mRNA_H-paniculata_contig46972.11690.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46972.11690.1
Unique NamemRNA_H-paniculata_contig46972.11690.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46972.11690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46972contigH-paniculata_contig46972:84..874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size791
Cds size789
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.0331593-CDS-H-paniculata_contig46972:83..8721622930398.0331593-CDS-H-paniculata_contig46972:83..872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46972 84..872 +
1691481273.3989193-CDS-H-paniculata_contig46972:83..8721691481273.3989193-CDS-H-paniculata_contig46972:83..872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46972 84..872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46972.11690.1prot_H-paniculata_contig46972.11690.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46972 84..872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46972.11690.1

>prot_H-paniculata_contig46972.11690.1 ID=prot_H-paniculata_contig46972.11690.1|Name=mRNA_H-paniculata_contig46972.11690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
SRDATWQCVSPVPTTVPTISLPDNGEDSGGGEGGRKYEGTGKEEEKGSES
CSSGSERGSDLSDRYDSDSRKSDRTSSEEVLPGRHQSEETDSESERDQSR
VGFVAHTAPATTPGLGTATPPAKTSAVAPLDGRAATPSVFQGASLEAPTP
VASIGGGSTPREVISSLGSTDPSAWIEGSGINVHESPVPSSSDAGTGENA
STPSLGGREAHRLEWTAAGPTGIMPGRTRGDVARLHAAHSGALICADIGI
EASVPEDFRKLQY
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mRNA from alignment at H-paniculata_contig46972:84..874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46972.11690.1 ID=mRNA_H-paniculata_contig46972.11690.1|Name=mRNA_H-paniculata_contig46972.11690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=791bp|location=Sequence derived from alignment at H-paniculata_contig46972:84..874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAGAGATGCCACTTGGCAATGCGTTTCACCCGTCCCTACCACTGTACC
AACGATTTCTCTGCCAGATAATGGGGAGGATTCAGGAGGTGGGGAGGGAG
GGAGAAAGTACGAGGGTACCGGCAAAGAGGAGGAAAAGGGGAGCGAGTCT
TGCAGCAGCGGGAGCGAGCGCGGGAGCGACCTCTCGGACCGCTACGATTC
CGATAGCCGCAAGTCCGATCGTACATCGTCCGAGGAGGTGCTGCCCGGCC
GCCATCAGTCAGAGGAGACCGACAGCGAGAGCGAGCGAGACCAGTCAAGG
GTCGGCTTCGTGGCGCACACGGCTCCCGCAACTACCCCTGGGCTGGGGAC
TGCGACGCCGCCTGCAAAGACTTCGGCAGTTGCTCCTTTGGATGGGAGGG
CTGCCACACCGAGCGTTTTCCAGGGTGCCTCGTTGGAGGCGCCCACACCC
GTCGCGTCGATAGGCGGCGGGAGTACACCCAGGGAGGTAATAAGCTCTCT
GGGCAGTACTGATCCGAGTGCTTGGATAGAAGGCTCGGGCATCAATGTTC
ACGAGAGTCCGGTACCGTCATCCTCTGATGCAGGGACCGGTGAAAATGCA
TCCACCCCTTCTTTAGGTGGGAGGGAAGCACACCGACTCGAGTGGACAGC
GGCAGGACCGACGGGGATTATGCCGGGACGTACACGTGGTGATGTGGCTA
GGTTGCATGCTGCCCACAGTGGGGCACTCATCTGCGCGGATATCGGGATC
GAGGCTTCGGTGCCTGAGGATTTCCGGAAACTGCAGTACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig46972:84..874+

>mRNA_H-paniculata_contig46972.11690.1 ID=mRNA_H-paniculata_contig46972.11690.1|Name=mRNA_H-paniculata_contig46972.11690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig46972:84..874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAGAGATGCCACTTGGCAATGCGTTTCACCCGTCCCTACCACTGTACC
AACGATTTCTCTGCCAGATAATGGGGAGGATTCAGGAGGTGGGGAGGGAG
GGAGAAAGTACGAGGGTACCGGCAAAGAGGAGGAAAAGGGGAGCGAGTCT
TGCAGCAGCGGGAGCGAGCGCGGGAGCGACCTCTCGGACCGCTACGATTC
CGATAGCCGCAAGTCCGATCGTACATCGTCCGAGGAGGTGCTGCCCGGCC
GCCATCAGTCAGAGGAGACCGACAGCGAGAGCGAGCGAGACCAGTCAAGG
GTCGGCTTCGTGGCGCACACGGCTCCCGCAACTACCCCTGGGCTGGGGAC
TGCGACGCCGCCTGCAAAGACTTCGGCAGTTGCTCCTTTGGATGGGAGGG
CTGCCACACCGAGCGTTTTCCAGGGTGCCTCGTTGGAGGCGCCCACACCC
GTCGCGTCGATAGGCGGCGGGAGTACACCCAGGGAGGTAATAAGCTCTCT
GGGCAGTACTGATCCGAGTGCTTGGATAGAAGGCTCGGGCATCAATGTTC
ACGAGAGTCCGGTACCGTCATCCTCTGATGCAGGGACCGGTGAAAATGCA
TCCACCCCTTCTTTAGGTGGGAGGGAAGCACACCGACTCGAGTGGACAGC
GGCAGGACCGACGGGGATTATGCCGGGACGTACACGTGGTGATGTGGCTA
GGTTGCATGCTGCCCACAGTGGGGCACTCATCTGCGCGGATATCGGGATC
GAGGCTTCGGTGCCTGAGGATTTCCGGAAACTGCAGTACAGTAGAGATGC
CACTTGGCAATGCGTTTCACCCGTCCCTACCACTGTACCAACGATTTCTC
TGCCAGATAATGGGGAGGATTCAGGAGGTGGGGAGGGAGGGAGAAAGTAC
GAGGGTACCGGCAAAGAGGAGGAAAAGGGGAGCGAGTCTTGCAGCAGCGG
GAGCGAGCGCGGGAGCGACCTCTCGGACCGCTACGATTCCGATAGCCGCA
AGTCCGATCGTACATCGTCCGAGGAGGTGCTGCCCGGCCGCCATCAGTCA
GAGGAGACCGACAGCGAGAGCGAGCGAGACCAGTCAAGGGTCGGCTTCGT
GGCGCACACGGCTCCCGCAACTACCCCTGGGCTGGGGACTGCGACGCCGC
CTGCAAAGACTTCGGCAGTTGCTCCTTTGGATGGGAGGGCTGCCACACCG
AGCGTTTTCCAGGGTGCCTCGTTGGAGGCGCCCACACCCGTCGCGTCGAT
AGGCGGCGGGAGTACACCCAGGGAGGTAATAAGCTCTCTGGGCAGTACTG
ATCCGAGTGCTTGGATAGAAGGCTCGGGCATCAATGTTCACGAGAGTCCG
GTACCGTCATCCTCTGATGCAGGGACCGGTGAAAATGCATCCACCCCTTC
TTTAGGTGGGAGGGAAGCACACCGACTCGAGTGGACAGCGGCAGGACCGA
CGGGGATTATGCCGGGACGTACACGTGGTGATGTGGCTAGGTTGCATGCT
GCCCACAGTGGGGCACTCATCTGCGCGGATATCGGGATCGAGGCTTCGGT
GCCTGAGGATTTCCGGAAACTGCAGTAC
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