mRNA_H-paniculata_contig4703.11712.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4703.11712.1
Unique NamemRNA_H-paniculata_contig4703.11712.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4703.11712.1 vs. uniprot
Match: A0A6H5JL89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL89_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 7.170e-27
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    1 SAISPGSSAGTARRQSIRSEGGKDGEEHDVDNWMLVGEKLNAEERLSEDVKKVLVADITTSLRRLIDDISEDNWMFDRVDLG 246
            SA+SPGSS G +RRQS+ SEG  + E H +D+W LVGEKL AE+ L+ED KKVLV+DI +SLRRL+DDISEDNWM+D +DLG
Sbjct:    6 SALSPGSSVGASRRQSVGSEGKGEAEAHGMDHWALVGEKLTAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLG 87
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BLAST of mRNA_H-paniculata_contig4703.11712.1 vs. uniprot
Match: D7FQD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 6.520e-17
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   88 VDNWMLVGEKLNAEERLSEDVKKVLVADITTSLRRLIDDISEDNWMFDRVDLG 246
            +D+W LVGEKL AE+ L+ED KKVLV+DI +SLRRL+DDISEDNWM+D +DLG
Sbjct:    1 MDHWALVGEKLTAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLG 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4703.11712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL89_9PHAE7.170e-2767.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQD5_ECTSI6.520e-1771.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4703contigH-paniculata_contig4703:942..7190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_006520.1
Exons3
Model size930
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4703.11712.1prot_H-paniculata_contig4703.11712.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4703 1599..2159 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930400.2688613-UTR-H-paniculata_contig4703:941..15981622930400.2688613-UTR-H-paniculata_contig4703:941..1598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4703 942..1598 -
1691481274.3988976-UTR-H-paniculata_contig4703:941..15981691481274.3988976-UTR-H-paniculata_contig4703:941..1598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4703 942..1598 -
1622930400.3222644-UTR-H-paniculata_contig4703:2159..21971622930400.3222644-UTR-H-paniculata_contig4703:2159..2197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4703 2160..2197 -
1691481274.442026-UTR-H-paniculata_contig4703:2159..21971691481274.442026-UTR-H-paniculata_contig4703:2159..2197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4703 2160..2197 -
1622930400.3447845-UTR-H-paniculata_contig4703:7129..71901622930400.3447845-UTR-H-paniculata_contig4703:7129..7190Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4703 7130..7190 -
