mRNA_H-paniculata_contig4682.11661.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4682.11661.1
Unique NamemRNA_H-paniculata_contig4682.11661.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: D8LJK9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK9_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 3.050e-36
Identity = 101/254 (39.76%), Postives = 139/254 (54.72%), Query Frame = 3 
Query: 1479 GCCGPDALINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAIPVVLAIPNSKAIAGEAGT-FELFVFLMFILACCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSISSDAPARVNHRLVFTLVALIYLLLLALAWRTLTLETLQLAPPPPVSWRVGRLVRGIGAKMELDVAG--KCDR 2231
            G CGP  L++   VK LL ++C +     G +E++PLWALST  VGGL+W T +IG+ L ++G  + V    +FP +++ LG VT  R   +L I   LA PN+K  +    T F   V  + +  CC +AV     +L +ASTSIVP+  RG+L GL+ TAESFGR     G   ++AWSISSD P  V+HR VF   AL   +   +AWRTL  E L      P +  V  ++   G   + D  G   C R
Sbjct:  268 GLCGPGGLLSVPRVKPLLFLVCVVQSLLAGFEEVFPLWALSTVGVGGLDWGTMEIGKVLFLSGCIMVVAQVFIFPSVIKILGAVTWMRTGCLLGICTFLATPNAKLFSWNHTTLFAALVASVTVANCCLAAVG---IALAVASTSIVPSRLRGKLSGLYGTAESFGRFASAVGSGVLFAWSISSDNPDWVDHRFVFYSSALSLGVATVVAWRTLPAEILG---DKPAAENVEDVIHDAGLTPKSDPKGIVSCSR 515
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: A0A6H5K449_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K449_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 6.010e-36
Identity = 96/234 (41.03%), Postives = 134/234 (57.26%), Query Frame = 3 
Query: 1467 GNVLGCCGPDALINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAIPVVLAIP-------NSKAIAGEAGTFELFVFLMFILACCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSISSDA----PARVNHRLVFTLVALIYLLLLALAWRTLTLETLQ 2135
            G+ LG  GP  L+   +VK++L++ C +S  +IG DE+YPL+ALST  VGGL W+T +IG+ L + G  +A     LFP L++ +GI T QR    + I   LAIP       N  ++ G +   +        LA C      L  +L+I ST++VP+  RG+LGGLF TAES GR +GP G+A +YAWS+S          V++R VF + A    L+ ALAWRTL  E L 
Sbjct:   41 GDELGILGPSGLLATPHVKMVLLLTCIISTVSIGFDEVYPLFALSTPDVGGLGWSTVEIGKVLVMTGVLMACCQLFLFPPLIKIVGITTWQRLGCRIGIATFLAIPAVNVFSWNFNSLVGVSRAADT-------LANCGCGAVDL--ALSIGSTTLVPSNMRGKLGGLFNTAESLGRFIGPAGYAIVYAWSVSPSTLDAFGGWVDYRFVFNVSAAALALVAALAWRTLATENLM 265
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: D7G0L9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L9_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 9.080e-35
Identity = 94/227 (41.41%), Postives = 129/227 (56.83%), Query Frame = 3 
Query: 1467 GNVLGCCGPDALINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAIPVVLAIPNSKAIAGEAGTFELFVFLMFILACCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSISSDA----PARVNHRLVFTLVALIYLLLLALAWRTLTLETLQ 2135
            G+  G  GP  L+   +VK++L + C +S  +IG DE+YPL+A ST  VGGL W+T +IG+ L + G  +A    +LFP L++ +GI T QR    + I   LAIP     +    +          LA C+     L  +L+I ST++VP+  RG+LGGLF TAES GR +GP G+A +YAWS+S          V+HR VF   A    L+ ALAWRTLT E L 
