mRNA_H-paniculata_contig468.11653.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig468.11653.1
Unique NamemRNA_H-paniculata_contig468.11653.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: A0A6H5JER8_9PHAE (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 5.100e-57
Identity = 107/137 (78.10%), Postives = 119/137 (86.86%), Query Frame = 3 
Query: 1203 GMGGAGAP--ITAKVMDEAAMSEVQQRETAVRGLLHRDPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPRNNGPLFKWHAKVLEKGGTGCVMRTLVDRRTV 1607
            G  GAGAP  +   V D AAM EVQQRETAVRG+LHRDP GALR++LE PP+FCKDEAVK K+MECV+MVL+GVREDQIENCL+ LS DE D+LVKYVYKGLG+PRNNGPLFKWHAKVLEKGG GCVMRTLV R+TV
Sbjct:  466 GGAGAGAPSKVPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRRSLEDPPVFCKDEAVKAKSMECVLMVLTGVREDQIENCLAGLSLDEMDVLVKYVYKGLGMPRNNGPLFKWHAKVLEKGGPGCVMRTLVSRQTV 602
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: D8LCU1_ECTSI (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU1_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 6.710e-47
Identity = 90/116 (77.59%), Postives = 100/116 (86.21%), Query Frame = 3 
Query: 1215 AGAP--ITAKVMDEAAMSEVQQRETAVRGLLHRDPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPRNNGPLFKWHAKVLE 1556
            AGAP  +   V D AAM EVQQRETAVRG+LHRDP GALRK+LE PPIFCKDEAVK K+ ECV+MVL+GVREDQIENCL+ LS DE D+LVKYVYKGLG+PRNNGPLFKWHAK L+
Sbjct:  243 AGAPSKVPGAVSDPAAMGEVQQRETAVRGMLHRDPGGALRKSLEDPPIFCKDEAVKAKSTECVLMVLTGVREDQIENCLAGLSLDEIDVLVKYVYKGLGMPRNNGPLFKWHAKSLD 358
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: A0A835ZBW9_9STRA (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW9_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.410e-33
Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 3 
Query: 1257 MSEVQQRETAVRGLLHRDPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPRNNGPLFKWHAKVLEKGGTGCVMRTLVDRRTV 1607
            M+ V +RE +VR LLH+D   ALRKALE+PP+  +D+AVKDKN + V+ VL   ++ Q+   ++ LS +E+D L+KYVY+GL  P  NG LF+WHA VLE+GG GCV+R + DRRTV
Sbjct:    1 MAAVAERERSVRSLLHKDLTAALRKALENPPVGTRDKAVKDKNTDVVLDVLGAAKDAQLAPAVAALSAEESDALMKYVYRGLAKPAPNGALFRWHAAVLERGGVGCVVRAVADRRTV 117
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: A0A0C9W0K6_9AGAM (Actin-related protein 2/3 complex subunit 5 n=2 Tax=Boletales TaxID=68889 RepID=A0A0C9W0K6_9AGAM)

HSP 1 Score: 99.0 bits (245), Expect = 1.850e-20
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 3 
Query: 1257 MSEVQQRETAVRGLLHR-DPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPR----NNGPLFKWHAKVLEKGGTGCVMRTLVDRRTV 1607
            +S+ +Q++ AVRG L + D PGAL  AL+ PP     E  K+  ++ VV +L+  +  +I N L +LS D  D L+KY+YKG+G+P     +   L  WH K+ E  GTGC++R + DRRTV
Sbjct:   33 LSDAKQKQVAVRGSLTKGDIPGALSIALDSPPYGPNVEEAKNLTLQTVVSILNSTKSTEIPNVLKSLSQDAQDTLMKYIYKGMGMPGWGDVSGSVLLGWHEKLTEVAGTGCIVRVMTDRRTV 154