1691481274.4594975-UTR-H-paniculata_contig4703:7129..71901691481274.4594975-UTR-H-paniculata_contig4703:7129..7190Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4703 7130..7190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930400.2858958-CDS-H-paniculata_contig4703:1598..17151622930400.2858958-CDS-H-paniculata_contig4703:1598..1715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4703 1599..1715 -
1691481274.4154165-CDS-H-paniculata_contig4703:1598..17151691481274.4154165-CDS-H-paniculata_contig4703:1598..1715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4703 1599..1715 -
1622930400.3047853-CDS-H-paniculata_contig4703:2102..21591622930400.3047853-CDS-H-paniculata_contig4703:2102..2159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4703 2103..2159 -
1691481274.426257-CDS-H-paniculata_contig4703:2102..21591691481274.426257-CDS-H-paniculata_contig4703:2102..2159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4703 2103..2159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4703.11712.1

>prot_H-paniculata_contig4703.11712.1 ID=prot_H-paniculata_contig4703.11712.1|Name=mRNA_H-paniculata_contig4703.11712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MLVGEKLNAEERLSEDVKKVLVADITTSLRRLIDDISEDNWMFDRVDLGY
SNAQQKR*
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mRNA from alignment at H-paniculata_contig4703:942..7190-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4703.11712.1 ID=mRNA_H-paniculata_contig4703.11712.1|Name=mRNA_H-paniculata_contig4703.11712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6249bp|location=Sequence derived from alignment at H-paniculata_contig4703:942..7190- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGCAATATCGCCGGGATCGAGCGCGGGGACCGCCCGAAGACAGAGCAT
TAGGTCTGAAGGTAAGTTACCGATATAACACCCACCCACTCAACGGTTTC
GTTTGTTCATTCAATCATAACGATTGTCGTAATTGAAGTACATCACGTTG
TAGCCCAGAACTGCTAGATAGACTGCGATTCTCCATTGGTCTTTGCAACG
TTGATTTCCCCTTCGTCTAGTTGTGTGTCCTCGTATTTCTTGTCCTGTCT
ACAGTAGCACAGCTGAATACGTTTTGCCACTGAACTGTGCCTACTAGGGT
CGCCTCCTGAGGTGTGCAGCAATTTTCAGAATAGAAATAGACTCAGATCG
TTTAGCTGTACAGGCACTAGTTTCAAGTGGATTTCATTCTTTTTGACCCT
TTGCCGCAAAGGGGATCTAATCGGACACAGTGTAGACACGCGTAAAAATT
CCGATAACTGCTGTGCAGGAAGTACAGTGCCTGGGCAGAGAAGAGGGCCC
CGTTGAACGCAAATGTTAAAATCTGCTGACTGTCTTCTAGACATTTCATC
GAGATTGCGGAAACTTGGAATGTCCTCTGATTGGGTCCCTCGGGCCAACC
CGGCTGATTTCACCCGGCCAGGGTTTTGCTAGTCTCTGTTTGTCTCTCCG
TCCATCTGTTCCTTGTTTGCGATATGCATCATTTCCATGCGTAACAGCTA
TGCTGTAATAGACAGGTCCAAATAAATATCTGTCCAAACACCCTGCGACC
GCTCGAACCAGGTAGTAGTTGTACTATATTGGCATATTGACCATGGGCTG
TGCGTACTGTTGCCCATTTTGTTTCGCCCCTGTTCCCTCCTACAACCATC
TTCGCCCCAGGGAAATGTAAAAATCAAGTTATGTGTGGTCAAAGGGTAAA
AAATTGGATTTGTACAAAGCCAACCAGAGAGATACATTGAACGAAGACAA
CAAATCACCATTACGATAATCTATACCACTGTACTGTACACTACCCCTCT
CTGTAACATACTCCCTCTGTTCGGTTTGGCGCCATGGAACATAACTTTCT
ACCCGCTATACACCACAAACTATATATCATTCGAAAGCCCTTGATTTCTG
CTATCTCCTGAGTGTTTTCAAAATATAATTCCGATTTATTAACATTCCGA
AAGTCCAAGGTGAAAAAAGAACGGCCCTTTTTCTTCGTCAGAAATTTGTT
AAAAACCCGGAACTTTTTTTTTCCGCGTATTTTTTCAGTTACAGTCCTCC
TACACCACACACAGCACCATGGCAAGCCCTCCCAGCCCACCGCTGAGCCC