Sbjct:  210 GDEPGLLGPSGLLATPHVKMVLFLTCIISTVSIGFDEVYPLFAFSTPDVGGLGWSTVEIGKVLVMTGVLMACCQLLLFPPLIKMVGITTWQRLGCRIGIAAFLAIPAVNVFSWNFNSLVGVSVAANTLANCSCGAVDL--ALSIGSTTLVPSNMRGKLGGLFNTAESLGRFIGPAGYAIVYAWSVSPSTLDAFGGWVDHRFVFYASAAALALVAALAWRTLTTENLM 434
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: A0A6H5JRQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ3_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.550e-34
Identity = 95/227 (41.85%), Postives = 130/227 (57.27%), Query Frame = 3 
Query: 1467 GNVLGCCGPDALINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAIPVVLAIPNSKAIAGEAGTFELFVFLMFILACCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSISSDA----PARVNHRLVFTLVALIYLLLLALAWRTLTLETLQ 2135
            GN  G  GP  L+   +VK++L + C +S  +IG DE+YPL+ALST  VGGL W+T +IG+ L + G  +A    +LFP L++ +GI T QR    + I   LAIP     +    +          LA C+     L  +L+I ST++VP+  RG+LGGLF TAES GR +GP G+A +YAWS+S          V++R VF   A    L+ ALAWRTLT E L 
Sbjct:  376 GNEPGLLGPSGLLATPHVKMVLFLTCIISTVSIGFDEVYPLFALSTPDVGGLGWSTVEIGKVLVMTGVLMACCQLLLFPPLIKMVGITTWQRLGCRIGIAAFLAIPAVNVFSWNFNSLVGVSVAANTLANCSCGAVDL--ALSIGSTTLVPSNMRGKLGGLFNTAESLGRFIGPAGYAIVYAWSVSPSTLDAFGGWVDYRFVFDASAAALALVAALAWRTLTTENLM 600
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: A0A6H5JAX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX4_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 2.690e-32
Identity = 98/254 (38.58%), Postives = 139/254 (54.72%), Query Frame = 3 
Query: 1479 GCCGPDALINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAIPVVLAIPNSKAIAGEAGT-FELFVFLMFILACCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSISSDAPARVNHRLVFTLVALIYLLLLALAWRTLTLETLQLAPPPPVSWRVGRLVR--GIGAKMELDVAGKCDR 2231
            G CGP  L++   VK LL ++C +     G +E++PLWALST  VGGL+W T +IG+ L ++G  + V    +FP +++ LG VT  R   +L I   LA PN+K  +    T F   V  + I+ C  +AV     +L +AST IV +  RG+L GL+ TAESFGR     G A ++AWSISSD    V+HR VF   AL   +   +AWRTL  E   ++   P +  V  ++   G+  K +  V   C R
Sbjct:  305 GHCGPGGLLSVPRVKPLLFLVCVVQSLLAGFEEVFPLWALSTVGVGGLDWGTMEIGKVLFVSGCIMVVAQVFIFPSVIKILGAVTWMRTGCLLGICTFLATPNAKLFSWNYTTLFVASVASVTIVNCSLAAVG---IALAVASTDIVSSRLRGKLSGLYGTAESFGRFASAVGSAVLFAWSISSDNLGWVDHRFVFYSSALALGVATVVAWRTLPAE---ISGDKPAAENVEDVIHDAGLTPKSDPKVFVSCSR 552
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: D8LJX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX7_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 5.080e-30
Identity = 88/225 (39.11%), Postives = 125/225 (55.56%), Query Frame = 3 
Query: 1476 LGCCGPDALINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAIPVVLAIPNSKAIAGE-AGTFELFVFLMFILACCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSISSDAPAR----VNHRLVFTLVALIYLLLLALAWRTLTLETLQ 2135
            +G  G   L+   +VK LL + C +    IG +E YPL+ALST  VGGL W T QIG+ L + G  +A +  +L P L++ +GI   QR   ++     +AIP+ + ++      F   V      +C  +AV+  M+   + ST++VP+  RG+LGGL+  AES GR LGP GFA  YAWS+S  + A     VN R VF + A++  L   LAW TLT E L 
Sbjct:  161 IGIFGRHGLLVTPHVKTLLTLGCVVQALQIGFEEAYPLFALSTPDVGGLGWNTFQIGKVLVMTGLFMACFQLLLLPPLIKVVGITNWQRVGFVVGALAFIAIPSVRLLSWNYPSLFSASVAANTFASCGLAAVTLAMS---VGSTTLVPSRMRGKLGGLYNMAESLGRFLGPAGFAITYAWSVSPSSSAAGFDWVNFRFVFWVSAVLLALCAVLAWPTLTAENLM 382