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: A0A0C3DGE3_9AGAM (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3DGE3_9AGAM)

HSP 1 Score: 97.8 bits (242), Expect = 4.670e-20
Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 3 
Query: 1257 MSEVQQRETAVRGLLHR-DPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPR----NNGPLFKWHAKVLEKGGTGCVMRTLVDRRTV 1607
            +S+ +QR++AVR  L + D PGAL  ALE+PP     E  K+  ++ VV VL+  +  +I   L +LS D  D L+KY+YKG+G+P     +   L  WH K+ E  GTGC++R + DRRTV
Sbjct:   33 LSDARQRQSAVRSALSKSDIPGALNIALENPPYGPNVEEAKNLTLQIVVSVLNSTKGTEIPQVLKSLSEDAQDTLMKYIYKGMGMPGWGDVSGSVLLAWHEKLTEIAGTGCIVRVMSDRRTV 154
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: A0A058ZHQ4_FONAL (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZHQ4_FONAL)

HSP 1 Score: 96.3 bits (238), Expect = 2.610e-19
Identity = 49/125 (39.20%), Postives = 75/125 (60.00%), Query Frame = 3 
Query: 1242 MDEAAMSEVQQRETAVRGLLHR-DPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPRN--NGPLFKWHAKVLEKGGTGCVMRTLVDRRTV 1607
            +D + ++ +  R T VR LL++ D  G++  A+++PP  C D A+K KN+E V+  LS VR   I   + +L+P++ D LVKY+Y G  +P    +G L  WH K +E GG G + R L  R+TV
Sbjct:   47 VDASVVASINDRATNVRTLLNKGDAAGSVAVAVDNPPFNCNDAALKAKNLETVMSSLSAVRAADIPAVIKSLTPEQVDNLVKYIYAGFAIPSGQYSGHLLLWHEKAIEVGGLGSITRVLTSRKTV 171
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: A0A409VB11_9AGAR (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409VB11_9AGAR)

HSP 1 Score: 94.0 bits (232), Expect = 1.090e-18
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 3 
Query: 1257 MSEVQQRETAVRGLLHR-DPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPR----NNGPLFKWHAKVLEKGGTGCVMRTLVDRRTV 1607
            + +V+QR+ AVR LL + D  GAL   LE+ P     +  K+ N++ ++ VL+  +   I N + TLSPD  D L+KY+YKG+G+P     +   L  WH K+ E  G GC++RT+ DRRTV
Sbjct:   35 LDDVRQRQGAVRSLLAKNDISGALSVILENAPYGPNVDDAKNLNLQTLLTVLNTTKSTDITNIIKTLSPDAQDTLMKYLYKGMGLPGWGDISGSVLLGWHEKLTEVAGVGCIVRTMTDRRTV 156
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: A0A197JPH3_9FUNG (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JPH3_9FUNG)

HSP 1 Score: 92.4 bits (228), Expect = 3.650e-18
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 3 
Query: 1260 SEVQQRETAVRGLLHR-DPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPR--NNGPLFKWHAKVLEKGGTGCVMRTLVDRRTV 1607
            ++V  R   VR LL R +  GAL  +L++PP      A K +N + V+ VL+ ++   +   + +LSP+E D+L+KY+Y G+  P   N+G L  WH K+ E  G GC++R + DRRTV
Sbjct:   37 AQVNSRAQEVRSLLQRGNTSGALSTSLQNPPYGAPFHAAKARNTQTVMEVLNSIKVADVPQLVKSLSPEEQDVLMKYLYAGMAAPEQNNSGHLLAWHEKLTEVAGQGCIVRVITDRRTV 155
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: A0A0L0DJS4_THETB (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DJS4_THETB)

HSP 1 Score: 92.0 bits (227), Expect = 4.120e-18
Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 3 
Query: 1257 MSEVQQRETAVRGLLHR-DPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPRNNGPLFKWHAKVLEKGGTGCVMRTLVDRRTV 1607
            M+ V+ +E  +  +L R D  GAL  A++ PP    D  V+ +    V  +L GVR+ +IE  +++ SPDE D+L+K+VY+G+ V   +G L KWHA + +  G G ++R L DR +V
Sbjct:   31 MARVEAKEAEINSMLSRGDHAGALAAAMDQPPTDTTDADVRQRFGLLVASILGGVRDSEIETAVNSFSPDEQDLLMKFVYRGMAVGTESGKLLKWHAALFKACGHGAIVRALSDRASV 148
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BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Match: V2YMX6_MONRO (Actin-related protein 2/3 complex subunit 5 n=2 Tax=Moniliophthora roreri TaxID=221103 RepID=V2YMX6_MONRO)

HSP 1 Score: 91.7 bits (226), Expect = 6.430e-18
Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = 3 
Query: 1254 AMSEVQQRETAVRGLLHR-DPPGALRKALEHPPIFCKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLGVPRNNGP-LFKWHAKVLEKGGTGCVMRTLVDRRTV 1607
            A+++ +Q   AVR  L + D  GAL   L+  P     E  K  +++ ++ +L+  + + I N L +LSPD  D L+KY+YKG+ +  +NG  L  WH K+ E  GTGC++RT+ DRRTV
Sbjct:   34 ALNDAKQATVAVRSALSKNDVVGALSLVLDTAPYGPSAEEAKTVSLQNILTILNSTKSNDISNALKSLSPDAQDTLMKYLYKGMAMADSNGSVLLSWHEKLTEVAGTGCIVRTMTDRRTV 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig468.11653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JER8_9PHAE5.100e-5778.10Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
D8LCU1_ECTSI6.710e-4777.59Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A835ZBW9_9STRA2.410e-3353.85Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A0C9W0K6_9AGAM1.850e-2041.80Actin-related protein 2/3 complex subunit 5 n=2 Ta... [more]
A0A0C3DGE3_9AGAM4.670e-2042.62Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A058ZHQ4_FONAL2.610e-1939.20Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A409VB11_9AGAR1.090e-1840.98Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A197JPH3_9FUNG3.650e-1838.66Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A0L0DJS4_THETB4.120e-1838.14Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
V2YMX6_MONRO6.430e-1839.17Actin-related protein 2/3 complex subunit 5 n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig468contigH-paniculata_contig468:22271..26587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue9.6e-44
Seed eggNOG ortholog2880.D8LCU1
Preferred nameARPC5
KEGG koko:K05754,ko:K14016
KEGG Pathwayko04141,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04141,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000147,GO:0000902,GO:0000904,GO:0001667,GO:0001775,GO:0002009,GO:0002252,GO:0002253,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002443,GO:0002444,GO:0002446,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005826,GO:0005829,GO:0005856,GO:0005885,GO:0005937,