prot_H-paniculata_contig47013.11710.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig47013.11710.1
Unique Nameprot_H-paniculata_contig47013.11710.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length231
Homology
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 8.080e-47
Identity = 97/235 (41.28%), Postives = 150/235 (63.83%), Query Frame = 0
Query:    5 EALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRKLK----VAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKL---IPEFSPFSLDTPFVRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMEDLAPLS 231
            EA++  +A KW+ A E E  +L+ N TW   D   LP GRKAI  KWVFK K K    +  YKARL+A+G+SQ  G D+ ET  PVA+ +++  + SLAA+H+ E++ MDV+ A+LN+ ++E++++++   + +     L  P ++ L+KSLYGLKQ+ R WN T++ F++ IGF +   +   Y  R +  E  +LV++YVDDL++A    E +   K  +S+RF+M DL PLS
Sbjct:   50 EAMESDNASKWKDACESEIKSLLDNKTW---DVVELPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLK-LKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLS 278          
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM)

HSP 1 Score: 159 bits (403), Expect = 4.790e-45
Identity = 93/230 (40.43%), Postives = 143/230 (62.17%), Query Frame = 0
Query:    6 ALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRKL----KVAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPFVRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVDDLVIAGRREKVD-EFKHNISQRFRMEDLAPL 230
            A++  DA KW+ A + E  +L+KN TW   D   LP GRKAI  +WVF+ K     ++  +KARL+A+GFSQ  G D+ ET APVA+ +++  V SLAA++  ++  MDV  A+LN  ++E++++   P+          V  L++SLYGLKQS R WN T++DF++++GF +  ++   Y  RD  G+  + VA+YVDDLV+A   +K+  + K  +S RF M D+  L
Sbjct:    8 AMESSDAAKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQ-PDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD--GQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQL 231          
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 161 bits (408), Expect = 4.800e-45
Identity = 93/230 (40.43%), Postives = 144/230 (62.61%), Query Frame = 0
Query:    6 ALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRKL----KVAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPFVRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMEDLAPL 230
            A++  DA KW+ A + E  +L+KN TW   D   LP GRKAI  +WVF+ K     ++  +KARL+A+GFSQ    D+ ET APVA+ +++  V SLAA++  ++  MDV  A+LN  ++E++++   P+          V  L++SLYGLKQS R WN T++DF++++GF +  ++   Y  RD  G+  + VA+YVDDLV+A   +++ +  KH +S+RF M DL  L
Sbjct:   30 AMESTDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQ-PDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGEL 253          
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 166 bits (419), Expect = 1.880e-44
Identity = 95/230 (41.30%), Postives = 145/230 (63.04%), Query Frame = 0
Query:    6 ALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRKL----KVAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPFVRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMEDLAPL 230
            A++  DA KW+ A + E  +L+KN TW   D   LP GRKAI  +WVF+ K     ++  +KARL+A+GFSQ  G D+ ET APVA+ +++  V SLAA++  ++  MDV  A+LN  ++E++++   P+          V  L++SLYGLKQS R WN T++DF++++GF +  ++   Y  RD  G+  + VA+YVDDLV+A   +++ D  KH +S+RF M DL  L
Sbjct:  289 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQ-PDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGEL 512          
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM)

HSP 1 Score: 164 bits (415), Expect = 2.820e-44
Identity = 94/230 (40.87%), Postives = 145/230 (63.04%), Query Frame = 0
Query:    6 ALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRKL----KVAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPFVRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMEDLAPL 230
            A++  DA KW+ A + E  +L+KN TW   D   LP GRKAI  +WVF+ K     ++  +KARL+A+GFSQ  G D+ ET APVA+ +++  V SLAA++  ++  MDV  A+LN  ++E++++   P+          V  L++SLYGLKQS R WN T++DF++++GF +  ++   Y  RD  G+  + VA+YVDDLV+A   +++ +  KH +S+RF M DL  L
Sbjct:  167 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQ-PDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGEL 390          
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM)

HSP 1 Score: 164 bits (415), Expect = 8.270e-44
Identity = 94/230 (40.87%), Postives = 145/230 (63.04%), Query Frame = 0
Query:    6 ALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRKL----KVAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPFVRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMEDLAPL 230
            A++  DA KW+ A + E  +L+KN TW   D   LP GRKAI  +WVF+ K     ++  +KARL+A+GFSQ  G D+ ET APVA+ +++  V SLAA++  ++  MDV  A+LN  ++E++++   P+          V  L++SLYGLKQS R WN T++DF++++GF +  ++   Y  RD  G+  + VA+YVDDLV+A   +++ +  KH +S+RF M DL  L
Sbjct:  164 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQ-PDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGEL 387          
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: A0A8H8J5M1_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8J5M1_9AGAM)

