mRNA_H-paniculata_contig46865.11671.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46865.11671.1
Unique NamemRNA_H-paniculata_contig46865.11671.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46865.11671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46865contigH-paniculata_contig46865:34..1217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1150
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46865.11671.1prot_H-paniculata_contig46865.11671.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46865 168..975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930395.6855304-UTR-H-paniculata_contig46865:33..1671622930395.6855304-UTR-H-paniculata_contig46865:33..167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46865 34..167 +
1691481272.4197712-UTR-H-paniculata_contig46865:33..1671691481272.4197712-UTR-H-paniculata_contig46865:33..167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46865 34..167 +
1622930395.7425232-UTR-H-paniculata_contig46865:975..12171622930395.7425232-UTR-H-paniculata_contig46865:975..1217Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46865 976..1217 +
1691481272.452239-UTR-H-paniculata_contig46865:975..12171691481272.452239-UTR-H-paniculata_contig46865:975..1217Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46865 976..1217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930395.7057252-CDS-H-paniculata_contig46865:167..8021622930395.7057252-CDS-H-paniculata_contig46865:167..802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46865 168..802 +
1691481272.429434-CDS-H-paniculata_contig46865:167..8021691481272.429434-CDS-H-paniculata_contig46865:167..802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46865 168..802 +
1622930395.725754-CDS-H-paniculata_contig46865:836..9751622930395.725754-CDS-H-paniculata_contig46865:836..975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46865 837..975 +
1691481272.4411588-CDS-H-paniculata_contig46865:836..9751691481272.4411588-CDS-H-paniculata_contig46865:836..975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46865 837..975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46865.11671.1

>prot_H-paniculata_contig46865.11671.1 ID=prot_H-paniculata_contig46865.11671.1|Name=mRNA_H-paniculata_contig46865.11671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
MSSNASTIGVQTRAAAAHAAAVGPTHQSKQQIRSSPGHPSGTQSPGYLQH
SQAALVNNQPDPLSPRSPGASSNSSSSSMGIHTVKPHNFRQILDLTPPPA
RLFQPTVNSTSLPTPHPLRTAAPTVSSIHNDRPLSTGRVATAEQEAAQAK
AHEEALRQALGAAEAASAEKTRAVQLATEAEHQQQQERTSMQAQYQPDVA
SLTAQIQQLQAHKKRPRLTYTICNAASSVTRSASVNYGNNQTAGRRLRTM
EPGRAGV*
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mRNA from alignment at H-paniculata_contig46865:34..1217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46865.11671.1 ID=mRNA_H-paniculata_contig46865.11671.1|Name=mRNA_H-paniculata_contig46865.11671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1184bp|location=Sequence derived from alignment at H-paniculata_contig46865:34..1217+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGTACCGCTCTGAGAGCATTGTGCAGCATAGTCAGTAACAGGAAAC