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: A0A6H5K5T8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.680e-29
Identity = 88/225 (39.11%), Postives = 125/225 (55.56%), Query Frame = 3 
Query: 1476 LGCCGPDALINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAIPVVLAIPNSKAIAGE-AGTFELFVFLMFILACCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSISSDAPAR----VNHRLVFTLVALIYLLLLALAWRTLTLETLQ 2135
            +G  G   L+   +VK LL + C +    IG DE YPL+ALST  VGGL W T QIG+ L + G  +A +  +L P L++ +GI   QR    +     +AIP+ ++++      F   V +    +C  +AV+  M+   + ST++VP+  RG+LGGL+  AES GR LGP GFA  YAWS+S  + A     VN R VF   A++  +   LAW TLT E L 
Sbjct:  329 IGIFGRHGLLATPHVKTLLTLGCVVMALQIGFDEAYPLFALSTPDVGGLGWNTLQIGKVLVMTGLFMACFQLLLLPPLIKVVGITKWQRVGFCVGALAFIAIPSVRSLSWNYPSLFSASVAVNTFASCGLAAVALTMS---VGSTTLVPSRMRGKLGGLYNMAESLGRFLGPAGFAISYAWSVSPSSSAAGVDWVNFRFVFWASAVLLAMCAVLAWSTLTAENLM 550
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 6.070e-23
Identity = 73/201 (36.32%), Postives = 108/201 (53.73%), Query Frame = 3 
Query: 1482 CCGPDALINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAIPVVLAIPNSKAIAGEAGTFELFVFLMFILACCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSISSDA--PARVNHRLVFTLVAL 2078
            C  P  L+    V+ +L +    S + IG  EIYPLWALST A GGL+WTT QIGQ L + G G+  +  V++P L +R+G+   QR +  LAIPV    P    + G      +   ++   +  T+  + +  ++ +A+ + V   RR  L GL MT  S  +  GP  F+ I+AWSI  D   P  +++ LVF L+AL
Sbjct:  455 CLVPVRLLEEKRVRAILFVYGIYSFSLIGFGEIYPLWALSTVASGGLDWTTKQIGQVLSLVGVGMLAFQLVVYPWLSKRIGVTRSQRWACFLAIPVYAFFPFLSRLRGSGVPLVVGSIVLNFFSNVTA--TAVFINIALATNNAVEPSRRATLNGLSMTLGSLAKAAGPAFFSAIFAWSIDDDGRRPFPLDYHLVFYLLAL 653
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 9.740e-23
Identity = 75/214 (35.05%), Postives = 118/214 (55.14%), Query Frame = 3 
Query: 1482 CCGPDALINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAIPVVLAIPNSKAIAGEAGTFELFVFLMFILACCTSAVS-TLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSISSDA-PARVNHRLVFTLVALIYLLLLALAWRTL 2117
            C  P  L+     + ++ +    S   IG  E+YPLWALST A GGL+W++ QIGQ+L + G  +  +  +++PRL +R+G    QR +  L+IPV L  P    + G   T      ++  L   T+AV+ T+  ++ +A+ + V   RRG L GL MT  S  +  GPT F++I+AWSI     P  +++ L F L+AL  +L+   +W T+
Sbjct:  412 CLVPIQLLTERRTRNVMFVYALFSFVAIGNRELYPLWALSTVASGGLDWSSKQIGQALSVCGIFMLFFQLLVYPRLSKRIGATRSQRWACFLSIPVFLVFPTLSHLRGTERTLVAASLVLLFL---TNAVANTVFINVALATNNAVEPSRRGTLTGLSMTTGSLAKAAGPTFFSSIFAWSIDGRRRPFPLDYHLAFYLLALGMVLVSWASWGTI 622
[Close]
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.390e-16
Identity = 67/217 (30.88%), Postives = 110/217 (50.69%), Query Frame = 3 
Query: 1500 LINAGYVKVLLVMICFMSVANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFPRLVQRLGIVTVQRASAILAI------PVVLAIPNSKAIAGEAGTFELFVFLMFILACCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFATIYAWSIS-----SDAPARVNHRLVFTLVALIYLLLLALAWRTL 2117
