mRNA_H-paniculata_contig47011.11709.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47011.11709.1
Unique NamemRNA_H-paniculata_contig47011.11709.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47011.11709.1 vs. uniprot
Match: D7G259_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G259_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.210e-20
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 MTFLTRTCEGLSRWAGEAMATLGAERERAHALHRENAHVSREATIAQKGVLSLEAKVFHAAKEV 192
            +TF   T E LSRWAGEAM TLG ER+RAHALHRENA VSREAT+AQK ++SLEAK+FH  KE+
Sbjct:  161 VTFAAHTAEALSRWAGEAMETLGRERDRAHALHRENAQVSREATLAQKEIMSLEAKIFHTRKEL 224
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BLAST of mRNA_H-paniculata_contig47011.11709.1 vs. uniprot
Match: A0A6H5JUH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.080e-19
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 MTFLTRTCEGLSRWAGEAMATLGAERERAHALHRENAHVSREATIAQKGVLSLEAKVFHAAKEV 192
            +TF   T E LSRWAGEAM TLG ER+RAH+LHRENA VSREAT+AQK ++SLEAK+FH  KE+
Sbjct:  161 VTFAAHTAEALSRWAGEAMETLGRERDRAHSLHRENAQVSREATLAQKEIMSLEAKIFHTRKEL 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47011.11709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G259_ECTSI4.210e-2071.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUH9_9PHAE1.080e-1970.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47011contigH-paniculata_contig47011:189..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930400.05352-CDS-H-paniculata_contig47011:188..3801622930400.05352-CDS-H-paniculata_contig47011:188..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47011 189..380 -
1691481274.3117218-CDS-H-paniculata_contig47011:188..3801691481274.3117218-CDS-H-paniculata_contig47011:188..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47011 189..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47011.11709.1prot_H-paniculata_contig47011.11709.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47011 189..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47011.11709.1

>prot_H-paniculata_contig47011.11709.1 ID=prot_H-paniculata_contig47011.11709.1|Name=mRNA_H-paniculata_contig47011.11709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MTFLTRTCEGLSRWAGEAMATLGAERERAHALHRENAHVSREATIAQKGV
LSLEAKVFHAAKEV
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mRNA from alignment at H-paniculata_contig47011:189..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47011.11709.1 ID=mRNA_H-paniculata_contig47011.11709.1|Name=mRNA_H-paniculata_contig47011.11709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig47011:189..380- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTTTCTCACCAGGACATGCGAAGGCCTATCTCGCTGGGCGGGCGA
AGCCATGGCCACGCTGGGAGCAGAAAGGGAGCGAGCGCACGCTCTACATC
GTGAGAATGCACATGTGTCGAGGGAGGCCACGATAGCGCAGAAGGGCGTT
CTGTCGCTAGAGGCGAAGGTCTTCCATGCGGCAAAAGAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig47011:189..380-

>mRNA_H-paniculata_contig47011.11709.1 ID=mRNA_H-paniculata_contig47011.11709.1|Name=mRNA_H-paniculata_contig47011.11709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig47011:189..380- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTTTCTCACCAGGACATGCGAAGGCCTATCTCGCTGGGCGGGCGA
AGCCATGGCCACGCTGGGAGCAGAAAGGGAGCGAGCGCACGCTCTACATC
GTGAGAATGCACATGTGTCGAGGGAGGCCACGATAGCGCAGAAGGGCGTT
CTGTCGCTAGAGGCGAAGGTCTTCCATGCGGCAAAAGAGGTAATGACGTT
TCTCACCAGGACATGCGAAGGCCTATCTCGCTGGGCGGGCGAAGCCATGG
CCACGCTGGGAGCAGAAAGGGAGCGAGCGCACGCTCTACATCGTGAGAAT
GCACATGTGTCGAGGGAGGCCACGATAGCGCAGAAGGGCGTTCTGTCGCT
AGAGGCGAAGGTCTTCCATGCGGCAAAAGAGGTA
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