mRNA_H-paniculata_contig469.11678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig469.11678.1
Unique NamemRNA_H-paniculata_contig469.11678.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: D7FJ86_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ86_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 1.370e-58
Identity = 176/375 (46.93%), Postives = 217/375 (57.87%), Query Frame = 1 
Query:   10 AASEGGGGS------APTRNSRSFHGLQNILPQAASRLSRRERGFTAAIAGTGSREGRGRFSMSSERQQRAGSEKDASPRQSGG----SERASKNERYDRGLLQGDSGTHSVTDSYDLNSYGSYASDDEDGNHEVGLSIDGDDEEEPRGGI-----LDPS-------LGSTPSPEILLAYGSEHGVTLPAFSLQGGSSSSHGVRSSSHNMSIXXXXXXXXXXXXXXCHS--------GLGGRRDVASRQGSAVGGMTRVLSWHGGMSPSDAGLEDEE------EECEVGVGSEEDMVARKMEAGVLGTTS-------QSATTCYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVLRLSRI 1005
            AA + GGGS       P R+SRSFH LQ+  P A   + R  + FTAA+ G+ SREG  RFS+SS RQ  AG+EK+ SPR  G     S+R  +++R+D+ LL GDSGTHSVTDSYDLNS+GS+   DED +HEVGLSIDGD+E+EPR G      +D S         +T  PEILL +GS HG    AFSL GGS S HG+   S     XXXXXXXXXXXXX   S        G   RR   S      GGM R LSW G +S +  G ++ +       + E G G     VA    +G L           +  +TCYICC R ADAV+MECGH G+C+ CA  LA +PP +CPVCR  IQ+V +L  I
Sbjct:  467 AAIDDGGGSEERGERVPQRSSRSFHVLQDCFPHARGAVRRGGQRFTAAVTGSSSREGHERFSVSSGRQL-AGAEKEGSPRPRGEDGATSKRTPEDDRHDQCLLPGDSGTHSVTDSYDLNSFGSFVDSDED-SHEVGLSIDGDEEDEPRDGXXXXXAIDGSSFHESLPATTTEPPEILLGFGSAHGAA--AFSLHGGSGSGHGLCHGSXXXXXXXXXXXXXXXXXXLATSRHRWSAERGTSSRRGAGSSIHGGAGGMPRRLSWPGELSLASVGGDEVDVAAVTASDAEAGRGG----VATGGSSGPLXXXXXXXXXXXREHSTCYICCERRADAVMMECGHGGVCFTCATTLADSPPHLCPVCRKVIQEVFKLHEI 833
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: A0A7S3JUI3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUI3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.050e-11
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:  835 SATTCYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVLRLS 999
            +++ CYIC + P DAVLMECGH+G+C++CAQ LAV  P  CP+CR  I  VL+LS
Sbjct:  426 NSSLCYICYVAPRDAVLMECGHAGVCFSCAQKLAVRHPRSCPICRQPISTVLKLS 480
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: A0A7S2XWW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWW7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.160e-10
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  841 TTCYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVLRLSRIVTVRSGGSLV 1035
            T+C +C    ++AVL+ECGHSG+C+ CAQ LA   P  CP+CR  I Q+LR+   +   SG + V
Sbjct:   31 TSCLVCWNARSNAVLLECGHSGLCFPCAQALAQRYPQQCPMCRQNIVQILRIEPEIAGTSGQTRV 95
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: A0A7S4F120_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F120_CHRCT)

