mRNA_H-paniculata_contig4667.11629.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4667.11629.1
Unique NamemRNA_H-paniculata_contig4667.11629.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: D8LMK2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK2_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 5.340e-112
Identity = 155/209 (74.16%), Postives = 180/209 (86.12%), Query Frame = 3 
Query:    3 WGNGCFWHVQHEMVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDDMTEKYGKEYNSLRRKYAEEGKLSETDCPGGFL 629
            WGNGCFWHVQ EM++AE+AILGR  D+LTSYAGY GAK N    KLCYHNMRG+ DYGKAGA EVVSV IP+SK+PEF++AYF+MFV+YDNGAGR+FMDRRD QDRGGEYRSLLGVPGGLSGP+ADPI++EAA   L LREG G DPDTLMRN VFVMDTA FPF+ GEIYHQF +DM+E YG++YN+LR++YAEEG + ET CP  F+
Sbjct:   87 WGNGCFWHVQREMIRAEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHNMRGIGDYGKAGAAEVVSVTIPSSKLPEFSKAYFDMFVKYDNGAGRIFMDRRDPQDRGGEYRSLLGVPGGLSGPMADPIKQEAAARGLALREGNGGDPDTLMRNTVFVMDTATFPFFKGEIYHQFHNDMSEDYGRKYNNLRKQYAEEGTMQETGCPEKFM 295
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BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: A0A6U3BKH7_9EUKA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3BKH7_9EUKA)

HSP 1 Score: 228 bits (582), Expect = 2.600e-67
Identity = 111/213 (52.11%), Postives = 147/213 (69.01%), Query Frame = 3 
Query:    6 GNGCFWHVQHEMVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKL----TLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDDM-TEKYGKEYNSLRRKYAEEGKLSETDCPGGFL 629
            G GCFWHVQHEMV+ E+ +L R   QLTS  GYAG K     GK+CYHNMR V+DYG+ G  EVV+V IP S + +F++ YF +FV+Y+   G   +DR D QD+G EYRS+LG+PGG+  P+   + E A K  L    +L EG G++PDTL++  V+VMD+ KFPF+P E+YHQF DD  +  YGK+YN+LR    +EG++SET CP G L
Sbjct:  100 GCGCFWHVQHEMVELEEKVLSRRGKQLTSLTGYAGGKKLGDGGKVCYHNMRQVADYGRLGHAEVVNVNIPRSNLKDFSKRYFELFVKYEL-PGVTIVDRADPQDKGPEYRSVLGIPGGVRSPMFAEV-EAACKEVLGSEWSLMEGHGNEPDTLLKRRVYVMDSNKFPFHPAEVYHQFHDDFQSPPYGKDYNNLRAVMKKEGRISETGCPEGML 310
[Close]
BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: A0A8J5XES5_DIALT (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XES5_DIALT)

HSP 1 Score: 223 bits (568), Expect = 1.090e-65
Identity = 105/207 (50.72%), Postives = 143/207 (69.08%), Query Frame = 3 
Query:    6 GNGCFWHVQHEMVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDDM-TEKYGKEYNSLRRKYAEEGKLSETDCPGG 623
            G GCFWHVQHE V+ E+++L R D +L+S  GYA       +GK+CYHN+RGV+DYGK G  E V+++IP S +P+FA+ YF++FV Y+   GR   +R D QDRG EYRS+LG+PGG+       I E A   K+ L EG G +PDTL++  V+VMD+ +FPF+P E YHQF +D  +  YG+ YN LR++ A+ GKL +T CPGG
Sbjct:   68 GCGCFWHVQHEFVQLERSLLKRADLELSSRCGYAAGSLLGENGKVCYHNLRGVADYGKLGHAEAVAMRIPPSALPDFAKLYFSLFVSYNLLPGREIFERADPQDRGPEYRSVLGLPGGVRSVYFAQI-ERANGNKMKLVEGKGDEPDTLLKRTVYVMDSDEFPFFPAEPYHQFHNDFQSPPYGRVYNDLRQQLADAGKLPDTGCPGG 273
[Close]
BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: A0A7S0AHU9_9STRA (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AHU9_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.160e-65
Identity = 102/205 (49.76%), Postives = 138/205 (67.32%), Query Frame = 3 
Query:    6 GNGCFWHVQHEMVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDDM-TEKYGKEYNSLRRKYAEEGKLSETDCP 617
            G GCFWH+QHE V+AE+ +LGRGD +LTS  GYAG K+   +G++CYHN + ++DYGK G GEVV +K+P S + +FA+ YF++F            +R D  DRGGEYRSL+G+PGG++ P    +   A    + L EG G+DPDTL R  V+V DTAKFPFY GE YHQF +D  +  YGK+YN L ++  E+G++  T CP
Sbjct:   58 GVGCFWHIQHEFVEAERKLLGRGDKELTSLTGYAGGKSTDKEGRVCYHNFQSIADYGKLGHGEVVGMKLPESSIGDFAKEYFDLFTPKG--------ERVDPMDRGGEYRSLIGLPGGVNHPRYAEVEAAATAKGMKLEEGKGNDPDTLGRKLVYVYDTAKFPFYQGEAYHQFHNDFQSPAYGKKYNDLAKEAVEDGRVKVTGCP 254
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BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: L1JFW7_GUITC (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JFW7_GUITC)