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006955,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0009653,GO:0009790,GO:0009825,GO:0009888,GO:0009987,GO:0010026,GO:0010090,GO:0010631,GO:0010638,GO:0012505,GO:0012506,GO:0014812,GO:0014909,GO:0015629,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016331,GO:0016477,GO:0019867,GO:0019898,GO:0021761,GO:0021769,GO:0022607,GO:0023052,GO:0030011,GO:0030027,GO:0030029,GO:0030030,GO:0030036,GO:0030041,GO:0030139,GO:0030141,GO:0030154,GO:0030175,GO:0030424,GO:0030426,GO:0030427,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030900,GO:0031090,GO:0031097,GO:0031143,GO:0031252,GO:0031312,GO:0031315,GO:0031334,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031982,GO:0031983,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0033267,GO:0034314,GO:0034622,GO:0034774,GO:0036230,GO:0038093,GO:0038094,GO:0038096,GO:0040007,GO:0040011,GO:0042119,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043299,GO:0043312,GO:0043332,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044455,GO:0044463,GO:0044464,GO:0044877,GO:0045010,GO:0045055,GO:0045321,GO:0045335,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051258,GO:0051286,GO:0051493,GO:0051495,GO:0051639,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060205,GO:0060322,GO:0060429,GO:0061024,GO:0061645,GO:0061842,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070938,GO:0071840,GO:0071944,GO:0090066,GO:0090130,GO:0090132,GO:0090558,GO:0090626,GO:0097159,GO:0097435,GO:0097458,GO:0097581,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:0098858,GO:0099503,GO:0099568,GO:0099738,GO:0101002,GO:0110053,GO:0120025,GO:0120036,GO:0120038,GO:0150034,GO:1901363,GO:1902903,GO:1902905,GO:1904813
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
EggNOG OGsKOG3380@1,KOG3380@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04812
Exons5
Model size2373
Cds size405
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930393.785631-UTR-H-paniculata_contig468:22270..232351622930393.785631-UTR-H-paniculata_contig468:22270..23235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig468 22271..23235 +
1691481271.530948-UTR-H-paniculata_contig468:22270..232351691481271.530948-UTR-H-paniculata_contig468:22270..23235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig468 22271..23235 +
1622930393.8041995-UTR-H-paniculata_contig468:23312..235521622930393.8041995-UTR-H-paniculata_contig468:23312..23552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig468 23313..23552 +
1691481271.545133-UTR-H-paniculata_contig468:23312..235521691481271.545133-UTR-H-paniculata_contig468:23312..23552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig468 23313..23552 +