HSP 1 Score: 69.7 bits (169), Expect = 1.290e-9
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  829 SQSATTCYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVLRLS 999
            S  ++TC+ICC+  ADAVL++CGH G+CYACA+      P +CP+CR  I+ V R++
Sbjct:  239 SFDSSTCWICCLSTADAVLLDCGHGGLCYACAERCWRRSPHICPLCRASIKVVARVA 295
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: A0A7S0I1C8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I1C8_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 1.660e-9
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:  844 TCYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVLRL 996
            TC+ICC  P DAVLMECGH GIC  CA   A   P +CP+CR  I  V+++
Sbjct:   45 TCWICCSGPCDAVLMECGHGGICMDCATQCAKKRPPLCPLCRARILVVVKV 95
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: A0A7S4BGL3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BGL3_CHRCT)

HSP 1 Score: 69.7 bits (169), Expect = 1.770e-9
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  829 SQSATTCYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVLRLS 999
            S  ++TC+ICC+  ADAVL++CGH G+CYACA+      P +CP+CR  I+ V R++
Sbjct:  289 SFDSSTCWICCLSTADAVLLDCGHGGLCYACAERCWRRSPHICPLCRASIKVVARVA 345
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: A0A7S4BGL5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BGL5_CHRCT)

HSP 1 Score: 69.7 bits (169), Expect = 3.020e-9
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  829 SQSATTCYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVLRLS 999
            S  ++TC+ICC+  ADAVL++CGH G+CYACA+      P +CP+CR  I+ V R++
Sbjct:  527 SFDSSTCWICCLSTADAVLLDCGHGGLCYACAERCWRRSPHICPLCRASIKVVARVA 583
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: A0A7S3ZTM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTM6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.970e-8
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:  847 CYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVLRLSR 1002
            CY+CC+   +AV+MECGH GIC+ C + LA   P  CP+CR  I  VLR+ R
Sbjct:  540 CYVCCVSRKNAVIMECGHGGICFECGKSLASRHPRNCPICRAPISAVLRVER 591
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: A0A8J5XPB8_DIALT (RING-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPB8_DIALT)

HSP 1 Score: 65.1 bits (157), Expect = 1.110e-7
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  844 TCYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVLRLSRIVTVRSGGSLV 1035
            +C+ICC  P DAV +ECGH G+C ACA+        +CP+CR  I QV+ +S +     G  +V
Sbjct:  818 SCWICCEGPRDAVFLECGHGGVCLACARRCLKKKGRLCPMCRQHIDQVVHISVLRVAYEGARIV 881
[Close]