            L+ AG+V+VLLV+    +    G ++++ LWALSTT VGGL+W+  QIGQ L  +G  + V++    P + +RLG+   QR S+I  +      PV+  +PN+  +   A    LF           S        ++ A  +    ER G++ GL     S    +GP  ++ +YA+S+      S  P  ++ RL F L+A + L++  L+W T+
Sbjct:  240 LLAAGHVRVLLVVYGIYTFIISGFEDLFALWALSTTPVGGLDWSAEQIGQVLLASGLMVFVFELFAVPLVTKRLGVTISQRLSSITLVFVLPLVPVLGRLPNTGHLLMIASVGLLFTVY--------STCDAFYTCISFAINNAAEPERCGEVNGLAACVASVVSAVGPAAWSALYAFSVEFADGRSPFPFPIDFRLAFWLMAFLRLVVAILSWSTI 448
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4682.11661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJK9_ECTSI3.050e-3639.76MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K449_9PHAE6.010e-3641.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0L9_ECTSI9.080e-3541.41MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JRQ3_9PHAE2.550e-3441.85MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JAX4_9PHAE2.690e-3238.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJX7_ECTSI5.080e-3039.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5T8_9PHAE4.680e-2939.11MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRH7_ECTSI6.070e-2336.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRH9_ECTSI9.740e-2335.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZQ3_9PHAE8.390e-1630.88MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4682contigH-paniculata_contig4682:183..6364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue1.4e-35
Seed eggNOG ortholog2880.D8LJK9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2486
Cds size1332
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.594839-UTR-H-paniculata_contig4682:182..3831622930394.594839-UTR-H-paniculata_contig4682:182..383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4682 183..383 -
1691481271.9324572-UTR-H-paniculata_contig4682:182..3831691481271.9324572-UTR-H-paniculata_contig4682:182..383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4682 183..383 -
1622930394.6701293-UTR-H-paniculata_contig4682:4934..52411622930394.6701293-UTR-H-paniculata_contig4682:4934..5241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4682 4935..5241 -
1691481272.0054176-UTR-H-paniculata_contig4682:4934..52411691481272.0054176-UTR-H-paniculata_contig4682:4934..5241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4682 4935..5241 -
1622930394.6880865-UTR-H-paniculata_contig4682:5718..63641622930394.6880865-UTR-H-paniculata_contig4682:5718..6364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4682 5719..6364 -
1691481272.0156496-UTR-H-paniculata_contig4682:5718..63641691481272.0156496-UTR-H-paniculata_contig4682:5718..6364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4682 5719..6364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.608293-CDS-H-paniculata_contig4682:383..7911622930394.608293-CDS-H-paniculata_contig4682:383..791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 384..791 -
1691481271.953039-CDS-H-paniculata_contig4682:383..7911691481271.953039-CDS-H-paniculata_contig4682:383..791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 384..791 -