1622930393.8822227-UTR-H-paniculata_contig468:25824..265871622930393.8822227-UTR-H-paniculata_contig468:25824..26587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig468 25825..26587 +
1691481271.607262-UTR-H-paniculata_contig468:25824..265871691481271.607262-UTR-H-paniculata_contig468:25824..26587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig468 25825..26587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930393.819114-CDS-H-paniculata_contig468:23552..236271622930393.819114-CDS-H-paniculata_contig468:23552..23627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 23553..23627 +
1691481271.5558865-CDS-H-paniculata_contig468:23552..236271691481271.5558865-CDS-H-paniculata_contig468:23552..23627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 23553..23627 +
1622930393.8363361-CDS-H-paniculata_contig468:24331..244271622930393.8363361-CDS-H-paniculata_contig468:24331..24427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 24332..24427 +
1691481271.569132-CDS-H-paniculata_contig468:24331..244271691481271.569132-CDS-H-paniculata_contig468:24331..24427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 24332..24427 +
1622930393.8572462-CDS-H-paniculata_contig468:24992..251631622930393.8572462-CDS-H-paniculata_contig468:24992..25163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 24993..25163 +
1691481271.5864427-CDS-H-paniculata_contig468:24992..251631691481271.5864427-CDS-H-paniculata_contig468:24992..25163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 24993..25163 +
1622930393.8708165-CDS-H-paniculata_contig468:25761..258241622930393.8708165-CDS-H-paniculata_contig468:25761..25824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 25762..25824 +
1691481271.5986378-CDS-H-paniculata_contig468:25761..258241691481271.5986378-CDS-H-paniculata_contig468:25761..25824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 25762..25824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig468.11653.1prot_H-paniculata_contig468.11653.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig468 23553..25824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig468.11653.1

>prot_H-paniculata_contig468.11653.1 ID=prot_H-paniculata_contig468.11653.1|Name=mRNA_H-paniculata_contig468.11653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MGGAGAPITAKVMDEAAMSEVQQRETAVRGLLHRDPPGALRKALEHPPIF
CKDEAVKDKNMECVVMVLSGVREDQIENCLSTLSPDETDILVKYVYKGLG
VPRNNGPLFKWHAKVLEKGGTGCVMRTLVDRRTV*
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mRNA from alignment at H-paniculata_contig468:22271..26587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig468.11653.1 ID=mRNA_H-paniculata_contig468.11653.1|Name=mRNA_H-paniculata_contig468.11653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4317bp|location=Sequence derived from alignment at H-paniculata_contig468:22271..26587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACACCAAGAAGACCAACGGTACAATGTCGGCGCCGCCCCCGCCCCCCC