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Match: A0A7S4E5I6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5I6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.590e-7
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:  835 SATTCYICCMRPADAVLMECGHSGICYACAQHLAVAPPSVCPVCRHEIQQVL 990
            +A  CYICC RP D+VL+ CGHSG CYACA    VA   +CP CR  + Q++
Sbjct:  163 AAGLCYICCDRPMDSVLLPCGHSGACYACAVE-NVARTELCPCCRGAVDQIV 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig469.11678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ86_ECTSI1.370e-5846.93RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S3JUI3_9STRA2.050e-1158.18Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2XWW7_9STRA6.160e-1046.15Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4F120_CHRCT1.290e-949.12Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0I1C8_9EUKA1.660e-954.90Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S4BGL3_CHRCT1.770e-949.12Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4BGL5_CHRCT3.020e-949.12Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3ZTM6_9STRA3.970e-851.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J5XPB8_DIALT1.110e-742.19RING-type domain-containing protein n=1 Tax=Diacro... [more]
A0A7S4E5I6_9STRA1.590e-753.85Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig469contigH-paniculata_contig469:6930..13064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTransmembrane Fragile-X-F-associated protein
Ec32 orthologEc-12_008460.1
Exons4
Model size1146
Cds size1143
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig469.11678.1prot_H-paniculata_contig469.11678.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig469 6930..13063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930396.3982658-CDS-H-paniculata_contig469:6929..70881622930396.3982658-CDS-H-paniculata_contig469:6929..7088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig469 6930..7088 +
1691481272.661982-CDS-H-paniculata_contig469:6929..70881691481272.661982-CDS-H-paniculata_contig469:6929..7088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig469 6930..7088 +
1622930396.4322274-CDS-H-paniculata_contig469:10315..104171622930396.4322274-CDS-H-paniculata_contig469:10315..10417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig469 10316..10417 +
1691481272.673697-CDS-H-paniculata_contig469:10315..104171691481272.673697-CDS-H-paniculata_contig469:10315..10417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig469 10316..10417 +
1622930396.4538767-CDS-H-paniculata_contig469:11229..113491622930396.4538767-CDS-H-paniculata_contig469:11229..11349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig469 11230..11349 +