TGCCAGTTCAACAGTGAACCTTAGGGGGGCAGCGCCTAGTCCTCCAAGCC
CATCATTACATCCTGGAAGCCCATCCCGTCGTATCAAACACGGAGAGCTC
TCTCCAGGATCTCGTTACGGATTGGCATTACGGTCTGCAATGGCGTTGCC
ACCCGGGCAGACCAAGTTTCCCCATGGCATATACAAAGCGCTCGCGGATA
AGTGCGAGGACTGGTAGGGCTCAGCGGTGGACTGGGAGGGCTTGCCATGG
CGCTGTGTGTGGTGTAGGGGGGCTGCAACTGAAAAAATACACCGAAAAAA
AAGTCCCGTGTTCTTACAAATTTCTGACAAAAAAAGGACCGTTTTTTTTT
CACCTTGGACTTTCGGAATGTTAATAAATCGTAATTGTATTTTGAAAACA
TTCAGGAGATAGCGGAAATCAAGGGCTTTCGAATGATACACAGTTTGTGG
TGTATAACCCAAGGGGTAGAAAGTTATGCCTCATGGCGCCAAACCGGACA
GACATATGAGACAGAGGAAGTATATATGTAACTTTGCACTCAAATTAGTA
GTATTTGACCTCAACGATCGGTGTAGCTTCACGACAAGTAATTGTCATTG
TAGCACTTGAATTGTATCCCTCACATCTCACTGATAACAATGTACTCTAC
ATCGTCAATGTATATCATATTATGTTTGTCACGATATTCACGAGCGACTC
AAACACGGTACGTCACACACAGGTAAAACAACAAAGGGGTGAGGCCCACA
AGAAGTAATTTCTCTTACACTTATTATTTTTATTACTTACTGTTTATTTT
TTGTCGGACCCGGATAGACAATGCTTGAAGGTTAACTAGCAATGCTGATA
ATCCTCTTTATCAGACGTTAGCTGAATAGTGTTATTTTGATTTCTTTAAA
TCTCCTATCCCATGTGTGCGTGGCACGAATGAAAAGCAGCGTGTGGATGT
AAGCGGTGTTCAACACAACTAACGGGTTGTTGTCGGGTAGTCTCTGAACG
ATGGGACCTAGTCGTAATCCGCTTGCAGCTACAATGTGCCACATCATCTT
CCCCCTGTCCCTCCAACTAGCTACAGTCTGCCAAAAGCTCACCAACGCTT
ATCCTCGGAAATAATGGACTAGGGCGAAGGGGAGCGGGAGGTATGCCGCA
GGTGCAGCAGAAGCGATCCGAAATTGCAATTCTCATTTGTATTCGGCATG
TTGTCGGCGATAGCATATTTTCGTCGTTACGTTCGGATAGATTCCATGAT
CAGGCGATATTTTCTACATCGCTCTTGAAACTGCATGCAGAGAGTGATCG
CAGGACAGTTTGGCAGGGGTGAATCGAGCACCGTGGACCTTCGGCAGGCT
GACTTCATCGCGAAGTAAACGTGTTCACTTTCACGAGCAATTGGGGTGCA
AGCCACGATGTACATACATGATTGTATCACGTCAAATGACCGTATGAACG
AATGAACTCCCTACAATCTCCATAGATCACCCACCTCGATCTCTCTGGGA
AAGTTGTCTTACTACGATAAAGAGAGTACTGTGCGTTTCTTGACCGTTTG
ACCCAACGGTACATGACGTGAACATGTCGAGTAAATGCAGACATGATCCC
TCTGAGTTTTCCAAAGGATAAGGTGACGTAAAGCGCACGCGAAGCGCCTT
CAAATTCAGTGTAGCATAGGTGTCGGCACAAATGAACTCAACAGCTGCAC
TACTTACAACTCTGTATTGAACGAAGCTGGTGCTGCAGGTGATCAGTTTG
GTCCGCTGTTTTGCTGTTTGTCCGTTCAGTCAGGTCATGCAGTTCAGTGT
CTATCGCTCCTCAGCACTCGTTTGAAGCACGACCCACGACCCACAGACGC
GTACGTACCGTATTTTCGATGTTCTCTGCAGTTGAACGCTGACATGGCTT
CCCCTTTGACTCTCAGTCTCAGTCGTGCCCAGGAAATAGATTTTGTTTTT
CTTGTATATTTTGTATATTTCTTTACCGTCTCACCCTTACTGGTACCAGC
CTCTTCCGTGGTAATAATTCCTTTGCTGAACTCACAGACAACAACCCTTG
CCTTGTTGAATATGTTGGGAGATGTGGAAGTTGGCTAGGTGGGGCTCGTC
CTTCTCCACTACACTCAGGCATCCAGATCATACCTTTACAGGAATAAAAT
GGAAAATCCCCCGATCCCTGGAACGTTCTATTTTTGGAACATCCTTCTAG
ACTATTCTTATATTCTTTATTCCACCACATCTTAATGTACTCACAATCAG
TGTTAATATGAAAAAGTATCTTGTATACTTTCATCCAGAACTATCATTTC
GCTTATTTATGCTGCAGAGCACCAGAGTCTAACACCCCCACTTGTTCTAT
AGGGTAATTCAGCTTATGCGTACAATTCTCCCTTCGTATCGCACCCCCAA
CTTCATACACCAGAAAATATTCCACTGACTAACCATGACGTTGAGTTAAT
CTCTGATTATCCGCGTCACGAATTTTTTTTACATTCATATGTGCATTCGT
GTGTATCACAAATGGGCCTCTCTCCAGTGCCTTAGTAAGGATATCCGCGT
GCTAAAAACGCCTCCATGCAAATCTTCCTCGTTTTTTTTTTCAGTGCAGA
GTTGTTTCGTTACGAAGATCCTGTTTTTCTCATCAATCCCATCAGAGTTT
ATGGTAATACACACTTTCATAGCAGTCATTTCCGCCACTTTGGAACCTAA
TCGCAACCTGTTTAGTTGAATGTCATAGAATCTGGCGCTCGAATATTAGA
TACATCAATTATTTCCGTACAACAAACTGAGACAGATAGAATCTCGTGAG
CGTACACCAGGCAAAGTACTGTGCCCCATTCGATGCGTCTTGATCCAATA
