mRNA_H-paniculata_contig46708.11639.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46708.11639.1
Unique NamemRNA_H-paniculata_contig46708.11639.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46708.11639.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.880e-8
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 3 
Query:    3 MTLQFPGLRWDASLGCPDHPKNVMGISEVQRRGDRLIDKRDICRTCRMAGKGAGILASELLEVVDMSNDAG 215
            M  +FPGLRW ASL CP H +++       RRGD+L+     C  C     G G  A +LLE+VD+    G
Sbjct:  801 MCSEFPGLRWRASLKCPQHEQDMQISRTATRRGDKLLHGAT-CNLCDSETGGLGAAAIDLLEMVDIRRSRG 870
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BLAST of mRNA_H-paniculata_contig46708.11639.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.510e-8
Identity = 26/71 (36.62%), Postives = 40/71 (56.34%), Query Frame = 3 
Query:    3 MTLQFPGLRWDASLGCPDHPKNVMGISEVQRRGDRLIDKRDICRTCRMAGKGAGILASELLEVVDMSNDAG 215
            M + FPGLRW+ SL CP H   +   ++V   GD+ +++R  C  C    +G G  A +L+ +VD+  D G
Sbjct:  672 MLMDFPGLRWNGSLKCPQHGYEMPFATKVNCAGDKFLERR--CPRCSPQTRGLGAAAIDLIRMVDIRLDRG 740
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BLAST of mRNA_H-paniculata_contig46708.11639.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.310e-7
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 3 
Query:    3 MTLQFPGLRWDASLGCPDHPKNVMGISEVQRRGDRLIDKRDICRTCRMAGKGAGILASELLEVVDM 200
            M   FPGLRW ASL CP+H +++   +   R GD+L+ +   C  C     G G  A+ELL++VD+
Sbjct:  939 MCSAFPGLRWCASLKCPEHKQDMPISNTATRPGDKLLLEHG-CTLCSSETGGVGAAATELLQMVDV 1003
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46708.11639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FL89_ECTSI1.880e-840.85LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FZA1_ECTSI3.510e-836.62LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5JME6_9PHAE2.310e-740.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46708contigH-paniculata_contig46708:911..1329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size215
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46708.11639.1prot_H-paniculata_contig46708.11639.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46708 911..1327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930392.3761911-CDS-H-paniculata_contig46708:910..10391622930392.3761911-CDS-H-paniculata_contig46708:910..1039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46708 911..1039 -
1691481270.9538286-CDS-H-paniculata_contig46708:910..10391691481270.9538286-CDS-H-paniculata_contig46708:910..1039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46708 911..1039 -
1622930392.388683-CDS-H-paniculata_contig46708:1243..13271622930392.388683-CDS-H-paniculata_contig46708:1243..1327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46708 1244..1327 -
1691481270.9637408-CDS-H-paniculata_contig46708:1243..13271691481270.9637408-CDS-H-paniculata_contig46708:1243..1327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46708 1244..1327 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930392.3991194-UTR-H-paniculata_contig46708:1327..13291622930392.3991194-UTR-H-paniculata_contig46708:1327..1329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46708 1328..1329 -
1691481270.973363-UTR-H-paniculata_contig46708:1327..13291691481270.973363-UTR-H-paniculata_contig46708:1327..1329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46708 1328..1329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46708.11639.1

>prot_H-paniculata_contig46708.11639.1 ID=prot_H-paniculata_contig46708.11639.1|Name=mRNA_H-paniculata_contig46708.11639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MTLQFPGLRWDASLGCPDHPKNVMGISEVQRRGDRLIDKRDICRTCRMAG
KGAGILASELLEVVDMSNDAG
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mRNA from alignment at H-paniculata_contig46708:911..1329-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46708.11639.1 ID=mRNA_H-paniculata_contig46708.11639.1|Name=mRNA_H-paniculata_contig46708.11639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=419bp|location=Sequence derived from alignment at H-paniculata_contig46708:911..1329- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGACCCTGCAATTTCCAGGACTGCGCTGGGATGCGTCCTTGGGCTGC
CCAGATCACCCCAAAAACGTCATGGGCATCTCTGAGGTGCGGGTTATTCT
TTCAATGGGTCGACATGGTGTATTCTTTCCATGGATCGTCACTCTCGGTC
CCACAACAAGTAACGAGATGTTTTCGTGGTGTGCTTCCTTATTCACTACC
GGTAAACGGCGACCATGGGACTTTTCCCATGACTGCATTTTTTCCGTCTC
CGATGGTAATAGTAATTGTTGGTGCTCGCTTCACGCGCAGGTCCAGAGAA
GGGGTGATCGCTTGATAGACAAAAGAGACATCTGTAGAACTTGCCGCATG
GCGGGCAAGGGAGCTGGGATTCTTGCATCAGAGCTACTTGAGGTGGTCGA
CATGAGCAACGATGCAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig46708:911..1329-

>mRNA_H-paniculata_contig46708.11639.1 ID=mRNA_H-paniculata_contig46708.11639.1|Name=mRNA_H-paniculata_contig46708.11639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig46708:911..1329- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCTGCAATTTCCAGGACTGCGCTGGGATGCGTCCTTGGGCTGCCC
AGATCACCCCAAAAACGTCATGGGCATCTCTGAGATGACCCTGCAATTTC
CAGGACTGCGCTGGGATGCGTCCTTGGGCTGCCCAGATCACCCCAAAAAC
GTCATGGGCATCTCTGAGGTCCAGAGAAGGGGTGATCGCTTGATAGACAA
AAGAGACATCTGTAGAACTTGCCGCATGGCGGGCAAGGGAGCTGGGATTC
TTGCATCAGAGCTACTTGAGGTGGTCGACATGAGCAACGATGCAGGTGTC
CAGAGAAGGGGTGATCGCTTGATAGACAAAAGAGACATCTGTAGAACTTG
CCGCATGGCGGGCAAGGGAGCTGGGATTCTTGCATCAGAGCTACTTGAGG
TGGTCGACATGAGCAACGATGCAGGT
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