1622930394.622762-CDS-H-paniculata_contig4682:2426..26541622930394.622762-CDS-H-paniculata_contig4682:2426..2654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 2427..2654 -
1691481271.964692-CDS-H-paniculata_contig4682:2426..26541691481271.964692-CDS-H-paniculata_contig4682:2426..2654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 2427..2654 -
1622930394.6364148-CDS-H-paniculata_contig4682:3599..36951622930394.6364148-CDS-H-paniculata_contig4682:3599..3695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 3600..3695 -
1691481271.9822078-CDS-H-paniculata_contig4682:3599..36951691481271.9822078-CDS-H-paniculata_contig4682:3599..3695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 3600..3695 -
1622930394.649298-CDS-H-paniculata_contig4682:4334..49341622930394.649298-CDS-H-paniculata_contig4682:4334..4934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 4335..4934 -
1691481271.9948666-CDS-H-paniculata_contig4682:4334..49341691481271.9948666-CDS-H-paniculata_contig4682:4334..4934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4682 4335..4934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4682.11661.1prot_H-paniculata_contig4682.11661.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4682 384..4934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4682.11661.1

>prot_H-paniculata_contig4682.11661.1 ID=prot_H-paniculata_contig4682.11661.1|Name=mRNA_H-paniculata_contig4682.11661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=444bp
MHESDPNAKRKIDRRVSGGVGTGGGGGDDNDYGGGGRDGCCAGDRGRLKV
AQTLSVNSTVNGSVSSSSSSLPRSLSSITTTAPPAFGGRARGQCTTPGGC
SNIDGDDYDDGHATDGDHGVSVLTRSTAVTTDISSRGRQAGGRAARESSG
RQLRGRENLAPAAAATAGNRGGNVLGCCGPDALINAGYVKVLLVMICFMS
VANIGLDEIYPLWALSTTAVGGLNWTTSQIGQSLGIAGAGLAVYDFVLFP
RLVQRLGIVTVQRASAILAIPVVLAIPNSKAIAGEAGTFELFVFLMFILA
CCTSAVSTLMASLTIASTSIVPAERRGQLGGLFMTAESFGRCLGPTGFAT
IYAWSISSDAPARVNHRLVFTLVALIYLLLLALAWRTLTLETLQLAPPPP
VSWRVGRLVRGIGAKMELDVAGKCDRRAHNEALPLLTLKEGRL*
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mRNA from alignment at H-paniculata_contig4682:183..6364-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4682.11661.1 ID=mRNA_H-paniculata_contig4682.11661.1|Name=mRNA_H-paniculata_contig4682.11661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6182bp|location=Sequence derived from alignment at H-paniculata_contig4682:183..6364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGATTTTACATTGGTCCACTTGATTTTTAGAATGAAGTTACTGGAGTT
GATCAAGGCTTGAAGGAAGATTATTCAGAATTGGCTACCTTAGCCTATTG
TTGGATTTTAATTTAGGAAGAATTTCCCTAAACTTTCTGTAAAGAGAATG
TTGAACATTGTGTAATATTCTCTAAATAAATTATTATAACAAAACAAGGA
TTCAACACCTGAAATAAGAAAATTCTTTCTTTCCACTCCAGAGTGTGCAA
CCACTGTTAACACCACTCGGAAGCGCACAAGAACATTCTTATCTAAGTTT
TTGCTCTCTCCAAGACGTGTCCTTTATTTAACCCCAACCTCCCCTCAGTA
AGACCCTTCCTGCCCTGCCCCCCCCCCGTCCCTCGATGCCTTCCCTTGCT
TCAACACTTCTTTCGGGAGTCCCATACAACATGTAGTTGTAGAGTACTAC
TTTTGACGCGAGACTAACGGCTTCTTCTGCGCGTACGCACGCGTGCTGCT