TGAGAGGTGCAACACAATAGTTCTCTCTCGGCTTTCACCCCTATCGTATC
AGTTGACCAATACTATTCCTGTACAATTTAATGCGTTGTTGCGATACCCT
GCCCTTCATAGGGACCGCTCGCTCTGAAGGCATTTGAACGACGATATGCG
GCAGTGGGGCTATGTGCGGGATCGTAACGTCGTATAATGGTATCGACGAA
AATCGACAGGAATTGTGATCAGATTCTGATAAGGGTATAAACAGGAACAG
GTTAAGGGTGCATGAGGTACTATTCGTTCTTGTGTTTGATGGTTTGTGCA
AGCGCACCACCAATTGATAGGAACCCACGCAAACAACACCTATATGGTAC
ACACACGGCATACTGATTTCGCTTAACGCGCAGTGGTGGTGTTCCATGCG
CGTACGAATACTCGCTATGTGTGTCTAGAGCCAACGTGCGATCAGCATTC
AACCGCTCAGGCGACTCTGTTCTATTTTTACAGTATTCGTTGTAAACCGA
CCCAGTCATCCAAACCTACCCAACCCAAACTCTTCACCTCGAACCAATGC
TCTGGGTGTGGACATGCTTCATTTCTGTAGTGTCGATTGCGAACCAACCA
ACCCGCTCAATCCTACTCAAGCCAAATTCTGAATCTCGACCAAACACATG
TGGTGTGTCCAAGTCGGCATTAGTGGCGATGAATCAGAGCAAAACGCTGT
TTCTAGAGCGTTCAGAAATTACCATGATGTTACGCGACGAATTTTGACAA
GGCTACCACATGTGCAGCCTGGCCCGATAGCTCCACACCTGCACCGTTTT
CACCCGTAACATACTTATGAGTGCACAATGTTTATATGCCCAGGTGGAAA
AGATGGAGAAGAGCATGACGTCGACAACTGGATGCTCGTGGGTGAAAAAC
TAAACGCGGAAGAGCGTCTGTCAGAGGATGTCAAAAAGGTGTTAGGTTGT
TTGCGTATTGTCTATTGAAGGAAGAACTTCTTCCGCCGACATGTAACCTG
AAGAAAGTTTAGGGCACTCTGGACCTCCCACAGTGGGTAAAACCCACGGG
TAATTTCGTGTCCATTGATCGCGGAACGGATGGGATAGGGACCCCAATAA
CGGGGCATGTTGTTCGGCTTTGTTTCAGGCGGCATTTGCGTGGTCCTGCT
AATTGCGGGAAATACTTCCTCCTGATGACCTCAAATGTGTTTCTTTGTAC
AATACAGCAGGAGAGTTTTCCATACCTACAGTACGTCGTATGCCGCTTGG
CCTGCCTTTTCCTGGAATTCCTACCGATGATGCTGTCTCTCGTGTGTGTC
ACGTGTTTTTTGTGTGTTGAAACAGGTGTTGGTAGCAGACATAACAACCA
GTCTGCGAAGACTTATTGACGACATCAGCGAAGACAATTGGATGTTCGAC
CGGGTAGATCTTGGCTACAGCAATGCCCAACAGAAGCGATGACAGCGTGC
AATCATCTGGACGACGGGTGCCCAGGGGGGGTTGTCGCTGTTGAGTGATT
TCCGCCAGTCCTCCGTTTTCTTTGTTCTACACTAGCTGTGCCATGTTGTT
CGTAGTCAAGGTTGACCGTGCAAAGCTTCCGGGAGACCTTTGCTGATTCA
TAAGGTTATATATTTTCCCTTCCAACTTGACTGTAGTAGAGTATCGCCTA
GAGAACCGGACCGGATCCATTCCTACTCTGTGACCAAGAGAGTCGCTGGC
TCTCTGCTGGTGTAATGATGCTGAGATTAATTTGACTGCGTTCAGTAAGT
CATACTCTATTTTATGAAGGAGCCAAATGCGTGGCGACGGTAGACGATGA
TAACTTTTATGTGAAAGGCTTTTACCACGTACGGCACTTCATTTTTTGTT
TTATGCTCACCTTTCATGAATAGTGTTTTTTTCCCTCTTTTTGGTGCGAA
AGTTTCACCCCCCCCTACAATTACGAATAATTGGCGTATTCGCCACGAAA
ATTAGAAAGTATTCGCCTGAGTTTCAAAATGAGCTTGTGTATTCTATGTG
CCGTGGACCATTCACGAGTGCTGATAATACTCGTAAATTGAATGGGCAAG
CGTGGGTACGTTAGTTCATGTGTCTGCTCATTCTGAAACTCAAGCGAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4703:942..7190-

>mRNA_H-paniculata_contig4703.11712.1 ID=mRNA_H-paniculata_contig4703.11712.1|Name=mRNA_H-paniculata_contig4703.11712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig4703:942..7190- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGTGGGTGAAAAACTAAACGCGGAAGAGCGTCTGTCAGAGGATGT
CAAAAAGATGCTCGTGGGTGAAAAACTAAACGCGGAAGAGCGTCTGTCAG
AGGATGTCAAAAAGGTGTTGGTAGCAGACATAACAACCAGTCTGCGAAGA
CTTATTGACGACATCAGCGAAGACAATTGGATGTTCGACCGGGTAGATCT
TGGCTACAGCAATGCCCAACAGAAGCGATGAGTGTTGGTAGCAGACATAA
CAACCAGTCTGCGAAGACTTATTGACGACATCAGCGAAGACAATTGGATG
TTCGACCGGGTAGATCTTGGCTACAGCAATGCCCAACAGAAGCGATGA
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