HSP 1 Score: 162 bits (411), Expect = 3.860e-43
Identity = 100/233 (42.92%), Postives = 140/233 (60.09%), Query Frame = 0
Query:    4 AEALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRKL----KVAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPFVRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRD-EGGETNL-LVAVYVDDLVIAGRREKVDEFKHNISQRFRMEDLAPL 230
            AEAL GPDA KW+AAMEEE   L K GT++  +   LPAGRKA+  KWV   K     +   YKARL+AQGFSQ  G DF +T APV R+ ++  + SLA ++D++I  +DV +AYL+A VEEEL++K IP F      T  V  L +SLYGLKQ+ R WN   +  L ++G+    T++  Y   D + G+  + ++A +VDDLV+   R   +   + +   F M DL  +
Sbjct:   79 AEALSGPDAAKWQAAMEEEVNTLKKMGTYQLVE---LPAGRKAMGNKWVLTIKRNELGEPIRYKARLVAQGFSQQPGIDFGQTFAPVVRLDSIRILASLANQNDWDIRQLDVHSAYLHAKVEEELYMKQIPHFED---GTSLVLRLNRSLYGLKQAGRMWNQMFDSKLKQLGYLPCATDTCVYHRIDIDAGKPRVSILANHVDDLVVITSRNNTESVLNELLHEFEMRDLGAI 305          
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM)

HSP 1 Score: 164 bits (415), Expect = 8.170e-43
Identity = 95/230 (41.30%), Postives = 145/230 (63.04%), Query Frame = 0
Query:    6 ALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRKL----KVAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPFVRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMEDLAPL 230
            A++  DA KW+ A + E  +L+KN TW   D   LP GRKAI  +WVF+ K     +V  +KARL+A+GFSQ  G D+ ET APVA+ +++  V SLAA++  ++  MDV  A+LN  ++E++++   P+          V  L++SLYGLKQS R WN T++DF++++GF +  ++   Y  RD  G+  + VA+YVDDLV+A   +++ +  KH +S+RF M DL  L
Sbjct:  662 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEVERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQ-PDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGEL 885          
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: A0A8J5ZDK7_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZDK7_9ROSI)

HSP 1 Score: 160 bits (405), Expect = 8.230e-43
Identity = 91/231 (39.39%), Postives = 143/231 (61.90%), Query Frame = 0
Query:    5 EALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRK-----LKVAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPFVRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMEDLAP 229
            EA+   D+EKW  AM+EE  +L KN TW   D  +LP G+K +R KWVFK+K     ++   YKARL+A+G+SQV G DF++  +PV + S++ ++  + A HD E+E +DV  A+L+  +EE+++++  PE    S    +V  L+KSLYGLKQS R W    + F+    F R + +S  YF ++  G    L+ +YVDD++IA + + ++ + K  +S+ F M+DL P
Sbjct:  260 EAISCEDSEKWMFAMQEEMESLHKNKTW---DLVKLPKGKKTVRCKWVFKKKEGTPGVEEPKYKARLVAKGYSQVPGVDFTDVFSPVVKHSSIRALLGIVAMHDLELEQLDVKTAFLHGELEEDIYMQQ-PEGFTVSEKEDYVCLLKKSLYGLKQSPRQWYKRFDSFMTSHDFKRSSFDSCVYFKKNNDGSFVYLL-LYVDDMLIAAKDKGEIRKVKSQLSEEFEMKDLGP 485          
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 159 bits (401), Expect = 9.330e-43
Identity = 96/232 (41.38%), Postives = 140/232 (60.34%), Query Frame = 0
Query:    7 LKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTKWVFKRKLKVA----HYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAAEHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPF---VRPLRKSLYGLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVDDLVIA-GRREKVDEFKHNISQRFRMEDLAPL 230
            ++  DA KW+ A E E+ +L KN TWE      LP GRKAI +KWVFK K  V      YKARL+A+GF Q  G DF ET APVA+ +++  + S+AA++   +  MDV  A+LN  +EEE+++K    F    +D  +   V  L+++LYGLKQS R WN T+++F+ +IGF +  T+   Y  RD+  +  + V +YVDDL++A    + +   K  +S+RF M DL  L
Sbjct:    1 MESSDASKWKEACESEFESLCKNKTWELVP---LPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGF----VDAKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD--KAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGEL 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47013.11710.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WHK2_9STRA8.080e-4741.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H7D1_PHYRM4.790e-4540.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H8P6_PHYRM4.800e-4540.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H9Y1_PHYRM1.880e-4441.30CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H7U0_PHYRM2.820e-4440.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3HA00_PHYRM8.270e-4440.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H8J5M1_9AGAM3.860e-4342.92Retrovirus-related Pol polyprotein from transposon... [more]
H3H4L3_PHYRM8.170e-4341.30Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
A0A8J5ZDK7_9ROSI8.230e-4339.39Integrase catalytic domain-containing protein n=2 ... [more]
A0A5D6YB57_9STRA9.330e-4341.38Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 40..230
e-value: 4.1E-52
score: 177.2
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 13..172
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 13..172
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 62..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47013contigH-paniculata_contig47013:109..801 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47013.11710.1mRNA_H-paniculata_contig47013.11710.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig47013 109..801 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig47013.11710.1 ID=prot_H-paniculata_contig47013.11710.1|Name=mRNA_H-paniculata_contig47013.11710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
ESAAEALKGPDAEKWRAAMEEEWGALVKNGTWESEDPGRLPAGRKAIRTK
WVFKRKLKVAHYKARLMAQGFSQVEGEDFSETSAPVARMSTLHSVFSLAA
EHDFEIEGMDVDAAYLNAPVEEELFVKLIPEFSPFSLDTPFVRPLRKSLY
GLKQSDRNWNNTLNDFLIEIGFNRFTTNSWPYFSRDEGGETNLLVAVYVD
DLVIAGRREKVDEFKHNISQRFRMEDLAPLS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like