mRNA_H-paniculata_contig4695.11687.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4695.11687.1
Unique NamemRNA_H-paniculata_contig4695.11687.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4695.11687.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 7.060e-19
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 1 
Query:  289 CGVGGCYCDKLRDNKRDVSSR*SCKYDLIGQTCETCFTFDEPQDITRMKLSFYKGDERTRSFKVKLDNNGVDDMEYEFTSTQTLD-YENYLLNSDETKELCLESTGLKNSEWFNPNEIKFYV 651
            C   GC     RD      SR SC   L    C+  + F+EPQDI R+K+ FYKGDER R+ K+K    G D  E   TS+ T   YE + +N+DETK L +E+  L + EW +  E++F V
Sbjct:   30 CDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLK----GSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRFMV 147
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BLAST of mRNA_H-paniculata_contig4695.11687.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 9.360e-15
Identity = 55/153 (35.95%), Postives = 82/153 (53.59%), Query Frame = 1 
Query:  226 VEAETKTSVAMTKCSSYDADN-------CGVGGCYCDKLRDN--KRDVSSR*SCKYDLI--GQTCETCFTFDEPQDITRMKLSFYKGDERTRSFKVKLDNNGVDDMEYEFTSTQTLDYENYLLNSDETKELCLESTGLKNSEWFNPNEIKFYV 651
            VEA +KT+V +T  +  D          CG  GC  D   D   + D  SR SC  +++  G  CE  FTFD PQDIT ++++F+KGDERTR+ KVK+  NG    EYE     T  + ++ +  +    + +ES G+   +W +  E++F V
Sbjct:  252 VEAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKI--NGDKIGEYESYPGST--FNSFGIQENGVHTVTMESVGIDRDDWISLLEVRFMV 400
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BLAST of mRNA_H-paniculata_contig4695.11687.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 5.270e-14
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:  301 GCYCDKLRDN--KRDVSSR*SCKYDLI--GQTCETCFTFDEPQDITRMKLSFYKGDERTRSFKVKLDNNGVDDMEYEFTSTQTLDYENYLLNSDETKELCLESTGLKNSEWFNPNEIKFYV 651
            GC  D   D   + D  SR SC  +++  G  CE  FTFD PQDIT ++++F+KGDERTR+ KVK+  NG    EYE     T  + ++ +  +    + +ES G+   +W +  E++F V
Sbjct:    2 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKI--NGDKIGEYESYPGST--FNSFGIQENGVHTVAMESVGIDADDWISLLEVRFMV 118
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BLAST of mRNA_H-paniculata_contig4695.11687.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.120e-9
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:  289 CGVGGCY----CDKLRDNKRDVSSR*SCKYDLI--GQTCETCFTFDEPQDITRMKLSFYKGDERTRSFKVKLDNNGVDDMEYEFTSTQTLDYENYLLNSDETKELCLESTGLKNSEWFNPNEIKFYV 651
            CG  GC      D + D   DV SR SC  D++  G  CE  FTF  PQ++ ++++ F+KG+ERTR+ KVK+  NG    E++        Y + +     T  + LES GL   EW +  E+ F V
Sbjct:  220 CGKYGCLPVLATDGITD---DVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKI--NGEKFGEFDSHPGSVTSYFDVIAYDVHT--VTLESLGLDTDEWISLLEVIFMV 339
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BLAST of mRNA_H-paniculata_contig4695.11687.1 vs. uniprot
Match: W9Y3G0_9EURO (Uncharacterized protein n=1 Tax=Capronia epimyces CBS 606.96 TaxID=1182542 RepID=W9Y3G0_9EURO)

HSP 1 Score: 60.8 bits (146), Expect = 4.580e-6
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   40 GSAYFGTEFGEECFCGPS-SDEPGRLGDATCSMLCSDNASGEICGDRNAISVYEIIQPPSASEVEAETKTSVAMT 261