1691481272.6835945-CDS-H-paniculata_contig469:11229..113491691481272.6835945-CDS-H-paniculata_contig469:11229..11349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig469 11230..11349 +
1622930396.477595-CDS-H-paniculata_contig469:12301..130631622930396.477595-CDS-H-paniculata_contig469:12301..13063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig469 12302..13063 +
1691481272.6931326-CDS-H-paniculata_contig469:12301..130631691481272.6931326-CDS-H-paniculata_contig469:12301..13063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig469 12302..13063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig469.11678.1

>prot_H-paniculata_contig469.11678.1 ID=prot_H-paniculata_contig469.11678.1|Name=mRNA_H-paniculata_contig469.11678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=381bp
TATAASEGGGGSAPTRNSRSFHGLQNILPQAASRLSRRERGFTAAIAGTG
SREGRGRFSMSSERQQRAGSEKDASPRQSGGSERASKNERYDRGLLQGDS
GTHSVTDSYDLNSYGSYASDDEDGNHEVGLSIDGDDEEEPRGGILDPSLG
STPSPEILLAYGSEHGVTLPAFSLQGGSSSSHGVRSSSHNMSIHGHSSHG
FSGHGYSCHSGLGGRRDVASRQGSAVGGMTRVLSWHGGMSPSDAGLEDEE
EECEVGVGSEEDMVARKMEAGVLGTTSQSATTCYICCMRPADAVLMECGH
SGICYACAQHLAVAPPSVCPVCRHEIQQVLRLSRIVTVRSGGSLVGGSGG
GGGGNVSGGEYTSGDELSGGEGSVVAIASSG
back to top

mRNA from alignment at H-paniculata_contig469:6930..13064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig469.11678.1 ID=mRNA_H-paniculata_contig469.11678.1|Name=mRNA_H-paniculata_contig469.11678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6135bp|location=Sequence derived from alignment at H-paniculata_contig469:6930..13064+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGCGACAGCGGCGTCGGAGGGGGGGGGGGGCAGCGCGCCGACCCGAAA
TTCCCGGAGCTTTCACGGACTGCAGAACATTCTGCCGCAAGCCGCGAGCA
GATTGTCTCGTAGAGAGCGGGGGTTCACGGCAGCTATTGCGGGGACGGGG
TCGCGAGAGGTGGGTTCATGGGTCTGGGTGGTGAAGTTATTGCGCTTGTC
TTGTTGATGTGGACTGTGTTTGGCTGAAGGGATTGCCCCCTATTGATGGA
CCACTCAGCCAGGGCTGACTGAGTGGTCTGGTGGGTGATTTTTTCTAACA
AAAAGGTTGGGCGAGGTGCTGGGTGGAGTGGAAGGGAGTCCTGAGGGTGG
AGTAGTGTGGCAAGTATGTACATGTATGTACTTCCAGTGTGCCATAAGTA
GAGTTGGTTGATTTTATAGAGGCACGTAACCATCTCCGTTATTTTAGATA
ATATCCTACACGTTTTTGGGTTTGATCCTCCAAAACTTTCACGTAAGTTG
GCGAAATTCGTCGGGAGCGCGAAAAAAATATGTCGGCCGAAAAAAGGCCA
TGTTTTTGTTCTTTTTCGTATATTCCCATTTGAAAAACGTGATAATCGAA
ATAAACTTGGAAACTGTCAATTAGCCCAACCTGAAGTGGGCATTAGTCCT
GATACACCAATCGGAATGCACATCGGAATAACGCACATGGATCTGTTAGT
TTTCAGCTTGTCAATAATTCCAACCTCAGCCTCTAAACAGTCGTAGATCT
GGAGATGTAATCTGCCAAATATCACCGACTTCGTTTACAGAGGAATGATC
TATCTATATCTATTTTTATTTGTTTAGCATAACGCTTCGAGCACCATGGT
CGACATCTCGGGTTCTGTCACGTATTATCACTAGGAAAGCCTAATAAATT
CATCAAGTTTAGAGACGCTTTTTTTTTTTTTTTTTCAGTACTTGTAATAC
AAGAAATTTTCGAGTCCGTTTGGTGGGAAAATATTGTCACTCGGTGAACG
