mRNA_H-paniculata_contig46984.11695.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46984.11695.1
Unique NamemRNA_H-paniculata_contig46984.11695.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46984.11695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46984contigH-paniculata_contig46984:966..1455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size186
Cds size156
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46984.11695.1prot_H-paniculata_contig46984.11695.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46984 966..1425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.4028575-CDS-H-paniculata_contig46984:965..10401622930398.4028575-CDS-H-paniculata_contig46984:965..1040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46984 966..1040 +
1691481273.5010822-CDS-H-paniculata_contig46984:965..10401691481273.5010822-CDS-H-paniculata_contig46984:965..1040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46984 966..1040 +
1622930398.420584-CDS-H-paniculata_contig46984:1344..14251622930398.420584-CDS-H-paniculata_contig46984:1344..1425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46984 1345..1425 +
1691481273.510741-CDS-H-paniculata_contig46984:1344..14251691481273.510741-CDS-H-paniculata_contig46984:1344..1425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46984 1345..1425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.4349825-UTR-H-paniculata_contig46984:1425..14551622930398.4349825-UTR-H-paniculata_contig46984:1425..1455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46984 1426..1455 +
1691481273.5197408-UTR-H-paniculata_contig46984:1425..14551691481273.5197408-UTR-H-paniculata_contig46984:1425..1455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46984 1426..1455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46984.11695.1

>prot_H-paniculata_contig46984.11695.1 ID=prot_H-paniculata_contig46984.11695.1|Name=mRNA_H-paniculata_contig46984.11695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
SNHWRATGRAAIHSRYEASCTTVCRRNPNPKRLLTVSEGMAEQAGTQRRC
K*
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mRNA from alignment at H-paniculata_contig46984:966..1455+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46984.11695.1 ID=mRNA_H-paniculata_contig46984.11695.1|Name=mRNA_H-paniculata_contig46984.11695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=490bp|location=Sequence derived from alignment at H-paniculata_contig46984:966..1455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAACCACTGGAGAGCTACAGGCCGAGCCGCCATCCACTCAAGGTATGA
AGCGTCGTGCACAACTGTTTGCAGAGTAATTTGTCGTGGATTTGCTTGTT
TATGCAGTGGCCTCGATCTTGTGCCGTATTGTGTTTCATGTGCTCCATTG
TACCAGTAGTGCAGTTCAAAAATCGCTAGGTGCAAGTGCTGGTGTAGCTT
CGACGCCAAGCATCTCTATTGTTGACCTATCTCGTCGTTTGTTATGGATG
TACCGCACTGAAGGCTCGTGGAAGTGAATGGCAATGTTGTTGTGGCTGTG
TAGAGCGGCAATTTTCAAATTCATTTGTTTGTTCGCCATAATGGTGCTCC
CAAACTGTTGTTGTCCCTGTTACACAAAGCGTAACCCTAACCCTAAGAGG
CTCTTGACTGTGAGCGAAGGAATGGCGGAGCAGGCTGGTACACAGAGGAG
ATGCAAGTAGTGAAGAAGTCGCTTGACGATCATCACGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig46984:966..1455+

>mRNA_H-paniculata_contig46984.11695.1 ID=mRNA_H-paniculata_contig46984.11695.1|Name=mRNA_H-paniculata_contig46984.11695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig46984:966..1455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAACCACTGGAGAGCTACAGGCCGAGCCGCCATCCACTCAAGGTATGA
AGCGTCGTGCACAACTGTTTGCAGAAGTAACCACTGGAGAGCTACAGGCC
GAGCCGCCATCCACTCAAGGTATGAAGCGTCGTGCACAACTGTTTGCAGA
CGTAACCCTAACCCTAAGAGGCTCTTGACTGTGAGCGAAGGAATGGCGGA
GCAGGCTGGTACACAGAGGAGATGCAAGTAGCGTAACCCTAACCCTAAGA
GGCTCTTGACTGTGAGCGAAGGAATGGCGGAGCAGGCTGGTACACAGAGG
AGATGCAAGTAG
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