mRNA_H-paniculata_contig1182.1165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1182.1165.1
Unique NamemRNA_H-paniculata_contig1182.1165.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1182.1165.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.240e-32
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = -2 
Query:  108 GLVRSGLSRKFVRSLIRHLNLRADSRQREDLRSMVETLKCVANQPGVDMKQELKREAVSLLGPELAREAFEASLSETRTEFLRQRT 365
            G +RSGLSRKFVRSL+RHLN+RADSRQRE+LRSMVETLK  ++  GVDMKQE+KREAVSLLGPELAREAFEASLSETR EF RQR+
Sbjct:  308 GGMRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETRNEFHRQRS 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1182.1165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE2.240e-3282.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1182contigH-paniculata_contig1182:3955..4320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928892.642283-CDS-H-paniculata_contig1182:3954..43201622928892.642283-CDS-H-paniculata_contig1182:3954..4320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1182 3955..4320 +
1691480658.9034994-CDS-H-paniculata_contig1182:3954..43201691480658.9034994-CDS-H-paniculata_contig1182:3954..4320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1182 3955..4320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1182.1165.1prot_H-paniculata_contig1182.1165.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1182 3955..4320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1182.1165.1

>prot_H-paniculata_contig1182.1165.1 ID=prot_H-paniculata_contig1182.1165.1|Name=mRNA_H-paniculata_contig1182.1165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
AAAAAAAAAAAAARPPPIAVVAAAAASAAAAEAAATVRWRKNSVRVSDRE
ASNASRASSGPRRDTASRLSSCFISTPGWLATHLSVSTIDRRSSLCRESA
RRLRWRIRLRTNLRDNPERTSP
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mRNA from alignment at H-paniculata_contig1182:3955..4320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1182.1165.1 ID=mRNA_H-paniculata_contig1182.1165.1|Name=mRNA_H-paniculata_contig1182.1165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig1182:3955..4320+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCGGCTGCCGCAGCCGCCGCCGCCGCCGCCGCCGCTCGTCCCCCCCC
AATTGCAGTAGTCGCGGCTGCCGCTGCCTCTGCGGCGGCAGCGGAGGCTG
CAGCAACGGTACGTTGGCGCAAGAATTCAGTGCGCGTCTCGGACAGGGAA
GCCTCGAACGCCTCGCGCGCGAGTTCGGGTCCCAGGAGGGACACGGCCTC
GCGCTTGAGTTCTTGCTTCATATCGACTCCCGGTTGGTTGGCGACGCACT
TGAGTGTCTCCACCATCGATCGGAGGTCTTCTCTCTGTCGTGAGTCTGCC
CGGAGATTGAGATGGCGGATCAGACTCCGGACGAATTTACGTGACAATCC
AGAGCGGACGAGTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1182:3955..4320+

>mRNA_H-paniculata_contig1182.1165.1 ID=mRNA_H-paniculata_contig1182.1165.1|Name=mRNA_H-paniculata_contig1182.1165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig1182:3955..4320+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCGGCTGCCGCAGCCGCCGCCGCCGCCGCCGCCGCTCGTCCCCCCCC
AATTGCAGTAGTCGCGGCTGCCGCTGCCTCTGCGGCGGCAGCGGAGGCTG
CAGCAACGGTACGTTGGCGCAAGAATTCAGTGCGCGTCTCGGACAGGGAA
GCCTCGAACGCCTCGCGCGCGAGTTCGGGTCCCAGGAGGGACACGGCCTC
GCGCTTGAGTTCTTGCTTCATATCGACTCCCGGTTGGTTGGCGACGCACT
TGAGTGTCTCCACCATCGATCGGAGGTCTTCTCTCTGTCGTGAGTCTGCC
CGGAGATTGAGATGGCGGATCAGACTCCGGACGAATTTACGTGACAATCC
AGAGCGGACGAGTCCAGCCGCGGCTGCCGCAGCCGCCGCCGCCGCCGCCG
CCGCTCGTCCCCCCCCAATTGCAGTAGTCGCGGCTGCCGCTGCCTCTGCG
GCGGCAGCGGAGGCTGCAGCAACGGTACGTTGGCGCAAGAATTCAGTGCG
CGTCTCGGACAGGGAAGCCTCGAACGCCTCGCGCGCGAGTTCGGGTCCCA
GGAGGGACACGGCCTCGCGCTTGAGTTCTTGCTTCATATCGACTCCCGGT
TGGTTGGCGACGCACTTGAGTGTCTCCACCATCGATCGGAGGTCTTCTCT
CTGTCGTGAGTCTGCCCGGAGATTGAGATGGCGGATCAGACTCCGGACGA
ATTTACGTGACAATCCAGAGCGGACGAGTCCA
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