HSP 1 Score: 215 bits (548), Expect = 2.930e-62
Identity = 100/197 (50.76%), Postives = 133/197 (67.51%), Query Frame = 3 
Query:    6 GNGCFWHVQHEMVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDDMTEKYGKEYNSLRRKYAEEGK 596
            G GCFWHVQHE V AE+ ILGR + Q+TS  GYAG      DGK+CYHNM G SDYG  G  E V + +P SK  +FAQ Y N+F+   NG      +R D QDRGGEYRSL+G+PGG+ GP A+ ++  A+   LTL  G G++ DTL +  ++V D+ +FPF+P E+YHQF DDM +KY +EY+ L+R   ++G+
Sbjct:   83 GCGCFWHVQHEFVVAEEKILGRRNSQITSLTGYAGGTEVGRDGKVCYHNMFGDSDYGSLGHSEAVELSLPPSKFAQFAQVYMNLFI---NG------ERADPQDRGGEYRSLVGIPGGMDGPFAESLKAAASSRGLTLVAGKGNEGDTLGKKLIYVYDSVQFPFHPAEVYHQFHDDMVDKYSREYHDLKRIELQDGR 270
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BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: A0A7S2M6J5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M6J5_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.490e-61
Identity = 100/206 (48.54%), Postives = 134/206 (65.05%), Query Frame = 3 
Query:    3 WGNGCFWHVQHEMVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDD-MTEKYGKEYNSLRRKYAEEGKLSETDCP 617
            WG GC+WHVQHE + AE++ILGR D++LTS  GYAG     S+G++CYHN + ++DYGK G GEVV + IP SK+ +FA  YF +F   D G      +R D  D+GGEYRSLLG+PGG   P    +        +TL +G G+DPDTL +  V+V D+ KFPFY  E YHQ+ +D +T  YGKEYN+L     ++G++  T CP
Sbjct:   71 WGAGCYWHVQHEFILAERSILGRKDNELTSLTGYAGGFKTDSEGRVCYHNFQSIADYGKFGHGEVVGMTIPESKVEDFAVEYFKLFG--DKG------ERADPMDKGGEYRSLLGLPGGSKHPAFAQVEAAGKARGMTLVDGKGNDPDTLGKRLVYVYDSNKFPFYQAEFYHQYHNDFLTPAYGKEYNNLAEAALDDGRIKITGCP 268
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BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: A0A7S0Q9J3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0Q9J3_9CRYP)

HSP 1 Score: 209 bits (532), Expect = 6.670e-61
Identity = 101/204 (49.51%), Postives = 131/204 (64.22%), Query Frame = 3 
Query:    6 GNGCFWHVQHEMVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDDMTEKYGKEYNSLRRKYAEEGKLSETDCP 617
            G GCFWHVQH +  AE  ILGR   + T+ AGYAG+K    DGK+CYHN+ G SDYG+ G  E V ++IP+ K+ EFA+ +FN+ V   +G      +R D QDRG EYRS++G+PGG+S P     + EAA   +TL  G G DPDTL R  V+V D+  FP + GE++HQF DDM+E+YG  YN+LR      G L  T CP
Sbjct:   36 GAGCFWHVQHALALAEGKILGRSPQEYTAVAGYAGSKAVGRDGKVCYHNIAGDSDYGQLGYSEAVGLQIPSDKISEFAKPFFNLLV---DG------ERADPQDRGPEYRSIIGLPGGMSSPDFPAFQAEAAARGMTLARGAGGDPDTLGRRTVYVYDSDAFPLHQGEVFHQFHDDMSERYGAAYNALRGGAVRRGALVPTGCP 230
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BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: A0A7S1GME3_CYCTE (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GME3_CYCTE)

