mRNA_H-paniculata_contig46940.11685.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46940.11685.1
Unique NamemRNA_H-paniculata_contig46940.11685.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: D1J766_ECTSI (50S ribosomal protein L20, chloroplastic n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J766_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.090e-66
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 342
            MVRVKRGNVARKRRNKILKLAKGFCG+HSSLFRIANQQVIKSLLYAY+GRKKKKRVFRQLWITRINAAVK+YNLKYN+FIHNLKKSKI+LNRKMLSQLAILDPPAFSALV ATK
Sbjct:    1 MVRVKRGNVARKRRNKILKLAKGFCGSHSSLFRIANQQVIKSLLYAYSGRKKKKRVFRQLWITRINAAVKHYNLKYNEFIHNLKKSKIILNRKMLSQLAILDPPAFSALVFATK 114
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A0R6M3F2_UNDPI (50S ribosomal protein L20, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M3F2_UNDPI)

HSP 1 Score: 191 bits (485), Expect = 4.800e-61
Identity = 99/114 (86.84%), Postives = 108/114 (94.74%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 342
            MVRVKRGNVAR RRNKILKLAKGFCGAHSSLFR+ANQQVIKSL+YAY GRK+KKR+FRQLWITRINAAV NYNLKY+KFIHNLK+SKILLNRKMLSQLAILDP AFS++V  T+
Sbjct:    1 MVRVKRGNVARNRRNKILKLAKGFCGAHSSLFRVANQQVIKSLIYAYRGRKEKKRIFRQLWITRINAAVSNYNLKYSKFIHNLKRSKILLNRKMLSQLAILDPSAFSSIVKLTQ 114
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A8F0JZA2_9PHAE (50S ribosomal protein L20 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JZA2_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 7.960e-60
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 342
            MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSL+YAY GRK+KKR+FRQLWITRINAA   YNL Y++FIHNLK++K+LLNRKMLSQLAILDPPAFS +V ATK
Sbjct:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLIYAYRGRKEKKRMFRQLWITRINAAASYYNLNYSRFIHNLKQAKVLLNRKMLSQLAILDPPAFSFIVEATK 114
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A8F0FB19_9PHAE (50S ribosomal protein L20 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB19_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.320e-58
Identity = 96/114 (84.21%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 342
            MVRVKRGNVAR RRNKIL+LAKGFCGAHSSLFRIANQQVIKSL+Y+Y GRK+KKR+FRQLWITRINAA + YNLKY++FIHNLK+SK+LLNRKMLSQLAILDP AFS +V ATK
Sbjct:    1 MVRVKRGNVARNRRNKILRLAKGFCGAHSSLFRIANQQVIKSLVYSYIGRKEKKRIFRQLWITRINAAARQYNLKYSRFIHNLKRSKVLLNRKMLSQLAILDPSAFSYIVEATK 114
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: D1GJI6_FUCVE (50S ribosomal protein L20, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJI6_FUCVE)

