mRNA_H-paniculata_contig46864.11669.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46864.11669.1
Unique NamemRNA_H-paniculata_contig46864.11669.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: D7FJ79_ECTSI (CBS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ79_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.480e-30
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLEKKAMRAE 236
            +A+RL+P  T +SEVMTP+PT+V M D AM CLGIM+E+RFRHLPV+DG G + G+LSIAKCLYDAI RL+KKA RAE
Sbjct:   32 VANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAE 109          
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: A0A6H5K5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5J8_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.290e-28
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLEKKAMRAEEKAASGGDS------SDLAASFLKV 293
            +A+RL+P  T +SEVMTP+PT+V M D AM CLGIM+E+RFRHLPV+DG G + G+LSIAKCLYDAI RL+KKA RAE               +DLAAS L++
Sbjct:   41 VANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXXADLAASVLQM 143          
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 8.100e-28
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLEKKAMRAE 236
            +A+RL+P  T +SEVMTP+PT+V M D AM CLGIM+E+RFRHLPV+DG G + G+LSIAKCLYDAI RL+KKA RAE
Sbjct: 1932 VANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAE 2009          
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: A0A7S1VMX7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMX7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.550e-19
Identity = 50/104 (48.08%), Postives = 65/104 (62.50%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLE---KKAMRAEEKA------ASGGDSSDLAASFL 287
            +A R+ P  T + + MTPNPT VR+ D AM  LGIM+E+RFRHLPVVD  G + G+L IA+CL+  I +LE   KK   A E+A      A GG S++ A   L
Sbjct: 1889 VAKRMMPVSTLVQDAMTPNPTCVRLQDSAMEALGIMIEKRFRHLPVVDEHGSVVGLLDIARCLHQTIDKLERSQKKQNSAAEEALTKIIDAQGGHSANAALKSL 1992          
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: A0A7S2PMW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PMW1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.560e-18
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLEKKAMRAEEKAAS 251
            +A  + P+ T IS VMT NPT V M D AM  LG MVE  FRHLPVVD +G + G+L IAKCL DAI +LEK   + +  AA+
Sbjct:   80 VAKYIEPESTSISSVMTANPTCVAMSDSAMDALGTMVENHFRHLPVVDDNGGVVGLLDIAKCLNDAISKLEKSESKKDGNAAA 162          
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: A0A7S4D9S5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9S5_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 4.340e-18
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLEKKAMRAEEKAASGGDSS--DLAASFLK 290
            LA  L+P+ T +S+VMTP P  VR+ D A+  LG M  R FRHLPV+D  G +AGVL IA+CL+DA+  LEK      + A  GGD +   LA  FL+
Sbjct:   41 LAQYLDPEETEVSKVMTPEPEHVRLGDPALEALGTMARRGFRHLPVLDDQGRVAGVLDIARCLHDAVAVLEKL-----QGALDGGDPTAHPLARRFLE 133          
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: A0A7R9VL18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VL18_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.800e-17
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLEKKAMRAEEKAASGGDSS 266
            +A  ++P  T +S VMT +PT V M D AM  L  MVE  FRHLPVVD +G + G+L IAKCL DAI +LE    RA+EK+ S  + +
Sbjct:   86 VAKHVDPSSTSVSAVMTASPTCVSMTDSAMDALATMVENHFRHLPVVDDNGAVVGLLDIAKCLNDAISKLE----RAQEKSGSAAEDA 169          
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: A0A7S0GJB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJB2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.410e-17
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLEKKAMRAEEKAASGGD 260
            +A RL+     +  VMTPNPT V M D AM+ L IMV+  FRHLPV++  G I G+L IAKCL DAI +LE    R+++K+++  +
Sbjct:   66 VAQRLDASSAIVEMVMTPNPTCVTMSDSAMSALSIMVDNHFRHLPVLNDLGAIVGLLDIAKCLNDAISKLE----RSQDKSSNAAE 147          
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: B7G2M6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2M6_PHATC)

HSP 1 Score: 84.7 bits (208), Expect = 4.060e-17
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLEKKAMRAEEKAASGGDSS 266
            +A  ++   T +SEVMTPNPT V M D AM  L  MVE  FRHLPVVD  G + G+L IAKCL DAI +LE    R  EK  S  + +
Sbjct:   62 VAKHIDTSATSVSEVMTPNPTCVAMSDSAMDALTTMVENHFRHLPVVDDQGSVVGLLDIAKCLNDAISKLE----RTSEKTNSAAEDA 145          
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Match: A0A7R9VME7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VME7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.910e-17
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 3
Query:    3 LAHRLNPQMTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLSIAKCLYDAIHRLEKKAMRAEEKAASGGDSS 266
            +A  ++P  T +S VMT +PT V M D AM  L  MVE  FRHLPVVD +G + G+L IAKCL DAI +LE    RA+EK+ S  + +
Sbjct:  421 VAKHVDPSSTSVSAVMTASPTCVSMTDSAMDALATMVENHFRHLPVVDDNGAVVGLLDIAKCLNDAISKLE----RAQEKSGSAAEDA 504          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46864.11669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ79_ECTSI2.480e-3069.23CBS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5J8_9PHAE2.290e-2858.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6N9_ECTSI8.100e-2869.23Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A7S1VMX7_9STRA3.550e-1948.08Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2PMW1_9STRA1.560e-1854.22Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S4D9S5_HETAK4.340e-1848.98Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9VL18_9STRA2.800e-1750.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0GJB2_9STRA3.410e-1747.67Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
B7G2M6_PHATC4.060e-1751.14Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7R9VME7_9STRA4.910e-1750.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46864contigH-paniculata_contig46864:85..933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Exons2
Model size302
Cds size276
Stop1
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.7e-21
Seed eggNOG ortholog2880.D7G6N9
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Ec32 ortholog descriptionCBS domain
Ec32 orthologEc-00_000890.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46864.11669.1prot_H-paniculata_contig46864.11669.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46864 85..907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930395.5532527-CDS-H-paniculata_contig46864:84..2491622930395.5532527-CDS-H-paniculata_contig46864:84..249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46864 85..249 -
1691481272.379266-CDS-H-paniculata_contig46864:84..2491691481272.379266-CDS-H-paniculata_contig46864:84..249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46864 85..249 -
1622930395.5719135-CDS-H-paniculata_contig46864:796..9071622930395.5719135-CDS-H-paniculata_contig46864:796..907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46864 797..907 -
1691481272.389651-CDS-H-paniculata_contig46864:796..9071691481272.389651-CDS-H-paniculata_contig46864:796..907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46864 797..907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930395.5910015-UTR-H-paniculata_contig46864:907..9331622930395.5910015-UTR-H-paniculata_contig46864:907..933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46864 908..933 -
1691481272.399077-UTR-H-paniculata_contig46864:907..9331691481272.399077-UTR-H-paniculata_contig46864:907..933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46864 908..933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46864.11669.1

