mRNA_H-paniculata_contig47076.11717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47076.11717.1
Unique NamemRNA_H-paniculata_contig47076.11717.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47076.11717.1 vs. uniprot
Match: A0A6H5KJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 8.380e-18
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:    1 NYISLSEKKPKVQRMCDILSQSQFNLRYKPGKRNQLADALSRLPVPSTEDDESACRILDPHEVTVCFVGRSGITPTSLRSIPNV---QPLQKPLVRETRSLTTDEQLQFQWSDIQDSLS 348
            ++IS+ EKKP+VQ MCD L+   F L Y+ GK NQ+ADALSRLP P T DD   C+ ++  ++ VCF+G S      L S  +     P +   +R     TT+E    +W+ +Q  L+
Sbjct:  305 SFISMGEKKPRVQHMCDFLTAYSFTLSYRKGKDNQVADALSRLPQPPTADDFDKCKSIEDGDLEVCFIGSSRRATRKLGSDSDAFIGGPTENRYMRPVTLCTTEEVEAREWAGVQSELT 423
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BLAST of mRNA_H-paniculata_contig47076.11717.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.130e-17
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:    1 NYISLSEKKPKVQRMCDILSQSQFNLRYKPGKRNQLADALSRLPVPSTEDDESACRILDPHEVTVCFVGRSGITPTSLRSIPNV---QPLQKPLVRETRSLTTDEQLQFQWSDIQDSLS 348
            ++IS+ EKKP+VQRMCD LS   F L Y+ GK NQ+ADALSRLP P T  D   C++++  ++ V F+G        L S  N     P +   +R     TT+E    +W+ +Q  L+
Sbjct:  454 SFISMGEKKPRVQRMCDFLSAYSFTLSYRKGKENQVADALSRLPQPPTAADFDKCKLIEDGDLEVYFLGSRRRATRKLGSDSNAFISDPTENRFLRPVTLCTTEEVKAREWAGVQSELT 572
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BLAST of mRNA_H-paniculata_contig47076.11717.1 vs. uniprot
Match: A0A6H5KPU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPU9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 7.150e-12
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:    1 NYISLSEKKPKVQRMCDILSQSQFNLRYKPGKRNQLADALSRLPVPSTEDDESAC-RILDPHEVTVCFVGRSGIT--PTSLRSIPNVQPLQKPLVRETRSLTTDEQLQFQW 324
            +Y+SLSEKK +V RMCD LS  QF+LRYK G  NQ AD L RLP  +T+  ES   R+++  ++ + FVG +     P  L+   +        +     LTTDE  + QW
Sbjct:  161 SYLSLSEKKLRVHRMCDFLSSYQFSLRYKKGNDNQAADMLFRLPQSATDKYESGPNRLIEEGDLEMYFVGAANCLSPPLGLQLQTSSHENSGAFMEPVDPLTTDEVAKNQW 271
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BLAST of mRNA_H-paniculata_contig47076.11717.1 vs. uniprot
Match: UPI0018E26D40 (LOW QUALITY PROTEIN: uncharacterized protein K02A2.6-like n=5 Tax=Cyprinodon tularosa TaxID=77115 RepID=UPI0018E26D40)

HSP 1 Score: 52.4 bits (124), Expect = 2.860e-5
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   28 PKVQRMCDILSQSQFNLRYKPGKRNQLADALSRLPVPSTEDDESACRIL 174
            P+VQR   +L   ++ + YKPGK +  ADALSRLP+P TE++E   ++L
Sbjct:  830 PRVQRWATLLRAYEYKIIYKPGKEHANADALSRLPLPHTEEEEETAQVL 878
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BLAST of mRNA_H-paniculata_contig47076.11717.1 vs. uniprot
Match: UPI001C043064 (uncharacterized protein K02A2.6-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C043064)

HSP 1 Score: 51.2 bits (121), Expect = 7.230e-5
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   28 PKVQRMCDILSQSQFNLRYKPGKRNQLADALSRLPVPSTEDDESACRIL 174
            P+VQR   +L   ++ + YKPGK +  ADALSRLP+P TE+++ A  +L
Sbjct:  831 PRVQRWAVLLRAYEYKIMYKPGKEHANADALSRLPLPHTEEEDDADHVL 879
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BLAST of mRNA_H-paniculata_contig47076.11717.1 vs. uniprot
Match: A0A669DI79_ORENI (Ribonuclease H n=18 Tax=Ovalentaria TaxID=1489908 RepID=A0A669DI79_ORENI)

HSP 1 Score: 51.2 bits (121), Expect = 7.240e-5
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   28 PKVQRMCDILSQSQFNLRYKPGKRNQLADALSRLPVPSTEDDE 156
            P+VQR    LS  ++N+RYKPGK ++ ADALSRLPVP +  ++
Sbjct:  858 PRVQRWAVTLSAYEYNIRYKPGKHHENADALSRLPVPDSAPEQ 900
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BLAST of mRNA_H-paniculata_contig47076.11717.1 vs. uniprot
Match: A0A147BJB1_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A147BJB1_IXORI)

HSP 1 Score: 50.8 bits (120), Expect = 9.580e-5
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   28 PKVQRMCDILSQSQFNLRYKPGKRNQLADALSRLPVPSTEDDES 159
            P++ R C  L+   ++L+Y+PG R+Q ADALSRLP+P TED+ +
Sbjct:  397 PRMTRWCVKLAAYHYDLKYRPGNRHQNADALSRLPLPHTEDERN 440
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BLAST of mRNA_H-paniculata_contig47076.11717.1 vs. uniprot
Match: A0A6P8F463_CLUHA (Ribonuclease H n=2 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8F463_CLUHA)