            G AYFG E+G EC+CG S +       D  CSM C+ N+S  ICG  N +S Y+ + P S++     T TS+A T
Sbjct: 1329 GFAYFGVEYGRECYCGNSLAAGSATATDGRCSMTCAGNSS-TICGGPNGLSFYQFVLPSSSTSTSLSTTTSIAPT 1402
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BLAST of mRNA_H-paniculata_contig4695.11687.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.380e-5
Identity = 34/88 (38.64%), Postives = 43/88 (48.86%), Query Frame = 1 
Query:   43 SAYFGTEFGEECFCGPSSDEPGRLGDATCSMLCSDNASGEICGDRNAISVYEIIQPPSASEVEAETKTSVAMTKCSSYDADNCGVGGC 306
            SAY+GT++ EEC+CG    +    G   C M C  +A  EICG   AISVYE    P       +   S + + C   D D CG  GC
Sbjct:  142 SAYYGTQYSEECWCGAEGADYDANGAGVCDMPCGGDAD-EICGGFYAISVYENDGEPVEFSCSGDAGVS-SGSSCCEADCDTCGGSGC 227
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BLAST of mRNA_H-paniculata_contig4695.11687.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.460e-5
Identity = 39/95 (41.05%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:   46 AYFGTEFGEECFCGPSSDEPGRLGDAT-CSMLCSDNASGEICGDRNAISVYEIIQPPSASEVEAETKTSVAMTKCSSYDADNCGVGGCYCDKLRD 327
            AY+GT++GEEC+CG S  +   LG++T CS  CS +A GE CG  NA+SVY     P       ET T VA+      +  +    GCY D   D
Sbjct:   12 AYYGTQYGEECWCGNSGYD--TLGESTDCSFGCSGDA-GETCGGFNAMSVYSTGSDP------VETPTPVAV-----IEPTDPTYLGCYVDSQTD 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4695.11687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G122_ECTSI7.060e-1940.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8U9_9PHAE9.360e-1535.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCQ5_ECTSI5.270e-1437.19Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JFX1_9PHAE3.120e-936.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W9Y3G0_9EURO4.580e-642.67Uncharacterized protein n=1 Tax=Capronia epimyces ... [more]
A0A6H5JU45_9PHAE1.380e-538.64WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K223_9PHAE4.460e-541.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4695contigH-paniculata_contig4695:4322..7268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.5
Seed ortholog evalue7.4e-08
Seed eggNOG ortholog43228.XP_007732312.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WSC domain
EggNOG OGs20FSQ@147545,39RW7@33154,3MRMB@451870,3NW6X@4751,3QQIF@4890,KOG4157@1,KOG4157@2759
COG Functional cat.GO
Best tax levelChaetothyriomycetidae
Best eggNOG OGNA|NA|NA
Exons4
Model size1398
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4695.11687.1prot_H-paniculata_contig4695.11687.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4695 6299..7268 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.5688434-UTR-H-paniculata_contig4695:4321..50831622930397.5688434-UTR-H-paniculata_contig4695:4321..5083Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4695 4322..5083 -
1691481273.1972606-UTR-H-paniculata_contig4695:4321..50831691481273.1972606-UTR-H-paniculata_contig4695:4321..5083Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4695 4322..5083 -
1622930397.5820007-UTR-H-paniculata_contig4695:5569..57881622930397.5820007-UTR-H-paniculata_contig4695:5569..5788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4695 5570..5788 -