>prot_H-paniculata_contig46864.11669.1 ID=prot_H-paniculata_contig46864.11669.1|Name=mRNA_H-paniculata_contig46864.11669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MTFISEVMTPNPTMVRMDDDAMTCLGIMVERRFRHLPVVDGSGIIAGVLS
IAKCLYDAIHRLEKKAMRAEEKAASGGDSSDLAASFLKVLV*
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mRNA from alignment at H-paniculata_contig46864:85..933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46864.11669.1 ID=mRNA_H-paniculata_contig46864.11669.1|Name=mRNA_H-paniculata_contig46864.11669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=849bp|location=Sequence derived from alignment at H-paniculata_contig46864:85..933- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGGCGCATAGGCTAAACCCTCAAATGACTTTCATCAGCGAAGTGATG ACACCAAACCCCACCATGGTGAGAATGGATGACGACGCCATGACCTGCTT GGGCATCATGGTCGAGAGGCGCTTCAGGCACCTACCGGTGAGTTTTCTTC ATCTTTGTCATGATATAACGTTGAATGCCTTGATATGTTCCCTAACCCTA AACAGTGTATTGCTTGTGGAGCGTCTTGAGCTGTCGCAAGCGTGTAGAGT AGTGCAGATTACCCTACTTGGTGCACGATAAATACATGTATTCAATCGCT CCAGCAAAGCAAGAGCAATACACGTCCAATGGACCTTTTGTCTTACCGTC GTTATCGTCATGGTGATCGCTATGGTCTAGTATCGAAAGCGCGGAACACG TGCAATCGATGTGTAGCGTTGGTGTCTGTTGATGTTGTATGGATGTGGAA TGGTTCGCTGTGGTACGTGGCGGATGTCGCTACTATCGCTGTCTGATGAT ATATGGAGCTAGAGGAATGGCACCCACGACATGGACGGCCGTGTCCACAA GCGGCATTATGGCCGATACATGACGCACGGTAGTGTGGTGTTACCGAGGA CGGAGAAGTTTAGTGTTTGATGTTTCCTCTTTCCTGGCCGCATGCGCATT CGCGACGGCGACGGCGATGGTGGATATATTCCAGGTGGTGGACGGTAGTG GAATCATCGCCGGGGTGTTGAGCATCGCAAAATGTCTATACGACGCCATC CATAGACTGGAGAAGAAGGCGATGAGGGCTGAGGAGAAAGCTGCGTCAGG CGGGGATAGCAGCGATCTGGCTGCTTCTTTTCTCAAGGTACTGGTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig46864:85..933-

>mRNA_H-paniculata_contig46864.11669.1 ID=mRNA_H-paniculata_contig46864.11669.1|Name=mRNA_H-paniculata_contig46864.11669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig46864:85..933- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTTCATCAGCGAAGTGATGACACCAAACCCCACCATGGTGAGAAT
GGATGACGACGCCATGACCTGCTTGGGCATCATGGTCGAGAGGCGCTTCA
GGCACCTACCGATGACTTTCATCAGCGAAGTGATGACACCAAACCCCACC
ATGGTGAGAATGGATGACGACGCCATGACCTGCTTGGGCATCATGGTCGA
GAGGCGCTTCAGGCACCTACCGGTGGTGGACGGTAGTGGAATCATCGCCG
GGGTGTTGAGCATCGCAAAATGTCTATACGACGCCATCCATAGACTGGAG
AAGAAGGCGATGAGGGCTGAGGAGAAAGCTGCGTCAGGCGGGGATAGCAG
CGATCTGGCTGCTTCTTTTCTCAAGGTACTGGTATAGGTGGTGGACGGTA
GTGGAATCATCGCCGGGGTGTTGAGCATCGCAAAATGTCTATACGACGCC
ATCCATAGACTGGAGAAGAAGGCGATGAGGGCTGAGGAGAAAGCTGCGTC
AGGCGGGGATAGCAGCGATCTGGCTGCTTCTTTTCTCAAGGTACTGGTAT
AG
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