HSP 1 Score: 50.8 bits (120), Expect = 9.860e-5
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   28 PKVQRMCDILSQSQFNLRYKPGKRNQLADALSRLPVPSTEDDESACRIL 174
            P+VQR   +L   ++N+ YKPGK +  ADALSRLP+P TE+++   ++L
Sbjct:  836 PRVQRWAILLRAYEYNMVYKPGKDHANADALSRLPLPHTEEEDDTGQVL 884
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47076.11717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KJH5_9PHAE8.380e-1839.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L269_9PHAE2.130e-1739.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPU9_9PHAE7.150e-1240.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0018E26D402.860e-546.94LOW QUALITY PROTEIN: uncharacterized protein K02A2... [more]
UPI001C0430647.230e-546.94uncharacterized protein K02A2.6-like n=1 Tax=Melan... [more]
A0A669DI79_ORENI7.240e-553.49Ribonuclease H n=18 Tax=Ovalentaria TaxID=1489908 ... [more]
A0A147BJB1_IXORI9.580e-550.00RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]
A0A6P8F463_CLUHA9.860e-546.94Ribonuclease H n=2 Tax=Clupea harengus TaxID=7950 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47076contigH-paniculata_contig47076:189..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size382
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930400.9622197-CDS-H-paniculata_contig47076:188..5691622930400.9622197-CDS-H-paniculata_contig47076:188..569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47076 189..569 +
1691481274.7482288-CDS-H-paniculata_contig47076:188..5691691481274.7482288-CDS-H-paniculata_contig47076:188..569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47076 189..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47076.11717.1prot_H-paniculata_contig47076.11717.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47076 189..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47076.11717.1

>prot_H-paniculata_contig47076.11717.1 ID=prot_H-paniculata_contig47076.11717.1|Name=mRNA_H-paniculata_contig47076.11717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
NYISLSEKKPKVQRMCDILSQSQFNLRYKPGKRNQLADALSRLPVPSTED
DESACRILDPHEVTVCFVGRSGITPTSLRSIPNVQPLQKPLVRETRSLTT
DEQLQFQWSDIQDSLSLTTPLSTYRTQ
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mRNA from alignment at H-paniculata_contig47076:189..570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47076.11717.1 ID=mRNA_H-paniculata_contig47076.11717.1|Name=mRNA_H-paniculata_contig47076.11717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=382bp|location=Sequence derived from alignment at H-paniculata_contig47076:189..570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTACATTAGTCTGTCAGAGAAAAAGCCGAAGGTCCAACGGATGTGCGA
TATACTTAGCCAGTCCCAGTTTAATTTGCGGTACAAACCCGGCAAGCGGA
ATCAGTTAGCAGATGCCTTGTCCCGTCTGCCCGTCCCTTCCACAGAAGAC
GACGAAAGCGCTTGCCGTATTCTAGACCCACATGAAGTTACAGTTTGTTT
TGTCGGACGCAGCGGTATTACGCCTACGTCTTTGCGTTCGATTCCGAACG
TGCAGCCGCTGCAGAAGCCACTGGTCCGGGAAACACGCTCCTTGACCACC
GACGAGCAACTGCAATTTCAATGGTCAGATATTCAAGACAGTCTTTCGCT
CACTACCCCACTATCGACGTATCGTACGCAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig47076:189..570+

>mRNA_H-paniculata_contig47076.11717.1 ID=mRNA_H-paniculata_contig47076.11717.1|Name=mRNA_H-paniculata_contig47076.11717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig47076:189..570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTACATTAGTCTGTCAGAGAAAAAGCCGAAGGTCCAACGGATGTGCGA
TATACTTAGCCAGTCCCAGTTTAATTTGCGGTACAAACCCGGCAAGCGGA
ATCAGTTAGCAGATGCCTTGTCCCGTCTGCCCGTCCCTTCCACAGAAGAC
GACGAAAGCGCTTGCCGTATTCTAGACCCACATGAAGTTACAGTTTGTTT
TGTCGGACGCAGCGGTATTACGCCTACGTCTTTGCGTTCGATTCCGAACG
TGCAGCCGCTGCAGAAGCCACTGGTCCGGGAAACACGCTCCTTGACCACC
GACGAGCAACTGCAATTTCAATGGTCAGATATTCAAGACAGTCTTTCGCT
CACTACCCCACTATCGACGTATCGTACGCAAAACTACATTAGTCTGTCAG
AGAAAAAGCCGAAGGTCCAACGGATGTGCGATATACTTAGCCAGTCCCAG
TTTAATTTGCGGTACAAACCCGGCAAGCGGAATCAGTTAGCAGATGCCTT
GTCCCGTCTGCCCGTCCCTTCCACAGAAGACGACGAAAGCGCTTGCCGTA
TTCTAGACCCACATGAAGTTACAGTTTGTTTTGTCGGACGCAGCGGTATT
ACGCCTACGTCTTTGCGTTCGATTCCGAACGTGCAGCCGCTGCAGAAGCC
ACTGGTCCGGGAAACACGCTCCTTGACCACCGACGAGCAACTGCAATTTC
AATGGTCAGATATTCAAGACAGTCTTTCGCTCACTACCCCACTATCGACG
TATCGTACGCAA
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