HSP 1 Score: 170 bits (430), Expect = 1.160e-52
Identity = 90/114 (78.95%), Postives = 104/114 (91.23%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 342
            MVRVKRGNVARKRRNKILKLAKGF GA SSLFRIANQQVIKSL+Y+Y GRK+KKR+FR+LWITRIN++ + YN+KYN+FI+ LK+SKILLNRKMLSQLAILDP AFS ++  TK
Sbjct:    1 MVRVKRGNVARKRRNKILKLAKGFNGAQSSLFRIANQQVIKSLVYSYIGRKEKKRIFRKLWITRINSSTRQYNIKYNRFIYKLKQSKILLNRKMLSQLAILDPLAFSNIIEITK 114
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A8E5XRD5_9PHAE (50S ribosomal protein L20, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.720e-52
Identity = 87/110 (79.09%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALV 330
            MVR+KRGNVARKRR KIL LAKGFCG+HSSLFR+ANQQV+KSLLYAY GRK+KKR+FRQLWITRIN AV+NY   Y+KF H+LK S ILLNRKMLSQLAI+DP  FS+LV
Sbjct:    1 MVRIKRGNVARKRRKKILNLAKGFCGSHSSLFRVANQQVLKSLLYAYIGRKEKKRMFRQLWITRINGAVRNYGTNYSKFTHSLKVSNILLNRKMLSQLAIIDPSGFSSLV 110
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A8F0JXR7_9PHAE (50S ribosomal protein L20 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXR7_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.270e-51
Identity = 85/116 (73.28%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATKIN 348
            MVRVKRGNVARKRRNKIL  AKGFCGAHSS FR+ANQQVIKS LY Y GRKKKKR+FRQLWITRINAA + YN++Y++FI+ +K+++ILLNRKMLSQLAILDP +FS++V+ + + 
Sbjct:    1 MVRVKRGNVARKRRNKILNFAKGFCGAHSSSFRVANQQVIKSFLYGYIGRKKKKRIFRQLWITRINAASRQYNIRYSRFIYFMKQARILLNRKMLSQLAILDPFSFSSMVVVSSLT 116
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A1N7TJI7_9PHAE (50S ribosomal protein L20 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI7_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 7.830e-51
Identity = 89/114 (78.07%), Postives = 101/114 (88.60%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 342
            MVRVKRGNVARKRR KILKLA+GF G  SSLFRIANQQV+KSL+YAY GRKKKKRVFR+LWITRIN++ + YN+KY+ FI+ LK+SKILLNRKMLSQLAILDP AFS L+  TK
Sbjct:    1 MVRVKRGNVARKRRKKILKLAQGFRGPQSSLFRIANQQVMKSLVYAYIGRKKKKRVFRKLWITRINSSTRQYNMKYSHFIYKLKQSKILLNRKMLSQLAILDPSAFSNLIKVTK 114
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BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A7S6U9T3_9STRA (50S ribosomal protein L20, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9T3_9STRA)

HSP 1 Score: 162 bits (411), Expect = 9.130e-50
Identity = 84/110 (76.36%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALV 330
            MVRVKRGNVARKRR KI+KLAKGFCGAHS LFRIANQQV+KSL+Y+Y GRK+KKR FRQLWI RIN+ V+N+N KY++FIH+LK S IL+NRKMLSQLAI DP +FS L+
Sbjct:    1 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLL 110
[Close]
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Match: A0A2I4Q2E5_9PHAE (50S ribosomal protein L20, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.150e-48
Identity = 87/114 (76.32%), Postives = 97/114 (85.09%), Query Frame = 1 
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGRKKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAILDPPAFSALVLATK 342
            MVRVKRGN+ARKRRNKILK AKGF GAHS+ FRIANQQV+KSL Y Y GRK KKRVFRQLWI RINAAVK Y+L Y++FI  LK++ ILLNRKMLSQLAILDP AFS+L+   K
Sbjct:    1 MVRVKRGNIARKRRNKILKRAKGFFGAHSNSFRIANQQVLKSLRYEYVGRKTKKRVFRQLWIIRINAAVKKYDLCYSQFIFKLKQASILLNRKMLSQLAILDPKAFSSLIAIVK 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46940.11685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J766_ECTSI1.090e-6694.7450S ribosomal protein L20, chloroplastic n=9 Tax=E... [more]
A0A0R6M3F2_UNDPI4.800e-6186.8450S ribosomal protein L20, chloroplastic n=26 Tax=... [more]
A0A8F0JZA2_9PHAE7.960e-6085.9650S ribosomal protein L20 n=2 Tax=Laminariales Tax... [more]
A0A8F0FB19_9PHAE1.320e-5884.2150S ribosomal protein L20 n=1 Tax=Desmarestia acul... [more]
D1GJI6_FUCVE1.160e-5278.9550S ribosomal protein L20, chloroplastic n=3 Tax=F... [more]
A0A8E5XRD5_9PHAE6.720e-5279.0950S ribosomal protein L20, chloroplastic n=1 Tax=I... [more]
A0A8F0JXR7_9PHAE1.270e-5173.2850S ribosomal protein L20 n=1 Tax=Protohalopteris ... [more]
A0A1N7TJI7_9PHAE7.830e-5178.0750S ribosomal protein L20 n=1 Tax=Coccophora langs... [more]
A0A7S6U9T3_9STRA9.130e-5076.3650S ribosomal protein L20, chloroplastic n=1 Tax=S... [more]
A0A2I4Q2E5_9PHAE2.150e-4876.3250S ribosomal protein L20, chloroplastic n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46940contigH-paniculata_contig46940:226..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue3.1e-51
Seed eggNOG ortholog2880.D1J766
Preferred namerpl20
KEGG koko:K02887
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0031967,GO:0031975,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0292@1,KOG4707@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.4393413-CDS-H-paniculata_contig46940:225..5761622930397.4393413-CDS-H-paniculata_contig46940:225..576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46940 226..576 +
1691481273.1517901-CDS-H-paniculata_contig46940:225..5761691481273.1517901-CDS-H-paniculata_contig46940:225..576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46940 226..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46940.11685.1prot_H-paniculata_contig46940.11685.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46940 226..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46940.11685.1