TTTTTTTTCTGGCGATATAAGTCATGATTTTCGTGTAGTACTACAGCTAC
AAAACACAGTTATTTGATAGGGTATTTGCCCGAGCACTATGTAGGGGGGA
GTGTTTTTTTTCTCTCGAGCAGGACATAACAAACCGTGTAAATTACGCCG
GGCAGCCAGAATTAAGGTCGTGCCCGAGGATAGACCTTGATGGATGGATG
GAAAAATTGATCGATTTATCTGCGGTTGACTGATCTCGTTGATTGAATAT
TCGACTCAAATGAACAGTAGTTATCAATCTTCTGAGACATTTAACAACCG
ATCCTCGAAATTGAGGATCAATCTTCAATTCGAGGATCTTTTTTTTTGAC
ATGCCAAACTCAAAAAAACGAGGGGCGGAAAATTATGCTTCTCCTCGTTA
GCTGTCGCACACGCCTACCTTCGATGGAATTGGACAAGCCAATCATCGAG
ATAATGAGAAATCAAGAAAAACCGCGAAAAACCGTTACCGTCGACATAGA
TATTTTTGTATTTTGCCTATATCTTGGCAGCTCTTGGCTCGATTAAAAAA
TCATCGATGGCCCGTGAATGCTGACGTCATGCGTTTTCAAACAGTGTTGG
ACTTTTTAGCATGGTTTAGCAATCGTTGTTGGTAAAGTTACCAAAAACCG
AGTCGTCCTTAAATACAATAATCGATCTAGAATTTCGCGGTTGATGCAGG
TTGCGCGTGGAAGGTGGTTGATATAGGTTGATCAAGTTGGGTTTTGTACG
TGAACCCTCTTTCTCTCTCCATTAGGTCACAAGTTGTGTCTTGAAGTCTG
GTATTACAAACCTATTCCGAAGTTATGATGGCCATGGCCCACCTGCACCT
ACCACACCCTATTATTCGAATGCTTGAAAGGAAGCACGAACGAACGATTA
CCAGGTAGCGAGCGTCCACACATTGGGCTCTTTTGTACCGAACTGGCAAG
CACCTTGCTTTTTCTATTGGGTACGTGCGCACGATGCCATCAAGTCACGC
GTTCGTCAGAACTTGCGGGCCACCTTATGTGCAAGCATGGCTGTTACCCA
AACTGGTATTGTACGGTTACGAAATCCGCTTTGTATCGTGTTGTTTACCA
ACCTTATTTATGTGAGTTCGTATCGCCACGGCCCCTTATACCTAGCCTAT
AGCCAATTTTAGGCGGTACAAGACATTTACGGGACCAAGTTAACATGAGA
TGAGATATCATATATTTACGTCTGTGAGAATGAGGGCAATAGTTCTCGAT
GGATGTTGGGTGACAATTACAGTTTTTAAGGTAACCTTTGGTCGAGTCTT
ACTATTGGAGGACTTGAGTCTAGCGGTAATCAGGACCCGACCGGCTCGCG
GCTAGGTGTTGCAATCTCCTTCCCTATAGGTGTTCTGAACTTGCTGCTCT
TATCCCCCACCGTAGCTGCGGCTTTTGGTTGAGCGCTTGAATTTTTGGTG
TGTCGATATGCTCGCGTGAGAACATATGACCTTCAGGGCGAGAAACAGAC
AAGTTATATATCGGTGTCGCTAATGTGAAGATTAGGTTAAATGCTCTTAA
CAACAGACCTTGTGTGATTATTACCCACCCTTTTAAGGTGGCCAACACAC
ATGCGCGTATTATATCTGCGTGTGCGTATGGATATCGGGTTCCAGTAGTT
GCATGGTATGATGGCATTACGGTATATCGTTTCGAACTGATTGGGGAGTT
CACTTATTGAGTGGGATTTTGGAAGCTTCGCTGCGTTTAATGGTGCAATT
TACGGTACTGGACGGGATATTTTCTTCTTCATCACAACTCGACGTTTTTT
TGTTTTTTTTTCAATTTCAGAAACCACACGAAGCGTTTGTGTGTAGTCAT
TAGGGCTCTCTTCAGTAAATCGGTTAGTATTTTAATCGGTTGAATTCAAG
TACCCGATGAAAATGTAAATTGAGTTTAGATGGACTGTTTCTCGCCTGCT
GTATTGTGTTTTCTTCCAATTCGTTTTTCGCAGACGCGTAGCTGTGTACA
TCCGCTTGTGCTGTGAGGTATTTTTTCGTGTTGGTTCAATGTGGTTGAAC
ATATTTCTTAACTGAATAAATGCCGCACAAGAGTAAACAAATTAGGTCCG
GTTATCGGGGGCTGCAAATGTAGATAGTTTTTGTTGGTGACGAATTCTGT
ACTTGATACATCATATTTGCTCTTTCGGACCGACAGAGGGTTGTTTGCCT
GACGGTCGTCTAAACCTGGCCACCCCTGCACACTGCTGGTGTGTTTTTAC
CTGTATTTTTATGTTGACCGCCCCCCCTGCTCCCCTTTACTTTTTTTTGT
ATATGACTGATTCTGATGTATATGTTATATGCGCGATTACGCCATTTGTT
GTGTCGGTGTTTATTTTCTTTTTTTTTTCTTGGCAGGGTCGAGGGAGATT
TTCGATGTCGTCGGAACGACAGCAGAGAGCTGGGTCGGAAAAAGACGCGT
CTCCGAGGCAAAGCGGAGGGAGTGAGCGGGCGTCCAAGGTACGTGTTCTT
GAAGTATGTGCTCGGTTCTGCATTGTGTTTTAACTCGTCAATATATTACA
CGCAACAGATTACGGAGGTTGTTGAGCAACTTCAAAACGAATGCCATCAA