1691481273.2194955-UTR-H-paniculata_contig4695:5569..57881691481273.2194955-UTR-H-paniculata_contig4695:5569..5788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4695 5570..5788 -
1622930397.5963159-UTR-H-paniculata_contig4695:6235..62981622930397.5963159-UTR-H-paniculata_contig4695:6235..6298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4695 6236..6298 -
1691481273.2315116-UTR-H-paniculata_contig4695:6235..62981691481273.2315116-UTR-H-paniculata_contig4695:6235..6298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4695 6236..6298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.6099956-CDS-H-paniculata_contig4695:6298..64351622930397.6099956-CDS-H-paniculata_contig4695:6298..6435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4695 6299..6435 -
1691481273.2398286-CDS-H-paniculata_contig4695:6298..64351691481273.2398286-CDS-H-paniculata_contig4695:6298..6435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4695 6299..6435 -
1622930397.6245966-CDS-H-paniculata_contig4695:7051..72681622930397.6245966-CDS-H-paniculata_contig4695:7051..7268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4695 7052..7268 -
1691481273.2485826-CDS-H-paniculata_contig4695:7051..72681691481273.2485826-CDS-H-paniculata_contig4695:7051..7268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4695 7052..7268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4695.11687.1

>prot_H-paniculata_contig4695.11687.1 ID=prot_H-paniculata_contig4695.11687.1|Name=mRNA_H-paniculata_contig4695.11687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MSFFRRRARRCARGSAYFGTEFGEECFCGPSSDEPGRLGDATCSMLCSDN
ASGEICGDRNAISVYEIIQPPSASEVEAETKTSVAMTKCSSYDADNCGVG
GCYCDKLRDNKRDVSSR*
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mRNA from alignment at H-paniculata_contig4695:4322..7268-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4695.11687.1 ID=mRNA_H-paniculata_contig4695.11687.1|Name=mRNA_H-paniculata_contig4695.11687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2947bp|location=Sequence derived from alignment at H-paniculata_contig4695:4322..7268- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTTTTTCCGTCGTCGTGCGCGTCGTTGTGCGAGGGGATCAGCATA
TTTCGGCACTGAGTTCGGCGAGGAGTGCTTCTGCGGGCCTTCGTCGGACG
AACCCGGTCGTCTGGGTGACGCAACATGCAGCATGTTATGCAGTGATAAT
GCAAGCGGGGAGATTTGTGGCGACCGGAACGCGATCAGCGTGTACGAAAT
TATTCAACCTCCCTCAGGTGAATACACAGAGGGAATGCTTCTGGTCCTTT
TTACAAAGTAGGAGCTGTGGTCCTCACTCTAGAGACAGAGTGCGCACATA
GCATCGAGTGGTCACCGAGGAACTCTTGACTACTTGCAAGCCCGTTCACG
GCGCGGTCACAATGAGGTAGAAGTGCTGGAAACGCATCAACTTTGCGCGC
AGAACACTGAACGAATCTACATTGGCGGCTACTTCATGCTCTTGTGCGGT
ACGTGTTCTGGCGACGATAATGGGCCTAGCTTCTAGACCTCATCGAGCTG
CCTTAGACAGACGATCGAACTCTTGCCATTGTATTTCCGCCGTGCTGAGC
AAGTGGAGCAAAGGCTCCCCACTCGACCAAATCCGGGGTTGTAGAAATGT
ACTACGCCGGCTGTATATTTTATTCAGTAGATACTCGGGGCGGCAGAGTG
ACAGACATTACCGCCCGCGTCTCACGCATTACCGATGGTGGCCCTCGAAA
CGCGCTGGCTCGACGACATCAACCATGACTTGTACCCCGCCCTCCCCCAC
GTTCCTTCACGTTGGCGCACGTCGTGTCCCTAACCGTGTGTGTATACTAC
ACCAACCTTTTCGTGTGTTACCGATATCCTCAGCCTCTGAGGTCGAAGCT
GAGACCAAGACTAGTGTCGCAATGACCAAGTGCAGCTCCTACGACGCCGA
CAACTGTGGGGTCGGAGGCTGCTACTGCGACAAGCTCCGCGACAACAAGC
