mRNA_H-paniculata_contig4698.11692.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4698.11692.1
Unique NamemRNA_H-paniculata_contig4698.11692.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: D7FTU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU0_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.840e-17
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W  YRPE Y+YEV+EC RR++LTG AVF+  D +AQI + L LA V  VV+EILSP+ R ++MW
Sbjct:   44 WGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMW 107          
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.030e-16
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W  Y+P  Y+YEVVEC RR++LTG AVF+  D +AQ+ + L LA V  VV+EILSP+ R ++MW
Sbjct:  896 WEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMW 959          
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.030e-16
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W  Y+P  Y+YEVVEC RR++LTG AVF+  D +AQ+ + L LA V  VV+EILSP+ R ++MW
Sbjct:  915 WEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMW 978          
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.920e-16
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W  Y+P  Y+YEVVEC RR++LTG AVF+  D +AQ+ + L LA V  VV+E LSP+ R ++MW
Sbjct:  909 WEPYKPSTYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMW 972          
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 8.080e-15
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W  YRPE ++YEV+EC RRV LTG  VF+  + AAQ+ VT+ +AF   +V E+L+PYR   DMW
Sbjct: 1012 WEPYRPERFYYEVIECGRRVLLTGVVVFIYPNTAAQVAVTILIAFFFLMVYEMLAPYRSDSDMW 1075          
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.790e-14
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W+ YRP V++YEV EC  RV L G  VF+  D AAQI VTL +AF   +V+E+LSPY    D W
Sbjct:  555 WKPYRPSVFYYEVFECGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRW 618          
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.810e-14
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W  YRPE ++YEVVEC RRV LTG  VF+  + AAQI +TL  AF    + E++SPY+   DMW
Sbjct:  900 WEPYRPERFYYEVVECGRRVMLTGVVVFIFPNDAAQIAITLLSAFCFFAIFEMVSPYKSDSDMW 963          
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.840e-14
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W AY+PE ++YEV+EC RR+ LTG  VF+  + AAQI +T+ +A     V +ILSPY    DMW
Sbjct:  894 WEAYKPERFYYEVIECGRRIMLTGVVVFIYPNDAAQIAITILIAVFFFAVFDILSPYTSEFDMW 957          
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 5.240e-14
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W+ YRP VY+YEV+EC RR+ LTG  VF+  + AAQI +TL +  V  V++E L PY ++ D W
Sbjct:  874 WQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTW 937          
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 5.290e-14
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVVTEILSPYRRSLDMW 192
            W+ YRP VY+YEV+EC RR+ LTG  VF+  + AAQI +TL +  V  V++E L PY ++ D W
Sbjct: 2612 WQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTW 2675          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4698.11692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTU0_ECTSI1.840e-1757.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE1.030e-1654.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI1.030e-1654.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTU5_ECTSI1.920e-1653.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWT9_9PHAE8.080e-1553.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH65_ECTSI2.790e-1453.13Polymorphic outer membrane protein G/I family prot... [more]
A0A6H5KX12_9PHAE2.810e-1453.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM10_ECTSI3.840e-1450.00Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7FHH1_ECTSI5.240e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI5.290e-1450.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4698contigH-paniculata_contig4698:10281..10473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog2880.D7FTT9
Hectar predicted targeting categorysignal anchor
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.2086167-CDS-H-paniculata_contig4698:10280..104721622930398.2086167-CDS-H-paniculata_contig4698:10280..10472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4698 10281..10472 +
1691481273.4497755-CDS-H-paniculata_contig4698:10280..104721691481273.4497755-CDS-H-paniculata_contig4698:10280..10472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4698 10281..10472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4698.11692.1prot_H-paniculata_contig4698.11692.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4698 10281..10472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4698.11692.1

>prot_H-paniculata_contig4698.11692.1 ID=prot_H-paniculata_contig4698.11692.1|Name=mRNA_H-paniculata_contig4698.11692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
WRAYRPEVYFYEVVECLRRVSLTGTAVFLPSDGAAQIGVTLWLAFVMGVV
TEILSPYRRSLDMW
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mRNA from alignment at H-paniculata_contig4698:10281..10473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4698.11692.1 ID=mRNA_H-paniculata_contig4698.11692.1|Name=mRNA_H-paniculata_contig4698.11692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=193bp|location=Sequence derived from alignment at H-paniculata_contig4698:10281..10473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCGAGCGTACCGGCCTGAGGTATACTTTTACGAGGTGGTGGAATGTCT TCGTCGGGTTTCCTTGACGGGCACGGCGGTGTTTTTGCCTTCCGACGGCG CGGCCCAGATCGGCGTCACGCTGTGGCTGGCCTTCGTGATGGGAGTCGTG ACGGAGATTCTTTCCCCGTACCGTCGTTCCCTGGATATGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4698:10281..10473+

>mRNA_H-paniculata_contig4698.11692.1 ID=mRNA_H-paniculata_contig4698.11692.1|Name=mRNA_H-paniculata_contig4698.11692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig4698:10281..10473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCGAGCGTACCGGCCTGAGGTATACTTTTACGAGGTGGTGGAATGTCT
TCGTCGGGTTTCCTTGACGGGCACGGCGGTGTTTTTGCCTTCCGACGGCG
CGGCCCAGATCGGCGTCACGCTGTGGCTGGCCTTCGTGATGGGAGTCGTG
ACGGAGATTCTTTCCCCGTACCGTCGTTCCCTGGATATGTGGTGGCGAGC
GTACCGGCCTGAGGTATACTTTTACGAGGTGGTGGAATGTCTTCGTCGGG
TTTCCTTGACGGGCACGGCGGTGTTTTTGCCTTCCGACGGCGCGGCCCAG
ATCGGCGTCACGCTGTGGCTGGCCTTCGTGATGGGAGTCGTGACGGAGAT
TCTTTCCCCGTACCGTCGTTCCCTGGATATGTGG
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