mRNA_H-paniculata_contig468.11654.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig468.11654.1
Unique NamemRNA_H-paniculata_contig468.11654.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig468.11654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig468contigH-paniculata_contig468:22296..23321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1026
Cds size1026
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930393.4623265-CDS-H-paniculata_contig468:22295..233211622930393.4623265-CDS-H-paniculata_contig468:22295..23321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 22296..23321 +
1691481271.3808334-CDS-H-paniculata_contig468:22295..233211691481271.3808334-CDS-H-paniculata_contig468:22295..23321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig468 22296..23321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig468.11654.1prot_H-paniculata_contig468.11654.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig468 22296..23321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig468.11654.1

>prot_H-paniculata_contig468.11654.1 ID=prot_H-paniculata_contig468.11654.1|Name=mRNA_H-paniculata_contig468.11654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=342bp
MSAPPPPPPRRGPPPLPGSSPPPLPGSAPPPLPGSAPPPLPGFAPPPLPG
SAPPPLPRSAPPPPPIPTSGPPPIPGTAPPPLPSSSPPPPPVPSYGPPRV
PPPPSQSPPPFFPGTSPPPVPGVAPPPLPRTQPSYPSSQPPAPASYQPPA
PPQSSYQPPAPPAASSYQPPARSAYQSYQPPPPVPQGGGYQPPPPPVPTS
HPPPPPPQQQSSYQPPPPVPSAYQPPAVPSYTPHTYAATPAPNVPLRHVS
PPGSATQGSLPPPPSAESVPEFQRKQLHSTFVGSPPVPAPAATSRGYTPP
AAVAPSPRAPVRQSYHPPAQQGYTPPTAVAPSPRAPVRQSYH
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mRNA from alignment at H-paniculata_contig468:22296..23321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig468.11654.1 ID=mRNA_H-paniculata_contig468.11654.1|Name=mRNA_H-paniculata_contig468.11654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig468:22296..23321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGCGCCGCCCCCGCCCCCCCCGAGGCGCGGACCACCACCATTGCC
AGGGTCTTCACCCCCGCCGCTGCCCGGATCGGCGCCGCCCCCACTACCTG
GATCTGCACCGCCCCCACTACCTGGATTTGCACCGCCCCCACTACCTGGA
TCTGCACCGCCCCCACTACCTAGATCTGCGCCGCCCCCGCCACCGATACC
TACTTCGGGGCCTCCTCCTATTCCGGGCACCGCACCACCACCCCTCCCAT
CGTCTTCTCCCCCGCCCCCGCCGGTGCCTTCCTACGGCCCTCCTAGGGTA
CCCCCACCGCCATCTCAATCTCCTCCACCGTTCTTCCCGGGCACCTCGCC
GCCGCCTGTCCCAGGGGTTGCGCCACCGCCGCTTCCTCGGACGCAGCCAA
GCTACCCGTCTTCCCAGCCGCCCGCGCCGGCAAGCTACCAACCGCCCGCT
CCGCCGCAATCATCCTACCAACCCCCGGCGCCTCCAGCTGCATCAAGCTA
TCAACCGCCGGCGCGGTCGGCGTACCAGTCTTATCAGCCCCCCCCGCCGG
TGCCGCAGGGAGGAGGATACCAACCTCCGCCGCCACCGGTGCCTACGTCT
CATCCACCTCCACCCCCACCGCAGCAGCAGTCGTCCTACCAACCACCGCC
GCCAGTGCCCTCGGCCTATCAGCCGCCCGCTGTGCCGTCCTACACGCCCC
ACACCTACGCTGCAACTCCGGCCCCAAATGTGCCGCTGCGCCATGTAAGC