GCGATGTATCTTCGCGCTGATCCTGCAAGTACGATCTCATTGGACAGACC
TGCGAAACTTGCTTCACCTTCGACGAGCCTCAGGTAAGAGTCGCTGCGCC
TTGGCTTTTGTACGCGAGTAAGGCCACGTGTGGTACATGCCATACAGCCG
TAAGTAAACGTACACGTGTCTACCATGTGGGTGAAAATTGGAGTTGATGC
CGGATCCGAGCAGTGCGATGCGTGCTGTACCCAGGTGTATCAGCGGATTC
TCGCCCAATGTGGGCCCATTCTGCCTATTTTCCTGCAGCTCTGTTATATC
CGCGCTGTGCTGGGCCTTGTAGTTTTGTGATTCGAATCAGTGAATACTGA
AAGTATAGTACGTCTCGGTTACTTTTGTAACGGCGCCGTTTCCGCACCTC
GCTCCTCTCTCATATAGTAGAAGGTGGAGATTGAACCAAAACGAGAGCTA
TACTTCAGAATAATCTCCCGAGTCTTATTATTTATCGTGCGGTAACCGTC
GTCTGGTTCGCTACCCAATAACCACACTAGGACATTACGAGGATGAAGCT
GTCCTTCTACAAGGGCGACGAGCGCACGAGATCGTTCAAGGTCAAGCTAG
ACAACAACGGCGTCGACGATATGGAATACGAATTTACCTCTACACAAACC
CTTGACTACGAAAACTACTTGCTGAATAGCGATGAAACCAAGGAGCTGTG
CCTGGAGTCGACCGGTCTCAAAAACAGTGAATGGTTCAATCCCAATGAGG
TACGCCGAATCCCGTCGATGATTCACATTTGGAGATCATATCAGTTTGTC
GTTTCCGACCCCAGACGAAATTCGACATCATCCAATCACCCCCTGATATA
CCGGATTGGGCAGGTGCGGTTCATATTGAAGGGGCGCCGTGCACTGCAGT
TTTGGTTTTCTATGGTTGCTGGCCCTGAAGTAGAGTAGCAGCTGTGTATC
CCATAACCAGGCGGTAGCTTGCGCATAATAGTCGTTCATAAATGTTATGT
ACCAAGATTGTCTTACGCATGGTACTTCACCGATCGAGATACACGAGAAC
TAGCTTTCGGTGTGCCATGCGTACATAGGAGTGCGTTTGGCGGACAGTAA
TACCTCGTGATATAGGCAAATCTATACTACCGGCAGGTGTAAATGTGCGT
ATATTGAAAAGATCCTTGAAACGATGGTAAATTGATAAATTCCTCGGTTT
CTCGCGTGTCGGCGTTGTGTGTACTTGGTCGACAGATTAAGTTCTATGTG
AACGCCTAATCGTAGCGGCTACCGCAACATCAACAACGGCCCTCGAACGA
GCTGCGTTCAAGGCGTGGGACTTCCCCGCAGCGGATAGAACAATGGAGCG
GTTGGTCGTCCTCCTTTTTCATTTGTTGGCATTATCATCACGACCTCGTA
GCACCTTTGGCACAATACTATTCGTTTAGGGTGTGCGAAGATCTCAGGGT
GGTGATGAGCACTGGCGCTGGGGCATAAGGCGAAGCCAGCTGACTATTCC
GGACAACGTTGTCGGCGGTGCGGCAGTAAATTCTTCCGTATTTCCATTCG
GAACATGCAACATATGGATGTGCTGGGGCAGGAGGACATTGCCTCCATAG
TGGACGTTCGGCATAGTTTGATCTCTCCGGCGCACTACACCATCTTCGCA
GTACTGCCATGTACCATTATTCATGTGCGGAGTAGAAGTTTCGAATCTTC
TGCCATAGGATTGTAGTTATGTACCAATGTTTATTCCATCAGTTTCCAGT
AGTATTGTAGACCAAAAAAGAGCATTCAGTTTGTGCACTACTGTAGGCGT
TCTTGTAGTGGTGCTGTTTGCGGTGTTTGTTGCTCACGTGATGCCTACCG
ATCAACTTACTTATGTTTCTATTCAGTTGCACACTGCGGTCGTATGTTGC
GGTCTTGCTTGTTGTCGACGTTGGTACCGGAGGAGGAGGGACTGTGAAAT
CCACATATAAATCGTGCTATTTAGATTCAACGAAAATAAAGAATTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig4695:4322..7268-

>mRNA_H-paniculata_contig4695.11687.1 ID=mRNA_H-paniculata_contig4695.11687.1|Name=mRNA_H-paniculata_contig4695.11687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig4695:4322..7268- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTTTTTCCGTCGTCGTGCGCGTCGTTGTGCGAGGGGATCAGCATA
TTTCGGCACTGAGTTCGGCGAGGAGTGCTTCTGCGGGCCTTCGTCGGACG
AACCCGGTCGTCTGGGTGACGCAACATGCAGCATGTTATGCAGTGATAAT
GCAAGCGGGGAGATTTGTGGCGACCGGAACGCGATCAGCGTGTACGAAAT
TATTCAACCTCCCTCAGATGTCGTTTTTCCGTCGTCGTGCGCGTCGTTGT
GCGAGGGGATCAGCATATTTCGGCACTGAGTTCGGCGAGGAGTGCTTCTG
CGGGCCTTCGTCGGACGAACCCGGTCGTCTGGGTGACGCAACATGCAGCA
TGTTATGCAGTGATAATGCAAGCGGGGAGATTTGTGGCGACCGGAACGCG
ATCAGCGTGTACGAAATTATTCAACCTCCCTCAGCCTCTGAGGTCGAAGC
TGAGACCAAGACTAGTGTCGCAATGACCAAGTGCAGCTCCTACGACGCCG
ACAACTGTGGGGTCGGAGGCTGCTACTGCGACAAGCTCCGCGACAACAAG
CGCGATGTATCTTCGCGCTGACCTCTGAGGTCGAAGCTGAGACCAAGACT
AGTGTCGCAATGACCAAGTGCAGCTCCTACGACGCCGACAACTGTGGGGT
CGGAGGCTGCTACTGCGACAAGCTCCGCGACAACAAGCGCGATGTATCTT
CGCGCTGA
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