GATAACCTACGTGTGTGAGATACCCCGCATAACGCAAAGCAGTTATCATC
ACACTGGCGTCGCAGCGGTAACCTGTTACAGACAATGTCGTCCAACGCTT
CCACGATCGGGGTACAGACTCGGGCGGCAGCCGCTCACGCGGCCGCGGTA
GGCCCGACGCATCAGTCCAAGCAACAGATTCGGTCCTCCCCAGGACACCC
TTCCGGGACACAGTCTCCGGGGTACCTGCAACACTCACAGGCAGCCCTCG
TCAACAACCAGCCCGACCCTTTATCGCCAAGATCACCGGGAGCAAGCAGC
AATTCTTCCTCCTCGTCAATGGGCATCCACACCGTGAAACCTCACAACTT
CCGGCAAATCCTGGACCTAACCCCACCTCCCGCCAGATTATTCCAGCCAA
CGGTCAACTCAACGTCCCTGCCCACCCCGCATCCACTGCGCACGGCGGCC
CCTACGGTTTCGTCAATCCACAACGACCGACCTCTCTCAACGGGTCGAGT
AGCTACAGCGGAACAGGAGGCTGCCCAGGCCAAGGCACACGAAGAGGCAC
TGAGACAAGCACTCGGTGCCGCGGAAGCAGCCAGCGCGGAGAAGACACGG
GCGGTACAGCTCGCTACGGAGGCGGAGCATCAACAACAGCAGGAGCGGAC
GAGTATGCAGGCGCAGTACCAACCCGACGTAGCAAGCCTCACAGCTCAAA
TACAACAACTGCAAGCCCAGCAGGAGACGTTCGCCATTCAAGTACAAGCT
CAGCAAGAAGCGTCCGCGGCTCACATACACAATCTGCAACGCAGCGTCCA
GCGTCACGAGGAGTGCTTCCGTCAACTACGGCAACAACCAAACCGCAGGA
CGACGACTGCGAACAATGGAGCCGGGCCGGGCGGGAGTGTAGGAGAGCCG
GAGGGAAACGGAGGAGCCGAACCGGGGGGGAATGGAGGAGCCGGATCGAG
GTGGAATGGAGGCGCCGGACCGGGGGGGAATGGAGGAGCCGGACCGGGAT
GGAATGGAGGAGCCGGACCGGGGTGGAATGGAGGAGCCGGACCGGGGTGG
AATGGAGGAGCCGGGCCGGGATGGAATGGAGGAGCCGGGCCGGGGTGGAA
TGGAGGAGCCGGACCGGGATGGAATGGAGGAGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig46865:34..1217+

>mRNA_H-paniculata_contig46865.11671.1 ID=mRNA_H-paniculata_contig46865.11671.1|Name=mRNA_H-paniculata_contig46865.11671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig46865:34..1217+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTCCAACGCTTCCACGATCGGGGTACAGACTCGGGCGGCAGCCGC
TCACGCGGCCGCGGTAGGCCCGACGCATCAGTCCAAGCAACAGATTCGGT
CCTCCCCAGGACACCCTTCCGGGACACAGTCTCCGGGGTACCTGCAACAC
TCACAGGCAGCCCTCGTCAACAACCAGCCCGACCCTTTATCGCCAAGATC
ACCGGGAGCAAGCAGCAATTCTTCCTCCTCGTCAATGGGCATCCACACCG
TGAAACCTCACAACTTCCGGCAAATCCTGGACCTAACCCCACCTCCCGCC
AGATTATTCCAGCCAACGGTCAACTCAACGTCCCTGCCCACCCCGCATCC
ACTGCGCACGGCGGCCCCTACGGTTTCGTCAATCCACAACGACCGACCTC
TCTCAACGGGTCGAGTAGCTACAGCGGAACAGGAGGCTGCCCAGGCCAAG
GCACACGAAGAGGCACTGAGACAAGCACTCGGTGCCGCGGAAGCAGCCAG
CGCGGAGAAGACACGGGCGGTACAGCTCGCTACGGAGGCGGAGCATCAAC
AACAGCAGGAGCGGACGAGTATGCAGGCGCAGTACCAACCCGACGTAGCA
AGCCTCACAGCTCAAATACAACAACTGCAAGCCCAATGTCGTCCAACGCT
TCCACGATCGGGGTACAGACTCGGGCGGCAGCCGCTCACGCGGCCGCGGT
AGGCCCGACGCATCAGTCCAAGCAACAGATTCGGTCCTCCCCAGGACACC
CTTCCGGGACACAGTCTCCGGGGTACCTGCAACACTCACAGGCAGCCCTC
GTCAACAACCAGCCCGACCCTTTATCGCCAAGATCACCGGGAGCAAGCAG
CAATTCTTCCTCCTCGTCAATGGGCATCCACACCGTGAAACCTCACAACT
TCCGGCAAATCCTGGACCTAACCCCACCTCCCGCCAGATTATTCCAGCCA
ACGGTCAACTCAACGTCCCTGCCCACCCCGCATCCACTGCGCACGGCGGC
CCCTACGGTTTCGTCAATCCACAACGACCGACCTCTCTCAACGGGTCGAG
TAGCTACAGCGGAACAGGAGGCTGCCCAGGCCAAGGCACACGAAGAGGCA
CTGAGACAAGCACTCGGTGCCGCGGAAGCAGCCAGCGCGGAGAAGACACG
GGCGGTACAGCTCGCTACGGAGGCGGAGCATCAACAACAGCAGGAGCGGA
CGAGTATGCAGGCGCAGTACCAACCCGACGTAGCAAGCCTCACAGCTCAA
ATACAACAACTGCAAGCCCACAAGAAGCGTCCGCGGCTCACATACACAAT
CTGCAACGCAGCGTCCAGCGTCACGAGGAGTGCTTCCGTCAACTACGGCA
ACAACCAAACCGCAGGACGACGACTGCGAACAATGGAGCCGGGCCGGGCG
GGAGTGTAGCAAGAAGCGTCCGCGGCTCACATACACAATCTGCAACGCAG
CGTCCAGCGTCACGAGGAGTGCTTCCGTCAACTACGGCAACAACCAAACC
GCAGGACGACGACTGCGAACAATGGAGCCGGGCCGGGCGGGAGTGTAG
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