TATAGATGCCCACACAGAATAGAGCTAGGTATCCACAGTGCTGCTGTGGA
CTCACATCGGAGCTGCTATTGATATCATCAAAATTTCAAAATTGATCTAG
ATTAGAGGCAAGCCCGCCAAATCGCCCCCTTACTCGGTATAGCTTCGGCG
ATGGCATACACTGTTGTGCGCCGTAAGACCCCGCTTTTAACGAGCAAAAT
GACGTAGGTAGTATTTGGTGTATTCAATAGTTGGTATTTAGTCATCCCAA
TTCGTGCATTATGACATAGGTAATGCTTAGTTCATATTGTGAATACATCG
CAAATCACGACGCGCGCGAGGGACCTTGTGTGTTGAGTTTTTCAACCCCC
CCCCCATCCTCCTTACCCGTGTTTTTGTTTTTGGATCGAAATTTGTCACC
CAGTCCCTCCTTCGGCCCTTAGTGTACACTTAGATAGACTAGCGAAGAAC
TAGCTGTACACATGTGTTGCGGTCGAGCCCATTGCTACCGTGGGCTATTG
TAAAACGAGCTTTGTATCTACTGCTCCCATGTTTGTGCTTTTGGCCCTGT
CTTTTTGGCTTTTTTTCTCTCTCATTTTTCCTGACAGAGTCTTATTCGCC
CGTCTCTAGTTTTGTTTGCGTTGGATGTTTGAGCATCCACTGTAGCTCAT
GATGCGTGCATTGTTGGGTACGTTTCGTTCTGTGCTTGGTGTGTGTGCAG
AACGAGAGGTATGATCGAGGGCTGTTACAAGGCGACTCTGGGACACACTC
TGTGACCGATAGCTACGACCTGAATAGCTACGGGAGCTATGCCTCGGATG
ATGAGGATGGAAATCACGAGGTGGGTCCAGTTCGGACTAGCATTGCGGAT
CATGAATATTAACCGGAATTAGGTGTTAATTTGACCTCTTCTCCCTTCAT
ATATTCATTTTTTTTACCAGCTCGAAACCGAATCCTGTGAAACCAGTTGT
TGGTGAAAGCTCGGATAGCTAGCTCACACTACTGTTGGCGCACATTGATG
GGTTTGGTTGCAGTTTAGATATGAAAATTGGATATAAAATCGTTTCGAGG
TATGTAACCCCTAGAACAAAATAAGCTTTTGACTTTCTCCTACTTGTAGG
TTTGGGGGGTACGGTCAACTTTCAGGTGTAGCTTGACCGCCATCTGCTCG
TGCTATGCGAGTTGTTGATCAATTGCCATGCCGAGCAATCTGGATTATAC
TTTTTAGTAGTGGTGGTACTTTACTTGCAATTTGTCATGTAACACGTGGC
GTTCATCTGTCATGTCTTGAATTTCTTGTCTGTAGTGATGCAGCCAGCGT
TTTGGGAATGCTTGCCGGTGTGCATTGGATGGGTTATTGTTTCGGGTGTC
GCCGAGTGATTGGAAGGGTCTACAGTAGTGGTTACTTGCCCCCCCATCTA
CCCTTCTACAGGTACTATGTCGCTGGTTGATGGTTGCCAGATCGGTTTTC
GTGACGGGTTGTTGCCCTCTTTCGTAGCCCTGTTTGGTATGACTAGTAGG
TCGCGATAATCCTTTCGCGGACGTTGAGGTATTCCATCATGTTCTCGCGT
TCGCCCATCGATATGACCCCTTTTGGCACATGTTGACCGTTTGTGATTCT
GTGTCCTGTCGCCACCTTCTGCCACATGCTCAGTCCAGCGTCATGTGCAT
GCTTTCATCAACGTTCGGCATACCTGTGTCCTCGTGATACAGACAGTCAC
CAATCATGATATAACAACTCTGTACTTGTCACCAATCATGATATAACAAC
TCTGTACTTGCAAAAATTGCAGGTGGGATTGTCCATAGACGGGGATGACG
AAGAAGAACCACGAGGTGGCATCTTAGATCCGAGCTTGGGATCCACGCCA
TCTCCTGAGATCCTGCTGGCCTATGGCAGCGAACATGGAGTCACGCTCCC
AGCGTTTTCACTCCAAGGGGGTAGCAGCAGTAGCCACGGCGTACGAAGCA
GTAGCCACAACATGAGCATACACGGCCATAGCAGCCATGGGTTCAGCGGG
CATGGCTACAGCTGCCACAGCGGGTTGGGGGGGAGGCGCGACGTCGCCAG
TAGACAAGGAAGTGCGGTGGGGGGCATGACGAGGGTTTTAAGTTGGCACG
GAGGGATGTCGCCGTCTGATGCGGGCTTGGAGGACGAAGAAGAGGAGTGT
GAAGTCGGGGTGGGGAGCGAGGAGGACATGGTGGCGCGAAAAATGGAGGC
GGGAGTTTTGGGAACTACCTCGCAGTCAGCCACGACGTGCTATATTTGCT
GCATGCGGCCGGCGGATGCTGTTCTCATGGAGTGTGGGCACAGCGGAATT
TGTTATGCCTGCGCTCAGCACCTTGCCGTAGCGCCTCCGTCGGTGTGCCC
CGTGTGTCGGCACGAGATCCAGCAGGTGCTGAGGTTGAGCCGAATTGTTA
CGGTAAGAAGCGGCGGGAGTCTTGTAGGTGGCAGCGGTGGTGGTGGCGGC
GGCAACGTTTCTGGGGGAGAATATACCAGCGGCGACGAGTTGTCAGGAGG
AGAAGGGTCGGTCGTGGCTATCGCTTCGTCGGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig469:6930..13064+

