mRNA_H-paniculata_contig47003.11708.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47003.11708.1
Unique NamemRNA_H-paniculata_contig47003.11708.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47003.11708.1 vs. uniprot
Match: D7FZC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.600e-9
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 RPPFTKGLTRTFPAPFTPPL---GAFGEAGLSRADLIMEVNGNRFGDARSRWW 150
            +PP+T+G T   PAPF       G FGEAGL   DLI+ +NG RFG+ RSRWW
Sbjct:  434 KPPYTRGYTSLVPAPFVVSATSQGPFGEAGLEGGDLILAINGERFGEERSRWW 486
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BLAST of mRNA_H-paniculata_contig47003.11708.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.550e-6
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 RPPFTKGLTRTFPAPFTPPL---GAFGEAGLSRADLIMEVNGNRFGDARSRW 147
            RPP+T+G T   PAPF       G F EAGL   DLI+ +NG RFG+  SRW
Sbjct:  471 RPPYTRGYTSLVPAPFVVSATSQGPFEEAGLESGDLILAINGERFGEESSRW 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47003.11708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZC5_ECTSI3.600e-954.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA82_9PHAE2.550e-651.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47003contigH-paniculata_contig47003:224..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930399.9978006-CDS-H-paniculata_contig47003:223..4991622930399.9978006-CDS-H-paniculata_contig47003:223..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47003 224..499 -
1691481274.3023067-CDS-H-paniculata_contig47003:223..4991691481274.3023067-CDS-H-paniculata_contig47003:223..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47003 224..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47003.11708.1prot_H-paniculata_contig47003.11708.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47003 224..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47003.11708.1

>prot_H-paniculata_contig47003.11708.1 ID=prot_H-paniculata_contig47003.11708.1|Name=mRNA_H-paniculata_contig47003.11708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
RPPFTKGLTRTFPAPFTPPLGAFGEAGLSRADLIMEVNGNRFGDARSRWW
EDDGRFLPDMEGFEDPAAGDETRGEVGREGNGAVAVGEEGAG
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mRNA from alignment at H-paniculata_contig47003:224..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47003.11708.1 ID=mRNA_H-paniculata_contig47003.11708.1|Name=mRNA_H-paniculata_contig47003.11708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig47003:224..499- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCGCCGTTCACCAAGGGGCTGACGCGAACTTTCCCCGCTCCGTTCAC
GCCTCCCCTCGGAGCGTTCGGAGAGGCTGGTCTATCACGCGCCGACCTGA
TTATGGAGGTGAACGGAAACAGATTCGGAGATGCTCGCAGCCGATGGTGG
GAGGACGATGGACGCTTTTTGCCCGACATGGAGGGGTTCGAAGACCCCGC
TGCTGGAGACGAGACGCGAGGGGAAGTGGGAAGGGAGGGCAACGGGGCAG
TGGCCGTTGGGGAGGAGGGGGCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig47003:224..499-

>mRNA_H-paniculata_contig47003.11708.1 ID=mRNA_H-paniculata_contig47003.11708.1|Name=mRNA_H-paniculata_contig47003.11708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig47003:224..499- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCGCCGTTCACCAAGGGGCTGACGCGAACTTTCCCCGCTCCGTTCAC
GCCTCCCCTCGGAGCGTTCGGAGAGGCTGGTCTATCACGCGCCGACCTGA
TTATGGAGGTGAACGGAAACAGATTCGGAGATGCTCGCAGCCGATGGTGG
GAGGACGATGGACGCTTTTTGCCCGACATGGAGGGGTTCGAAGACCCCGC
TGCTGGAGACGAGACGCGAGGGGAAGTGGGAAGGGAGGGCAACGGGGCAG
TGGCCGTTGGGGAGGAGGGGGCGGGAAGGCCGCCGTTCACCAAGGGGCTG
ACGCGAACTTTCCCCGCTCCGTTCACGCCTCCCCTCGGAGCGTTCGGAGA
GGCTGGTCTATCACGCGCCGACCTGATTATGGAGGTGAACGGAAACAGAT
TCGGAGATGCTCGCAGCCGATGGTGGGAGGACGATGGACGCTTTTTGCCC
GACATGGAGGGGTTCGAAGACCCCGCTGCTGGAGACGAGACGCGAGGGGA
AGTGGGAAGGGAGGGCAACGGGGCAGTGGCCGTTGGGGAGGAGGGGGCGG
GA
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