mRNA_H-paniculata_contig46879.11673.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46879.11673.1
Unique NamemRNA_H-paniculata_contig46879.11673.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46879.11673.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.410e-23
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 LLVDSGATSHFINTELTPGLQERLQDFKLLEKPMPIETAGKHIVYGVAEGIVDGSIIDSNGEQRYVHLRCTLVPGLGRNLFSVKIAARQGVTTIFDLTHPRL 306
            +LVDSGAT ++++  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G++ D +G+ R V  R  LVPGLG NLFSV  A   GV ++F   +PRL
Sbjct:  420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRL 521
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BLAST of mRNA_H-paniculata_contig46879.11673.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.470e-23
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 LLVDSGATSHFINTELTPGLQERLQDFKLLEKPMPIETAGKHIVYGVAEGIVDGSIIDSNGEQRYVHLRCTLVPGLGRNLFSVKIAARQGVTTIFDLTHPRL 306
            +LVDSGAT ++++  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G++ D +G+ R V  R  LVPGLG NLFSV  A   GV ++F   +PRL
Sbjct:  420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRL 521
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BLAST of mRNA_H-paniculata_contig46879.11673.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.800e-23
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 LLVDSGATSHFINTELTPGLQERLQDFKLLEKPMPIETAGKHIVYGVAEGIVDGSIIDSNGEQRYVHLRCTLVPGLGRNLFSVKIAARQGVTTIFDLTHPRL 306
            +LVDSGAT ++++  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G++ D +G+ R V  R  LVPGLG NLFSV  A   GV ++F   +PRL
Sbjct:  420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRL 521
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BLAST of mRNA_H-paniculata_contig46879.11673.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.220e-22
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 LLVDSGATSHFINTELTPGLQERLQDFKLLEKPMPIETAGKHIVYGVAEGIVDGSIIDSNGEQRYVHLRCTLVPGLGRNLFSVKIAARQGVTTIFDLTHPRL 306
            +L+DSGAT ++++  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G++ D +G+ R V  R  LVPGLG NLFSV  A   GV ++F   +PRL
Sbjct:  420 MLMDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPGNPRL 521
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BLAST of mRNA_H-paniculata_contig46879.11673.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.240e-22
Identity = 46/102 (45.10%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 LLVDSGATSHFINTELTPGLQERLQDFKLLEKPMPIETAGKHIVYGVAEGIVDGSIIDSNGEQRYVHLRCTLVPGLGRNLFSVKIAARQGVTTIFDLTHPRL 306
            +L DSGAT ++++  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G++ D +G+ R V  R  LVPGLG NLFSV  A   GV ++F   +PRL
Sbjct:  325 MLEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRL 426
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BLAST of mRNA_H-paniculata_contig46879.11673.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.360e-13
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:   13 SGATSHFINTELTPGLQERLQDFKLLEKPMPIETAGKHIVYGVAEGIVDGSIIDSNGEQRYVHLRCTLVPGLGRNLFSVKIAARQGVTTIFDLTHPRL 306
            SGA+ H++++EL P L+  L DF  +  P  I  AG   + G ++GI+     D  G  R V  +CT+VPGLGR+LFS   A ++G  TI     PR+
Sbjct:  311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTIMS-DQPRI 407
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BLAST of mRNA_H-paniculata_contig46879.11673.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.520e-9
Identity = 32/102 (31.37%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:    1 LLVDSGATSHFINTELTPGLQERLQDFKLLEKPMPIETAGKHIVYGVAEGIVDGSIIDSNGEQRYVHLRCTLVPGLGRNLFSVKIAARQGVTTIFDLTHPRL 306
            + VD+G ++HF++T L P + + + ++  ++ P+ I+  GK   +  A G +  ++ D  G  R + L    VP LGR+LFS   A + GV  +F    P L
Sbjct:    1 MTVDTGVSTHFLDTNLLPDITQNMTEYTKIDPPLIIDVPGKGQPHSSAMGALKVTVSDRQGTPRAIRLPFFCVPDLGRHLFSGGTAMKHGVGVLFTPKSPCL 102
