTGTCCCCTCGAAAGCGCCCCATTTTAATTCTCAAGGATCAAGACTTAA
GAGAAATGAAAGCCCGTTTGAAGATGCACTGCTCCGAGCAGTGGAAAAGC
GGTGGACGGATTCCAGGGATTCCCGGGGATCTGGCGATATTAATGAACTG
AGCAGGAGTATGTCGATTATAGGGCAGCAATCCGGTGAGATGGCGTCGGG
AATCGGGTTGGCGCGATTGTTCGCGTCATCGGATATGCCGTCGTCGACTG
TTAGGAAGACGGCGATGCTTGCGGCCGGTAAATGCTGGACCTGCCAGTGC
AACTTCGAGAACAGCGCCGGGCAGAACTCGTGTCTGGGCTGCGGGCGGGT
GTCGCCTGTGGGACGGCCTCGATCTCAGGGGTCAGCGATTCGTCAGAGCT
CCTGGGTCCCTCCGGGAGGTGAAGTGGGAGGCGACACTGACGTACGTTAG
GTCCAAGTCGAAACCCTGCCTGGTGGCGGCGACATGCTTGGTGACGGAAA
AATGCCCACGGATGGACGCGGCACGCGCAGCGGTAGTGGTGGCGGCGGTG
TAGAACGTGAGGCGGAGCCCTCTCGAAAGAGTCGAGCGAAGGGTCGCAGT
AAGTCGCCTTTGCTCTCTAGAAGACCCGGCATGAACAACAACAATGTCGA
TGTTAATACTGGAGGCATCGCCCCATCGGCGTCGACGGATATGTGGTCCG
AGCCTAAGGAGTCTGCCTCGACACGCAGACCGGACAGCTTCTCCGAGACA
CAGCCCGTCGTTAGCCCTATCAATAGCGTCATTGCGGGTTTGTCGGGATC
AGAAGGGTTGCTTCTATCGCGGCCCACGTCCAGGGCGGCAGCCGGGCTTG
AGCTGTCTTCTAACAGATCGACGTGGCGTCAGGCAACGACATCACCCCTC
CAAACTTCTAGAGTATTTAGTTCGCTCCCCTCTGTCCCCTCGAAAGCGCC
CCATTTTAATTCTCAAGGATCAAGACTTAAGAGAAATGAAAGCCCGTTTG
AAGATGCACTGCTCCGAGCAGTGGAAAAGCGGTGGACGGATTCCAGGGAT
TCCCGGGGATCTGGCGATATTAATGAACTGAGCAGGAGTATGTCGATTAT
AGGGCAGCAATCCGGTGAGATGGCGTCGGGAATCGGGTTGGCGCGATTGT
TCGCGTCATCGGATATGCCGTCGTCGACTGTTAGGAAGACGGCGATGCTT
GCGGCCGGTAAATGCTGGACCTGCCAGTGCAACTTCGAGAACAGCGCCGG
GCAGAACTCGTGTCTGGGCTGCGGGCGGGTGTCGCCTGTGGGACGGCCTC
GATCTCAGGGGTCAGCGATTCGTCAGAGCTCCTGGGTCCCTCCGGGAGGT
GAAGTGGGAGGCGACACTGACGTACGTTAG
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