>prot_H-paniculata_contig46940.11685.1 ID=prot_H-paniculata_contig46940.11685.1|Name=mRNA_H-paniculata_contig46940.11685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYNGR
KKKKRVFRQLWITRINAAVKNYNLKYNKFIHNLKKSKILLNRKMLSQLAI
LDPPAFSALVLATKIN*
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mRNA from alignment at H-paniculata_contig46940:226..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46940.11685.1 ID=mRNA_H-paniculata_contig46940.11685.1|Name=mRNA_H-paniculata_contig46940.11685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig46940:226..576+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTAGAGTTAAACGTGGTAATGTTGCTAGGAAGCGTAGAAATAAAAT
TTTAAAACTTGCAAAAGGGTTTTGTGGGGCTCATTCAAGCTTATTCCGTA
TTGCAAACCAACAAGTAATAAAAAGTTTATTATATGCGTATAATGGAAGA
AAAAAGAAAAAAAGAGTATTCCGACAGTTATGGATCACAAGAATTAATGC
GGCGGTTAAAAATTATAACTTAAAGTATAATAAGTTTATACATAACTTAA
AAAAATCTAAAATTCTTTTAAACCGTAAAATGTTATCACAATTAGCGATT
TTAGATCCACCAGCGTTCTCAGCTTTAGTTCTAGCAACGAAGATAAACTA
A
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Coding sequence (CDS) from alignment at H-paniculata_contig46940:226..576+

>mRNA_H-paniculata_contig46940.11685.1 ID=mRNA_H-paniculata_contig46940.11685.1|Name=mRNA_H-paniculata_contig46940.11685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig46940:226..576+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTAGAGTTAAACGTGGTAATGTTGCTAGGAAGCGTAGAAATAAAAT
TTTAAAACTTGCAAAAGGGTTTTGTGGGGCTCATTCAAGCTTATTCCGTA
TTGCAAACCAACAAGTAATAAAAAGTTTATTATATGCGTATAATGGAAGA
AAAAAGAAAAAAAGAGTATTCCGACAGTTATGGATCACAAGAATTAATGC
GGCGGTTAAAAATTATAACTTAAAGTATAATAAGTTTATACATAACTTAA
AAAAATCTAAAATTCTTTTAAACCGTAAAATGTTATCACAATTAGCGATT
TTAGATCCACCAGCGTTCTCAGCTTTAGTTCTAGCAACGAAGATAAACTA
AATGGTTAGAGTTAAACGTGGTAATGTTGCTAGGAAGCGTAGAAATAAAA
TTTTAAAACTTGCAAAAGGGTTTTGTGGGGCTCATTCAAGCTTATTCCGT
ATTGCAAACCAACAAGTAATAAAAAGTTTATTATATGCGTATAATGGAAG
AAAAAAGAAAAAAAGAGTATTCCGACAGTTATGGATCACAAGAATTAATG
CGGCGGTTAAAAATTATAACTTAAAGTATAATAAGTTTATACATAACTTA
AAAAAATCTAAAATTCTTTTAAACCGTAAAATGTTATCACAATTAGCGAT
TTTAGATCCACCAGCGTTCTCAGCTTTAGTTCTAGCAACGAAGATAAACT
AA
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