CGAGGCGCGGACCACCACCATTGCCAGGGTCTTCACCCCCGCCGCTGCCC
GGATCGGCGCCGCCCCCACTACCTGGATCTGCACCGCCCCCACTACCTGG
ATTTGCACCGCCCCCACTACCTGGATCTGCACCGCCCCCACTACCTAGAT
CTGCGCCGCCCCCGCCACCGATACCTACTTCGGGGCCTCCTCCTATTCCG
GGCACCGCACCACCACCCCTCCCATCGTCTTCTCCCCCGCCCCCGCCGGT
GCCTTCCTACGGCCCTCCTAGGGTACCCCCACCGCCATCTCAATCTCCTC
CACCGTTCTTCCCGGGCACCTCGCCGCCGCCTGTCCCAGGGGTTGCGCCA
CCGCCGCTTCCTCGGACGCAGCCAAGCTACCCGTCTTCCCAGCCGCCCGC
GCCGGCAAGCTACCAACCGCCCGCTCCGCCGCAATCATCCTACCAACCCC
CGGCGCCTCCAGCTGCATCAAGCTATCAACCGCCGGCGCGGTCGGCGTAC
CAGTCTTATCAGCCCCCCCCGCCGGTGCCGCAGGGAGGAGGATACCAACC
TCCGCCGCCACCGGTGCCTACGTCTCATCCACCTCCACCCCCACCGCAGC
AGCAGTCGTCCTACCAACCACCGCCGCCAGTGCCCTCGGCCTATCAGCCG
CCCGCTGTGCCGTCCTACACGCCCCACACCTACGCTGCAACTCCGGCCCC
AAATGTGCCGCTGCGCCATGTAAGCCCCCCTGGTTCTGCTACCCAAGGAT
CGTTGCCGCCACCGCCCTCCGCCGAATCGGTACCGGAATTCCAGCGCAAG
CAACTGCACTCGACCTTCGTAGGGTCGCCTCCGGTGCCCGCCCCCGCGGC
GACGTCGCGGGGATACACTCCGCCGGCCGCCGTAGCCCCGTCGCCCCGGG
CGCCCGTGCGGCAGAGCTATCACCCTCCGGCGCAACAGGGATACACTCCG
CCGACCGCCGTAGCCCCGTCGCCCCGGGCGCCCGTGCGGCAGAGCTATCA
CCCTCCGGCGCAACAGGGATACACTCCGCCGGCCGCCGTAGCCCCGTCGC
CCCGGGCGCCCGTGCGGCAAAGCTATCACCCTCCGGCGCAACAGGGATAC
CAGCCGCCTGTGGCGACGTATACCGCGCCGGCACCCGCGGCGCCTCAGCA
GTATGGCAGTTCGACTTCCCAGGGGCATGCACCCCCTGCGCCTGGCGGCT
ATCAGCCCCCTGCCCCCGCCGCTGTTACGGGCATGGGAGGAGCGGGGGCG
CCCATCACGGCTAAGGTTATGGACGAGGCAGCAATGAGCGAAGTGCAGCA
GAGAGAGGTGAGATGGATGTTGTAATTGATATGACTTACTATCTCCTTCC
TGTCTCTTTTTCTGTTGTTGCCGCCCACGTTTCTTGCGAGCGATTAGCCA
TCGAAATCGATCTAATAAAAACAAAGCTTCGTCTTCCCCGAGGACAGGGT
TAGTGGTCTAACAACTGAAGTATTAAAAACATGAGTACGCCCCCCTCCCC
CCCCCCCCGTCTCTTGCTAGATCGTGTTCTTCTATGTCTCTACCGTCTTG
TAAATCCTGGCCAGAGGGACTTTTCCCACGCGTTGTTTTGGTCATGATGA
GTGTAAGCGTGAACAAGCGTTGAGGGGAGCGCAGTACGTGTGCCACCAAT
TAAAATTCAGGGATACCCACCACCTCTCCCAAAGTTCGTTTTGTACTATC
CAGGACTGGTAGGTGGGTGCCTGCTATATATTGTGCCATGTTGTCGGCAT
GAGGGAGCGTAGTTGGACCGTGAGCTGCAGTGTGTACCGTACTATCGCGT
CCCCTTCTACAGTTGGTCGCTATGTTGCGGTCTGTAGTACCCGCCCTCCC
TGTAGCCCACACGCTCCAAACTACGTCTACGAATTATGTTACCCCCACCT
ACCTCGCGACTCACTCATGCATCTGAATGCTCACGTACATTCTTACGTAC
CATGTCCTACCCGTTCCACCGTCGTTGGCGACTTCTCTCTTGTGCCATTC
GTGTTGTGCAGACGGCGGTACGCGGCCTGCTCCACAGGGACCCTCCCGGG
GCGCTGAGGAAGGCGCTTGAGCACCCGCCCATTTTCTGCAAAGACGAAGC
CGTCAAGGTGATTGAGGGTACTGAAAGTGTAAAGTATGTGTATCGTAGCG
TGTTGTGTTGTGTTCTTGTTGTCCGTCTTCCCCTTCTTCAAGCTCTCCCT
TTCGCCGCCAATTGAATTATCTTCATGATCGACAGTTTGTTTTTGCTTTT
GATTTCAAGTCGAAGTGTATTTGTGAAATCGTCGGGAGTGGCCGACCGTT
CGCCGTAGAAGAGTTGATGCTTGGTCGGAGTAGGCGGGGTAAGTATCACA
CATTAGTAGTGGTTTCGAAAATCGCAGAATGATTTCTTGCCCTGATAGTC
GTTCTAAATAGCAGCCTCCCCACGTACCTTGTTATTCTCTGATTTCTGTT
CGTTTTCTCAACGAAACAATGTTTATTATTTATGCATCTGACATTTAAAG
TAAAATAATCCCCTCGTTGATTTCGAAGACTTGGAGAATGAAAAAACATT
ATCTCGCTTCTCATAGCTCTGATGTCTTCGGTTGTTTCTTCCAACCCTCA
TTGTCGTGACGGAACGCACAATTTGGAGAAAAGTTCACCTCCCCTGTTTG
TTCTATTACTCCCGTTCGTCAGGACAAAAACATGGAGTGTGTGGTGATGG