GTGCGAGGAAACAGGCACCCGTTTCTGCTGTCGAATCTGGCGGGGGCAAT
TTTAGCCTTGAGCATTCTGCCCATAGTCGTGATCTATTTGCCGGAGACCA
AGGATCTGAAGAAACGCGTTACCGAAGAACGCGAAGCGAGAGGAAGGTGG
TGCGCGACGGAAGGGTTGGTTCTGAGTGCTGTTTCTTTTGGCTCGGATAA
GAGTAAGGTCGAGGTGGAAGTGAGCGGGCTAAGCCTTTGTTTTAGCGTGC
GCGGGTAAGAGTTGTTGAGTTGCGCTCGAGGTTTGGGTTGGAGTTAGCCT
TAGGGCGCACGTGCACAGCCCCTGACCTTGGCCGCTGGTGTTTTCCCTTA
CTAGCCGTACGCTCGGGAGGTGGGCTCTTTGGCATTCCCTGGCATTTTTC
ACCGTATGATGAATATTTAAATTCAGTTACACTTGCCTCATGGCGATGCC
ACAGACAGACCTTTAAAGCCTTTCCTTTTATTTTGTCAGCAACAGAGAGA
GAGAGCCTACCGGAAACTTTTTTTTTTTCCTTTCGTTAATGAGTTGCTCT
GTTGTGCCGTTTATTTAATGTTGTTGTTGCTGCTGCTGCCGTTTTTGTTC
TCGTCATTTGCTGGTGGCGCCAGCAACGGGGGTCGTTGCCAGGCGTGCGA
CGACAACGCTAGCAATAGTTACAATGGCCAAATCTGTAATAGTACACACA
AGACGCTAAAGCCGTCAGTGTATTCGCCATATCCAGCTGGTGTTAGCAAC
AATAACAACATCAACAGCAACAAACGAGGAGCTGGCGGCCAGGGCGGGAG
CAACAGTCTGTCCGTCGGTTCGGCGGCGGGAAGAGGCGTGACGATCGACG
CGAAGGGATCAAGACGACCTCAGAGCGTTTCCATAGCAGCGCATTACTCT
AACACGCGTTCTGGCGTCAAGAGAACTGCCATGCACGAAAGCGATCCAAA
CGCGAAGAGGAAAATCGATCGGAGAGTTTCTGGTGGTGTTGGTACCGGTG
GTGGTGGTGGTGATGATAATGATTATGGTGGTGGTGGTAGGGATGGTTGC
TGCGCCGGCGACCGGGGGCGGTTGAAAGTAGCCCAGACCCTGTCTGTCAA
TTCCACGGTTAACGGAAGCGTGTCGTCGTCGTCGTCGTCATTGCCACGAT
CATTATCATCTATTACAACTACTGCTCCTCCTGCTTTCGGCGGTCGAGCT
CGTGGCCAGTGCACCACGCCCGGGGGCTGTAGTAATATTGATGGTGATGA
TTATGACGATGGCCATGCTACTGACGGAGACCACGGCGTGAGTGTGTTAA
CTCGGAGCACTGCGGTTACAACCGACATTAGTTCCCGTGGTCGCCAGGCG
GGGGGGCGGGCGGCGCGCGAGAGCTCGGGGCGTCAACTTCGAGGAAGGGA
AAATCTCGCCCCCGCCGCCGCTGCTACCGCTGGGAATCGTGGCGGAAACG
TGTTGGGATGCTGCGGACCCGACGCTCTGATCAACGCCGGCTACGTGAAG
GTGCTCCTGGTGATGATCTGCTTTATGTCGGTGAGAGCCGTGGATGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTATGTATGTTGTTTGCTGCGGCAAGGGACGGCTTAAAGGCTCGTTTCG
CGTTTTGTTGAAAATGGTGCGATAATTGTTTCCCGGCGGAGTTGGGGACG
GGCTTGAAGGAGGTGGGGCAGGGGAATGGCTGGGGGGCGACGTGTAGGGA
ATTGTTGTGCGGCCTGAAAGTGACCCTACCCATTGCGTAAACATACAGTC
GTCCGAGACGACTGATTGGGCGATGGTACCCTTTTAACATTAAAATCCCG
ACCTCTGACAGGTGTCGAGCTGAAGAAGGGGTCAGCTGTAATATACAACA
TTCATGCATGCACACGGCCTGAAAACGTAAAGTATTAACAGGATCGCAAA
GACTGGGAACTTTGTTTTCGATGAGGGTATGGGGGTCTCAAGTAGTCGTT
GGGGACGACTAATTGGTCGTTGTATGTGTGAAATGTTTATTGTTTCAGCT
ACTACAGATGTGGGTTATTTCTTGAGGTTTTGTTTGCAACCCTCATCGCC
ACTGCTCCCCCTGTTCTTGGCTGTGTGCACCGCCGGCGTCATGATTGATC
GGCGGGTCTTCGCCAATAGGTTGCGAATATAGGTCTGGACGAGATCTATC
CGCTTTGGGCGCTCAGCACGACTGCTGTCGGCGGTCTAAACTGGACGACA
TCTCAGATAGGGCAGGTATCGTGCTGTGTGAACCTAGTTGTTCAGTAGTG
CGAAAATAGAGGACTTGATGTATTACCCGTCTGCACAAAGAGAGGAAATA
CATCAAGTTTTTGATGTTTACTCAAGGCTGGTTTGCCACATTTGTTTCAT
CTACTTGATAGCCTAAGTGTCGTCTCATTGTGAGTGCTTTAGTCGCTCAT
GGCAACCACAATATCCCCTCTATTTATTGACTGAGCTCGTAGTAGAACGG
GACGACATGTCATGTGCGTCGGAGAGCGCTGTGCTTTTTTGATTGCATCA
GACAAACATTTACGTCGCAGTGGCGGAGATGAGGGGTAGATGAAGCTTCG
TGTGGGCGTTTCGTCGGAATATGACTAATCAGTCGGAGTGTGAACGTTTT
GTCGTTTGTTTTCGATATCCAGTAGGTGAGTTTGTTTTCGGGCAACAGGT
ATTGTGCCAACGCATGGTTTATGCGTGCGGTTGTGGAGTGATAAAAATCA
ATGTGCTTCCGTGTCAACAAACACGAACACAGGAGAGGCGGGCTCGCGTT
TCTTTTGATCTCTAGCTCAATGTGTTTTACAGTAGTACCGCAGGACTTGT
TTCCATTTGAGCAACCCTCATCCCATCTGAGACTGCGGCGTTGCCAACAG
