mRNA_H-paniculata_contig470.11704.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig470.11704.1
Unique NamemRNA_H-paniculata_contig470.11704.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig470.11704.1 vs. uniprot
Match: A0A6H5KTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTT4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.260e-22
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 RSKERDMQDWHATLAIYFDRCQTWLLKTSRVPVANSILKSPKLSFRLGRIDGKSEAYTTASRAGKG 198
            RSK+RD QDW+ATL IYFDRCQTWLLK +RVPV NS+LK+  L+FRL R+DGK EA+  A+ +G G
Sbjct:  155 RSKDRDTQDWNATLTIYFDRCQTWLLKVARVPVGNSVLKNSALNFRLNRLDGKREAFGGAAASGGG 220
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BLAST of mRNA_H-paniculata_contig470.11704.1 vs. uniprot
Match: D7G7T7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T7_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.390e-20
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 RSKERDMQDWHATLAIYFDRCQTWLLKTSRVPVANSILKSPKLSFRLGRIDGKSEAY 171
            RSK+RD QDW+ATL IYFDRCQTWLLK +RVPV NS+LK+  L+FRL R DGK EA+
Sbjct:  156 RSKDRDTQDWNATLTIYFDRCQTWLLKAARVPVGNSVLKNSALNFRLNRRDGKREAF 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig470.11704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTT4_9PHAE4.260e-2266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7T7_ECTSI2.390e-2071.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig470contigH-paniculata_contig470:12924..13121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size199
Cds size180
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930399.5430129-UTR-H-paniculata_contig470:12923..129411622930399.5430129-UTR-H-paniculata_contig470:12923..12941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig470 12924..12941 +
1691481274.0598195-UTR-H-paniculata_contig470:12923..129411691481274.0598195-UTR-H-paniculata_contig470:12923..12941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig470 12924..12941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930399.552827-CDS-H-paniculata_contig470:12941..131211622930399.552827-CDS-H-paniculata_contig470:12941..13121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig470 12942..13121 +
1691481274.0808656-CDS-H-paniculata_contig470:12941..131211691481274.0808656-CDS-H-paniculata_contig470:12941..13121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig470 12942..13121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig470.11704.1prot_H-paniculata_contig470.11704.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig470 12942..13121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig470.11704.1

>prot_H-paniculata_contig470.11704.1 ID=prot_H-paniculata_contig470.11704.1|Name=mRNA_H-paniculata_contig470.11704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MQDWHATLAIYFDRCQTWLLKTSRVPVANSILKSPKLSFRLGRIDGKSEA
YTTASRAGKG
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mRNA from alignment at H-paniculata_contig470:12924..13121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig470.11704.1 ID=mRNA_H-paniculata_contig470.11704.1|Name=mRNA_H-paniculata_contig470.11704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig470:12924..13121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCTAAGGAACGAGATATGCAGGACTGGCATGCAACACTAGCGATCTA
CTTCGACCGTTGTCAGACCTGGCTACTGAAAACGTCGCGTGTACCAGTCG
CAAACTCCATTCTCAAGAGCCCCAAATTATCTTTCCGACTTGGTCGCATC
GACGGTAAATCGGAGGCGTACACTACAGCAAGCAGAGCCGGTAAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig470:12924..13121+

>mRNA_H-paniculata_contig470.11704.1 ID=mRNA_H-paniculata_contig470.11704.1|Name=mRNA_H-paniculata_contig470.11704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig470:12924..13121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGACTGGCATGCAACACTAGCGATCTACTTCGACCGTTGTCAGAC
CTGGCTACTGAAAACGTCGCGTGTACCAGTCGCAAACTCCATTCTCAAGA
GCCCCAAATTATCTTTCCGACTTGGTCGCATCGACGGTAAATCGGAGGCG
TACACTACAGCAAGCAGAGCCGGTAAGGGGATGCAGGACTGGCATGCAAC
ACTAGCGATCTACTTCGACCGTTGTCAGACCTGGCTACTGAAAACGTCGC
GTGTACCAGTCGCAAACTCCATTCTCAAGAGCCCCAAATTATCTTTCCGA
CTTGGTCGCATCGACGGTAAATCGGAGGCGTACACTACAGCAAGCAGAGC
CGGTAAGGGG
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