TGCTGTCGGGCGTCCGTGAAGACCAGATCGAGAATTGCCTGAGCACGCTG
TCGCCGGATGAGACAGATATCCTTGTCAAATACGTCTACAAAGGGTTGGG
CGTTCCTCGAAACAACGGCCCTCTCTTCAAGTGGCATGCCAAGGTGACTG
CCCTCTCTGTCTGGTTCTCTCGCGCTCCGTTCCCCTCTCTGTGCAGCATG
TATGGGGTAATATGACATATTTCAGTTGACAGTAGTTGTACGGGTATCTT
CGCCGGCTCACTAAACACGTTTTTTTCGTGTTAAATCTCCTCTAGGTCCA
AGATTTTCCATCCCAAAACACAACTTTGTCGCGCATGCAATTACTTCCTG
AAATCTGGAAGGTCTCTCTGCTGATTGCACCTGATGTATACACCACCAAC
AAAGATGTGGAACACGTGAGCCACTTCATGCGAGTCAACGTTGAAGTGAG
GGACACCTAATAGAAATATGCGACACAGGAAACATCACAAAATATTCATA
ACGATAAAAACTGAAGGAATAATGGCTATACAAAAATTGATGGCAACATT
GTAATAGAACTAGCATACGAAAGCTAGACGAAATATCTCCAGCAGAAAAA
GTAACGTTTTGCTCTCGTCTTCCAGGGATGGAGAAAAATAAGGGCCCAGG
CCCCCGCTGCCACCGCTGCCACCGCCGCCACCGTTTCAATATCCTTCATT
TTGCATGCTGTCTTGTGGGCGTGCAACCATGAAATACACAGGTTTTGGAG
AAGGGTGGCACCGGCTGCGTTATGCGCACGCTCGTAGACAGGCGGACCGT
TTGATGATCTCATGTGGTGGTATGGGATTGATGGGATCGACAACGTTGCT
TACTGCCTTTCGTTTTTTCCAAGGAACGTGCAAGTAGCGGTTAGGTGTTG
TCATTCGCATTTTTGTCTTCTTGTCTTTCGTATGTATCGCCCATGAGGAA
TACACAAAGGGTCTGATCATGTTTTGTGCATATGGGTAGCAGCGCGCTCG
ATTATGCAGAAATCAGGGTTTTCATTTTCAGGGAGGGGGCAGTGAAGGTC
ACTGAGAATGGACAAGTAAGGGAGGGCTCTTTGGAAGATAACAATATTCA
TTAGATAGCCCTGTCCTATTATAGTACTGTGGTTGCGTTGTAGGCGGTAA
AAGGGGCGTTAGTATCTCATGTATGCATGTGTGCGTGTTCAGTTGTGAAT
CGCGTCCTCCTCTATTTCGTGAAACTTGCAGCAGAGTAAAAGGTCTGGTG
CCAGTCTCGTTTGGGGGCCGAGAGGAGGGTGGGGTTGCGTGTGTTGCTTG
TCGTAAAGGCGATTTTGTGTGGAGTTCAAGTGCAGCTGCGTGCGTGTACC
GTGTAATTCTCTGATCTGAGTTACTACAGGCAGGGGCACGGTGTGGTAAC
ACGTCCTAAAGTTCATTTCTTTTTCGTAGTTTTACTGTACAAGCACATGT
CCTTAGCGGCGTCGCAAGGTTTAGATGGGGCGGAGAGGCGGGGGGATGGG
CCGGTTCAAATGGTAATAATGATCATTTGAAGCGTTCACCGTTTGCATCG
AGACTTCGATTGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig468:22271..26587+

>mRNA_H-paniculata_contig468.11653.1 ID=mRNA_H-paniculata_contig468.11653.1|Name=mRNA_H-paniculata_contig468.11653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig468:22271..26587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGAGCGGGGGCGCCCATCACGGCTAAGGTTATGGACGAGGCAGC
AATGAGCGAAGTGCAGCAGAGAGAGATGGGAGGAGCGGGGGCGCCCATCA
CGGCTAAGGTTATGGACGAGGCAGCAATGAGCGAAGTGCAGCAGAGAGAG
ACGGCGGTACGCGGCCTGCTCCACAGGGACCCTCCCGGGGCGCTGAGGAA
GGCGCTTGAGCACCCGCCCATTTTCTGCAAAGACGAAGCCGTCAAGACGG
CGGTACGCGGCCTGCTCCACAGGGACCCTCCCGGGGCGCTGAGGAAGGCG
CTTGAGCACCCGCCCATTTTCTGCAAAGACGAAGCCGTCAAGGACAAAAA
CATGGAGTGTGTGGTGATGGTGCTGTCGGGCGTCCGTGAAGACCAGATCG
AGAATTGCCTGAGCACGCTGTCGCCGGATGAGACAGATATCCTTGTCAAA
TACGTCTACAAAGGGTTGGGCGTTCCTCGAAACAACGGCCCTCTCTTCAA
GTGGCATGCCAAGGACAAAAACATGGAGTGTGTGGTGATGGTGCTGTCGG
GCGTCCGTGAAGACCAGATCGAGAATTGCCTGAGCACGCTGTCGCCGGAT
GAGACAGATATCCTTGTCAAATACGTCTACAAAGGGTTGGGCGTTCCTCG
AAACAACGGCCCTCTCTTCAAGTGGCATGCCAAGGTTTTGGAGAAGGGTG
GCACCGGCTGCGTTATGCGCACGCTCGTAGACAGGCGGACCGTTTGAGTT
TTGGAGAAGGGTGGCACCGGCTGCGTTATGCGCACGCTCGTAGACAGGCG
GACCGTTTGA
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