TTTGCAAATCGGTTGTAAATCCCTTCTCTGTCCCGATGCAGGTAGTTACC
ACTCTCGTTTCACGATTTGGACACTAAAGAAAAAAACCCGTAGCACCGCC
ACCTTCGATTACAGACAGATAAACATGCTCATGCTCATGAAACCAGGGTG
AGCAGACAGACTCCCTCTCCCGCCCTCCCCATTCTTTCCCATTCCTTGTT
TTGGTTCGTTTCAGCTGCAACCTAGTTAATAATCGTATTTTTTTCGGCCT
TGGACCATCAAATCACCCTGTCGCGTGTTTTTCTTCGTCTGCATTGTACA
TGCGCGCCAGTCGCTGGGTATCGCGGGGGCTGGCTTGGCCGTGTACGACT
TCGTGTTGTTTCCACGATTAGTCCAGAGGTTGGGGATCGTGACCGTGCAA
CGCGCCAGCGCTATCTTAGCCATTCCGGTGGTGCTGGCCATTCCCAACTC
GAAGGCCATCGCCGGCGAGGCCGGCACGTTCGAGCTGTTTGTGTTCCTCA
TGTTCATTCTCGCGTGCTGCACTAGTGCGGTAAGTACTGTAATAAGCGCG
GTAATAACGGGGAAATTTACGGGTTGGGCGCCGCCGGGCTCCACGACATC
CCCGGCTATTGTTATTGTATTAATAATCCCCAAATGAACAACCAGGCGAA
AATCTAACGCCGATGATGTGGTCACGAGGGTAAATGTGACTGTGAGGATA
GGGAGCTATCACTATTCAGACGTACAGTGTAGACAGTGATATATTCAGCA
TAGAAACGGAGTTGGCCCAGCTCTGTTCACGGCGACTGAAGCTCTCCGAC
TTTTTGTTGGTCTGGATCATTTTTAGTTCCGAAATAGCCTCAAAAAGTAG
TTTTTGCTCATTGTATTCGTGGTTTTATGGGGTCCTGGTTTAGTGCATCA
CTCCCCGCGCCCCTCTGTGATGCACGTGAAATACGCTCGCCTCTTTTGTT
ACACGTTTGTGGACAACACCAGAGGCTGTGATTTTATGTCGTCCGAAAGG
GCTTTTTATCGAGGTACCCCTGTCAACACATAGCCTGCCCTCTCCCACAG
TACAGTGTAATTGCACGATGTTTTTTTCTCTCAAGGCGATGGACATTTAA
AGCTCTTTGTCATTCGGGTAGTACGCTGTAATTTCCTGTCCTGCCCACGC
TGCTGGTCGTGACCCGATAAAATCAATCATTTTTTGGTCACTAAGAAGAA
AGAGAAAGAGAAAGATAGATAGATAGATAGATAAGTCAGAGACAAGCAGA
CACAGAAGAGACAGACGGAGAGAACAATTTCCTGATGTTCTTTTGTACTG
CAGCCTTTTCTATTGGCTACCAGAGGCAGAGGGCCGGTAGCGAGGGAAAG
GGGAAATACAAGGGTAGTGTACAGTACAGTGATAAAAATTATTATGGTGG
TGGGCACAAGCTGCTACTATCGATGTAATTTACGGTTGGTGGATAGTACA
GCATGTAACATGGGGGGTTGTGATGCGTAATGTAGAAAGTTTTACGTATG
AGAGTCTGCATAGTAGTAAGTCCAAAGCACACATGGATAAGCTTAGTATC
TTAGTATATTGGGAAGCGTCTATTAGATCGCACTTCACATTTGATAAATA
CAAATAGTATAGTATGGTCCACATACAACTTGCAGTAAATACATTAACCA
TCAACCATCGTAAATAAATGTAAAGCACATTTCCACTATATGCAACTATT
CTAATGTAGGTACGCACGTGTGCTGTATCGGGTATACAACGAAAAAAAAA
ACTATTTGAATAATAATGAAATAATCGTAATAAAAGGACATCGTGGACTT
TCTTTGGCGGGTGGTTTTCCAATTTTCAAAAAGAGATCGATGATTCTCCC
ATACGAATGATACGATAGACCGGATGGAAGCATGTGTGGCGCAAATTGAC
TCATTTGTGTTACCATAATACTACTTGGGTATTTCATCTAATTTTGAATC
GGTGGTTTTGCTCGAACTCAGTCACGCGTGTCACCAACCAACGTGAAAAC
GAGAGCAACTGTCCTCCACCGAAGTTGAGTGCTGTTCATATTTACATTTG
GCCCTGGCTTTATGTATGAGAGAAGCGTTCCAATATTTTCTTGTGGTCGT
GCCTTGTGTCCCCTCGCGCGCGTCCATGTGTGTGTGTGTGGTCTGCTTTC
TTTTCTTTTTTTTTCCCAACCAGCTGATGGCCTCTCTGACAATTGCGTCA
ACAAGCATAGTACCAGCGGAGAGACGCGGCCAGCTGGGTGGACTCTTCAT
GACCGCCGAGAGCTTCGGGAGGTGTCTGGGTCCTACGGGCTTCGCAACGA
TCTACGCATGGTCGATCTCATCCGATGCGCCGGCTCGCGTAAACCACCGT
CTTGTTTTCACTCTTGTCGCCCTCATATATTTGCTGTTGTTGGCCTTGGC
GTGGCGCACGTTGACGTTAGAGACGCTTCAGCTCGCCCCCCCACCCCCGG
TTTCATGGCGAGTCGGACGCCTAGTGCGGGGCATCGGTGCGAAGATGGAA
CTTGATGTTGCTGGGAAGTGTGACCGGAGGGCTCACAATGAGGCTTTGCC
ACTTCTCACGCTGAAGGAAGGGCGATTGTGATGGTGTTTTTTTGTGCTTG
AACTAACTGAAACGTGAAATGTGTGTATGTGTGTGTGTGTAGGTATGTGT
TTGTTTGTTTGTGTGTGTGTATGTATGCGTGTATTTGTTGGTATTTATGT
ACATAAATATATAAAACGTTGAGCAAAACGCCGCTGGAACAAATGATGGG
GTATAACTTGTGCGATAGATGAGATGAAGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4682:183..6364-