[Close]
BLAST of mRNA_H-paniculata_contig46879.11673.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.520e-6
Identity = 24/76 (31.58%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    7 VDSGATSHFINTELTPGLQERLQDFKLLEKPMPIETAGKHIVYGVAEGIVDGSIIDSNGEQRYVHLRCTLVPGLGR 234
            VD G++  +++T+L PGL+ER+  +++ ++P  I TAG+ ++  + +  + G+  D +GE++ V      V GL R
Sbjct:  176 VDCGSSERYMDTDLHPGLRERMLGYEISKEPHKIITAGEKVIERMGKDTITGTFNDQHGEKQPVSFSAIAVQGLSR 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46879.11673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KYQ2_9PHAE3.410e-2346.08CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KJN3_9PHAE3.470e-2346.08Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE4.800e-2346.08Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.220e-2245.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYB5_9PHAE2.240e-2245.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY84_9PHAE1.360e-1339.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV56_9PHAE1.520e-931.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWF9_9PHAE3.520e-631.58Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46879contigH-paniculata_contig46879:1157..1465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930395.882398-CDS-H-paniculata_contig46879:1156..14651622930395.882398-CDS-H-paniculata_contig46879:1156..1465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46879 1157..1465 +
1691481272.481183-CDS-H-paniculata_contig46879:1156..14651691481272.481183-CDS-H-paniculata_contig46879:1156..1465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46879 1157..1465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46879.11673.1prot_H-paniculata_contig46879.11673.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46879 1157..1465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46879.11673.1

>prot_H-paniculata_contig46879.11673.1 ID=prot_H-paniculata_contig46879.11673.1|Name=mRNA_H-paniculata_contig46879.11673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
LLVDSGATSHFINTELTPGLQERLQDFKLLEKPMPIETAGKHIVYGVAEG
IVDGSIIDSNGEQRYVHLRCTLVPGLGRNLFSVKIAARQGVTTIFDLTHP
RLV
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mRNA from alignment at H-paniculata_contig46879:1157..1465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46879.11673.1 ID=mRNA_H-paniculata_contig46879.11673.1|Name=mRNA_H-paniculata_contig46879.11673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig46879:1157..1465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCTGGTCGACAGCGGAGCGACCTCGCACTTCATCAATACCGAGCTGAC
ACCCGGTCTGCAGGAGCGCCTCCAAGACTTCAAGCTGTTGGAAAAGCCGA
TGCCCATCGAGACGGCTGGCAAGCACATTGTCTACGGAGTTGCAGAGGGC
ATCGTCGATGGGTCCATCATCGATTCGAATGGGGAGCAGCGGTACGTTCA
CCTGCGGTGCACACTAGTGCCCGGCCTAGGGCGTAACCTGTTCTCCGTCA
AGATAGCTGCACGACAAGGAGTTACCACAATCTTCGACCTCACCCACCCT
CGCCTGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig46879:1157..1465+

>mRNA_H-paniculata_contig46879.11673.1 ID=mRNA_H-paniculata_contig46879.11673.1|Name=mRNA_H-paniculata_contig46879.11673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig46879:1157..1465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCTGGTCGACAGCGGAGCGACCTCGCACTTCATCAATACCGAGCTGAC
ACCCGGTCTGCAGGAGCGCCTCCAAGACTTCAAGCTGTTGGAAAAGCCGA
TGCCCATCGAGACGGCTGGCAAGCACATTGTCTACGGAGTTGCAGAGGGC
ATCGTCGATGGGTCCATCATCGATTCGAATGGGGAGCAGCGGTACGTTCA
CCTGCGGTGCACACTAGTGCCCGGCCTAGGGCGTAACCTGTTCTCCGTCA
AGATAGCTGCACGACAAGGAGTTACCACAATCTTCGACCTCACCCACCCT
CGCCTGGTACTGCTGGTCGACAGCGGAGCGACCTCGCACTTCATCAATAC
CGAGCTGACACCCGGTCTGCAGGAGCGCCTCCAAGACTTCAAGCTGTTGG
AAAAGCCGATGCCCATCGAGACGGCTGGCAAGCACATTGTCTACGGAGTT
GCAGAGGGCATCGTCGATGGGTCCATCATCGATTCGAATGGGGAGCAGCG
GTACGTTCACCTGCGGTGCACACTAGTGCCCGGCCTAGGGCGTAACCTGT
TCTCCGTCAAGATAGCTGCACGACAAGGAGTTACCACAATCTTCGACCTC
ACCCACCCTCGCCTGGTA
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