>mRNA_H-paniculata_contig469.11678.1 ID=mRNA_H-paniculata_contig469.11678.1|Name=mRNA_H-paniculata_contig469.11678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2286bp|location=Sequence derived from alignment at H-paniculata_contig469:6930..13064+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGCGACAGCGGCGTCGGAGGGGGGGGGGGGCAGCGCGCCGACCCGAAA
TTCCCGGAGCTTTCACGGACTGCAGAACATTCTGCCGCAAGCCGCGAGCA
GATTGTCTCGTAGAGAGCGGGGGTTCACGGCAGCTATTGCGGGGACGGGG
TCGCGAGAGACAGCGACAGCGGCGTCGGAGGGGGGGGGGGGCAGCGCGCC
GACCCGAAATTCCCGGAGCTTTCACGGACTGCAGAACATTCTGCCGCAAG
CCGCGAGCAGATTGTCTCGTAGAGAGCGGGGGTTCACGGCAGCTATTGCG
GGGACGGGGTCGCGAGAGGGTCGAGGGAGATTTTCGATGTCGTCGGAACG
ACAGCAGAGAGCTGGGTCGGAAAAAGACGCGTCTCCGAGGCAAAGCGGAG
GGAGTGAGCGGGCGTCCAAGGGTCGAGGGAGATTTTCGATGTCGTCGGAA
CGACAGCAGAGAGCTGGGTCGGAAAAAGACGCGTCTCCGAGGCAAAGCGG
AGGGAGTGAGCGGGCGTCCAAGAACGAGAGGTATGATCGAGGGCTGTTAC
AAGGCGACTCTGGGACACACTCTGTGACCGATAGCTACGACCTGAATAGC
TACGGGAGCTATGCCTCGGATGATGAGGATGGAAATCACGAGAACGAGAG
GTATGATCGAGGGCTGTTACAAGGCGACTCTGGGACACACTCTGTGACCG
ATAGCTACGACCTGAATAGCTACGGGAGCTATGCCTCGGATGATGAGGAT
GGAAATCACGAGGTGGGATTGTCCATAGACGGGGATGACGAAGAAGAACC
ACGAGGTGGCATCTTAGATCCGAGCTTGGGATCCACGCCATCTCCTGAGA
TCCTGCTGGCCTATGGCAGCGAACATGGAGTCACGCTCCCAGCGTTTTCA
CTCCAAGGGGGTAGCAGCAGTAGCCACGGCGTACGAAGCAGTAGCCACAA
CATGAGCATACACGGCCATAGCAGCCATGGGTTCAGCGGGCATGGCTACA
GCTGCCACAGCGGGTTGGGGGGGAGGCGCGACGTCGCCAGTAGACAAGGA
AGTGCGGTGGGGGGCATGACGAGGGTTTTAAGTTGGCACGGAGGGATGTC
GCCGTCTGATGCGGGCTTGGAGGACGAAGAAGAGGAGTGTGAAGTCGGGG
TGGGGAGCGAGGAGGACATGGTGGCGCGAAAAATGGAGGCGGGAGTTTTG
GGAACTACCTCGCAGTCAGCCACGACGTGCTATATTTGCTGCATGCGGCC
GGCGGATGCTGTTCTCATGGAGTGTGGGCACAGCGGAATTTGTTATGCCT
GCGCTCAGCACCTTGCCGTAGCGCCTCCGTCGGTGTGCCCCGTGTGTCGG
CACGAGATCCAGCAGGTGCTGAGGTTGAGCCGAATTGTTACGGTAAGAAG
CGGCGGGAGTCTTGTAGGTGGCAGCGGTGGTGGTGGCGGCGGCAACGTTT
CTGGGGGAGAATATACCAGCGGCGACGAGTTGTCAGGAGGAGAAGGGTCG
GTCGTGGCTATCGCTTCGTCGGGAGTGGGATTGTCCATAGACGGGGATGA
CGAAGAAGAACCACGAGGTGGCATCTTAGATCCGAGCTTGGGATCCACGC
CATCTCCTGAGATCCTGCTGGCCTATGGCAGCGAACATGGAGTCACGCTC
CCAGCGTTTTCACTCCAAGGGGGTAGCAGCAGTAGCCACGGCGTACGAAG
CAGTAGCCACAACATGAGCATACACGGCCATAGCAGCCATGGGTTCAGCG
GGCATGGCTACAGCTGCCACAGCGGGTTGGGGGGGAGGCGCGACGTCGCC
AGTAGACAAGGAAGTGCGGTGGGGGGCATGACGAGGGTTTTAAGTTGGCA
CGGAGGGATGTCGCCGTCTGATGCGGGCTTGGAGGACGAAGAAGAGGAGT
GTGAAGTCGGGGTGGGGAGCGAGGAGGACATGGTGGCGCGAAAAATGGAG
GCGGGAGTTTTGGGAACTACCTCGCAGTCAGCCACGACGTGCTATATTTG
CTGCATGCGGCCGGCGGATGCTGTTCTCATGGAGTGTGGGCACAGCGGAA
TTTGTTATGCCTGCGCTCAGCACCTTGCCGTAGCGCCTCCGTCGGTGTGC
CCCGTGTGTCGGCACGAGATCCAGCAGGTGCTGAGGTTGAGCCGAATTGT
TACGGTAAGAAGCGGCGGGAGTCTTGTAGGTGGCAGCGGTGGTGGTGGCG
GCGGCAACGTTTCTGGGGGAGAATATACCAGCGGCGACGAGTTGTCAGGA
GGAGAAGGGTCGGTCGTGGCTATCGCTTCGTCGGGA
back to top