>mRNA_H-paniculata_contig4682.11661.1 ID=mRNA_H-paniculata_contig4682.11661.1|Name=mRNA_H-paniculata_contig4682.11661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2664bp|location=Sequence derived from alignment at H-paniculata_contig4682:183..6364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGAAAGCGATCCAAACGCGAAGAGGAAAATCGATCGGAGAGTTTC
TGGTGGTGTTGGTACCGGTGGTGGTGGTGGTGATGATAATGATTATGGTG
GTGGTGGTAGGGATGGTTGCTGCGCCGGCGACCGGGGGCGGTTGAAAGTA
GCCCAGACCCTGTCTGTCAATTCCACGGTTAACGGAAGCGTGTCGTCGTC
GTCGTCGTCATTGCCACGATCATTATCATCTATTACAACTACTGCTCCTC
CTGCTTTCGGCGGTCGAGCTCGTGGCCAGTGCACCACGCCCGGGGGCTGT
AGTAATATTGATGGTGATGATTATGACGATGGCCATGCTACTGACGGAGA
CCACGGCGTGAGTGTGTTAACTCGGAGCACTGCGGTTACAACCGACATTA
GTTCCCGTGGTCGCCAGGCGGGGGGGCGGGCGGCGCGCGAGAGCTCGGGG
CGTCAACTTCGAGGAAGGGAAAATCTCGCCCCCGCCGCCGCTGCTACCGC
TGGGAATCGTGGCGGAAACGTGTTGGGATGCTGCGGACCCGACGCTCTGA
TCAACGCCGGCTACGTGAAGGTGCTCCTGGTGATGATCTGCTTTATGTCG
ATGCACGAAAGCGATCCAAACGCGAAGAGGAAAATCGATCGGAGAGTTTC
TGGTGGTGTTGGTACCGGTGGTGGTGGTGGTGATGATAATGATTATGGTG
GTGGTGGTAGGGATGGTTGCTGCGCCGGCGACCGGGGGCGGTTGAAAGTA
GCCCAGACCCTGTCTGTCAATTCCACGGTTAACGGAAGCGTGTCGTCGTC
GTCGTCGTCATTGCCACGATCATTATCATCTATTACAACTACTGCTCCTC
CTGCTTTCGGCGGTCGAGCTCGTGGCCAGTGCACCACGCCCGGGGGCTGT
AGTAATATTGATGGTGATGATTATGACGATGGCCATGCTACTGACGGAGA
CCACGGCGTGAGTGTGTTAACTCGGAGCACTGCGGTTACAACCGACATTA
GTTCCCGTGGTCGCCAGGCGGGGGGGCGGGCGGCGCGCGAGAGCTCGGGG
CGTCAACTTCGAGGAAGGGAAAATCTCGCCCCCGCCGCCGCTGCTACCGC
TGGGAATCGTGGCGGAAACGTGTTGGGATGCTGCGGACCCGACGCTCTGA
TCAACGCCGGCTACGTGAAGGTGCTCCTGGTGATGATCTGCTTTATGTCG
GTTGCGAATATAGGTCTGGACGAGATCTATCCGCTTTGGGCGCTCAGCAC
GACTGCTGTCGGCGGTCTAAACTGGACGACATCTCAGATAGGGCAGGTTG
CGAATATAGGTCTGGACGAGATCTATCCGCTTTGGGCGCTCAGCACGACT
GCTGTCGGCGGTCTAAACTGGACGACATCTCAGATAGGGCAGTCGCTGGG
TATCGCGGGGGCTGGCTTGGCCGTGTACGACTTCGTGTTGTTTCCACGAT
TAGTCCAGAGGTTGGGGATCGTGACCGTGCAACGCGCCAGCGCTATCTTA
GCCATTCCGGTGGTGCTGGCCATTCCCAACTCGAAGGCCATCGCCGGCGA
GGCCGGCACGTTCGAGCTGTTTGTGTTCCTCATGTTCATTCTCGCGTGCT
GCACTAGTGCGGTAAGTACTTCGCTGGGTATCGCGGGGGCTGGCTTGGCC
GTGTACGACTTCGTGTTGTTTCCACGATTAGTCCAGAGGTTGGGGATCGT
GACCGTGCAACGCGCCAGCGCTATCTTAGCCATTCCGGTGGTGCTGGCCA
TTCCCAACTCGAAGGCCATCGCCGGCGAGGCCGGCACGTTCGAGCTGTTT
GTGTTCCTCATGTTCATTCTCGCGTGCTGCACTAGTGCGGTAAGTACTCT
GATGGCCTCTCTGACAATTGCGTCAACAAGCATAGTACCAGCGGAGAGAC
GCGGCCAGCTGGGTGGACTCTTCATGACCGCCGAGAGCTTCGGGAGGTGT
CTGGGTCCTACGGGCTTCGCAACGATCTACGCATGGTCGATCTCATCCGA
TGCGCCGGCTCGCGTAAACCACCGTCTTGTTTTCACTCTTGTCGCCCTCA
TATATTTGCTGTTGTTGGCCTTGGCGTGGCGCACGTTGACGTTAGAGACG
CTTCAGCTCGCCCCCCCACCCCCGGTTTCATGGCGAGTCGGACGCCTAGT
GCGGGGCATCGGTGCGAAGATGGAACTTGATGTTGCTGGGAAGTGTGACC
GGAGGGCTCACAATGAGGCTTTGCCACTTCTCACGCTGAAGGAAGGGCGA
TTGTGACTGATGGCCTCTCTGACAATTGCGTCAACAAGCATAGTACCAGC
GGAGAGACGCGGCCAGCTGGGTGGACTCTTCATGACCGCCGAGAGCTTCG
GGAGGTGTCTGGGTCCTACGGGCTTCGCAACGATCTACGCATGGTCGATC
TCATCCGATGCGCCGGCTCGCGTAAACCACCGTCTTGTTTTCACTCTTGT
CGCCCTCATATATTTGCTGTTGTTGGCCTTGGCGTGGCGCACGTTGACGT
TAGAGACGCTTCAGCTCGCCCCCCCACCCCCGGTTTCATGGCGAGTCGGA
CGCCTAGTGCGGGGCATCGGTGCGAAGATGGAACTTGATGTTGCTGGGAA
GTGTGACCGGAGGGCTCACAATGAGGCTTTGCCACTTCTCACGCTGAAGG
AAGGGCGATTGTGA
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