CCCCCTGGTTCTGCTACCCAAGGATCGTTGCCGCCACCGCCCTCCGCCGA
ATCGGTACCGGAATTCCAGCGCAAGCAACTGCACTCGACCTTCGTAGGGT
CGCCTCCGGTGCCCGCCCCCGCGGCGACGTCGCGGGGATACACTCCGCCG
GCCGCCGTAGCCCCGTCGCCCCGGGCGCCCGTGCGGCAGAGCTATCACCC
TCCGGCGCAACAGGGATACACTCCGCCGACCGCCGTAGCCCCGTCGCCCC
GGGCGCCCGTGCGGCAGAGCTATCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig468:22296..23321+

>mRNA_H-paniculata_contig468.11654.1 ID=mRNA_H-paniculata_contig468.11654.1|Name=mRNA_H-paniculata_contig468.11654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at H-paniculata_contig468:22296..23321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGCGCCGCCCCCGCCCCCCCCGAGGCGCGGACCACCACCATTGCC
AGGGTCTTCACCCCCGCCGCTGCCCGGATCGGCGCCGCCCCCACTACCTG
GATCTGCACCGCCCCCACTACCTGGATTTGCACCGCCCCCACTACCTGGA
TCTGCACCGCCCCCACTACCTAGATCTGCGCCGCCCCCGCCACCGATACC
TACTTCGGGGCCTCCTCCTATTCCGGGCACCGCACCACCACCCCTCCCAT
CGTCTTCTCCCCCGCCCCCGCCGGTGCCTTCCTACGGCCCTCCTAGGGTA
CCCCCACCGCCATCTCAATCTCCTCCACCGTTCTTCCCGGGCACCTCGCC
GCCGCCTGTCCCAGGGGTTGCGCCACCGCCGCTTCCTCGGACGCAGCCAA
GCTACCCGTCTTCCCAGCCGCCCGCGCCGGCAAGCTACCAACCGCCCGCT
CCGCCGCAATCATCCTACCAACCCCCGGCGCCTCCAGCTGCATCAAGCTA
TCAACCGCCGGCGCGGTCGGCGTACCAGTCTTATCAGCCCCCCCCGCCGG
TGCCGCAGGGAGGAGGATACCAACCTCCGCCGCCACCGGTGCCTACGTCT
CATCCACCTCCACCCCCACCGCAGCAGCAGTCGTCCTACCAACCACCGCC
GCCAGTGCCCTCGGCCTATCAGCCGCCCGCTGTGCCGTCCTACACGCCCC
ACACCTACGCTGCAACTCCGGCCCCAAATGTGCCGCTGCGCCATGTAAGC
CCCCCTGGTTCTGCTACCCAAGGATCGTTGCCGCCACCGCCCTCCGCCGA
ATCGGTACCGGAATTCCAGCGCAAGCAACTGCACTCGACCTTCGTAGGGT
CGCCTCCGGTGCCCGCCCCCGCGGCGACGTCGCGGGGATACACTCCGCCG
GCCGCCGTAGCCCCGTCGCCCCGGGCGCCCGTGCGGCAGAGCTATCACCC
TCCGGCGCAACAGGGATACACTCCGCCGACCGCCGTAGCCCCGTCGCCCC
GGGCGCCCGTGCGGCAGAGCTATCACATGTCGGCGCCGCCCCCGCCCCCC
CCGAGGCGCGGACCACCACCATTGCCAGGGTCTTCACCCCCGCCGCTGCC
CGGATCGGCGCCGCCCCCACTACCTGGATCTGCACCGCCCCCACTACCTG
GATTTGCACCGCCCCCACTACCTGGATCTGCACCGCCCCCACTACCTAGA
TCTGCGCCGCCCCCGCCACCGATACCTACTTCGGGGCCTCCTCCTATTCC
GGGCACCGCACCACCACCCCTCCCATCGTCTTCTCCCCCGCCCCCGCCGG
TGCCTTCCTACGGCCCTCCTAGGGTACCCCCACCGCCATCTCAATCTCCT
CCACCGTTCTTCCCGGGCACCTCGCCGCCGCCTGTCCCAGGGGTTGCGCC
ACCGCCGCTTCCTCGGACGCAGCCAAGCTACCCGTCTTCCCAGCCGCCCG
CGCCGGCAAGCTACCAACCGCCCGCTCCGCCGCAATCATCCTACCAACCC
CCGGCGCCTCCAGCTGCATCAAGCTATCAACCGCCGGCGCGGTCGGCGTA
CCAGTCTTATCAGCCCCCCCCGCCGGTGCCGCAGGGAGGAGGATACCAAC
CTCCGCCGCCACCGGTGCCTACGTCTCATCCACCTCCACCCCCACCGCAG
CAGCAGTCGTCCTACCAACCACCGCCGCCAGTGCCCTCGGCCTATCAGCC
GCCCGCTGTGCCGTCCTACACGCCCCACACCTACGCTGCAACTCCGGCCC
CAAATGTGCCGCTGCGCCATGTAAGCCCCCCTGGTTCTGCTACCCAAGGA
TCGTTGCCGCCACCGCCCTCCGCCGAATCGGTACCGGAATTCCAGCGCAA
GCAACTGCACTCGACCTTCGTAGGGTCGCCTCCGGTGCCCGCCCCCGCGG
CGACGTCGCGGGGATACACTCCGCCGGCCGCCGTAGCCCCGTCGCCCCGG
GCGCCCGTGCGGCAGAGCTATCACCCTCCGGCGCAACAGGGATACACTCC
GCCGACCGCCGTAGCCCCGTCGCCCCGGGCGCCCGTGCGGCAGAGCTATC
AC
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