HSP 1 Score: 208 bits (530), Expect = 2.780e-60
Identity = 93/205 (45.37%), Postives = 138/205 (67.32%), Query Frame = 3 
Query:    6 GNGCFWHVQHEMVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDDMTEK-YGKEYNSLRRKYAEEGKLSETDCP 617
            G GCFWH+QHE ++AE++ILGR + +L++ AGYAG      +G++CYHN +G++DYG+ G GEVV +K+P +K+ +FA+ YF++F    NG      +R D  DRGGEYRSL+G+PGG++ PL   + +      + L  G G+DPDT+ +  V+V DT++FPFY  E+YHQF DD   + YG+ YN +     E+G++  T CP
Sbjct:   63 GVGCFWHIQHEFIEAERSILGRTNKELSALAGYAGGSKTGKEGRVCYHNFQGIADYGRLGHGEVVGMKLPEAKISDFAKVYFDLFR---NG------ERVDPMDRGGEYRSLIGLPGGMNHPLYPEVEKAGIAKGMKLVAGKGNDPDTIGKKLVYVYDTSEFPFYQAEVYHQFHDDFQSRPYGRSYNYIVNDLLEDGRIQGTGCP 258
[Close]
BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: A0A448YZ63_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZ63_9STRA)

HSP 1 Score: 209 bits (531), Expect = 4.100e-60
Identity = 101/206 (49.03%), Postives = 133/206 (64.56%), Query Frame = 3 
Query:    6 GNGCFWHVQHE-MVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDDM-TEKYGKEYNSLRRKYAEEGKLSETDCP 617
            G GCFWH+QHE +V+ EK ILGRG  Q TS AGYAG K+   +G++CYHN  GV+DYGK G GEVV + IP SK+ +F++ YF+++            DR D  DRG EYRSL+G+PGG+       +   A K    L EG G+DPDTL +  V+V D+ KFPFY GE+YHQ+ +D  +  YGKEYN+L     E+G++  T CP
Sbjct:   84 GVGCFWHIQHEFVVQGEKGILGRGPHQFTSAAGYAGGKSTDKEGRVCYHNFSGVADYGKLGHGEVVGMNIPQSKIGDFSELYFSLY-------NPKTKDRVDPMDRGAEYRSLIGLPGGMKHTSYPLVESAAEKAGFKLVEGKGNDPDTLGKQIVYVYDSTKFPFYQGEVYHQYHNDFQSPAYGKEYNNLVEVALEDGRIKGTGCP 282
[Close]
BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Match: A0A7S1YW62_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YW62_9STRA)

HSP 1 Score: 208 bits (529), Expect = 5.800e-60
Identity = 100/205 (48.78%), Postives = 129/205 (62.93%), Query Frame = 3 
Query:    6 GNGCFWHVQHEMVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGAGEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRSLLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAKFPFYPGEIYHQFRDDM-TEKYGKEYNSLRRKYAEEGKLSETDCP 617
            G GCFWH+QHE V+AE+ ILGR D Q+TS  GYAG      +G++CYHN +GV+DYGK G GEVV +KIP   + +FA+ YF+ F            +R D  DRGGEYR LLG+PGG   P+   + E A      L  G G++ DT+ R  V+V DTA FPFY  E+YHQF DD  +  YGK+YNSL +   ++G+L  T CP
Sbjct:   74 GVGCFWHIQHEFVQAERTILGRTDAQITSRTGYAGGTKADKEGRVCYHNFQGVADYGKLGHGEVVGMKIPTENIGDFAKEYFSYFSTKTG-------ERVDPMDRGGEYRYLLGLPGGTKHPMYAQVEEAATAKNFKLEVGKGNEGDTIGRRIVYVYDTATFPFYQAEVYHQFHDDFQSPAYGKKYNSLAQMAFDDGRLKITGCP 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4667.11629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMK2_ECTSI5.340e-11274.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U3BKH7_9EUKA2.600e-6752.11Peptide-methionine (S)-S-oxide reductase n=1 Tax=L... [more]
A0A8J5XES5_DIALT1.090e-6550.72Peptide-methionine (S)-S-oxide reductase n=1 Tax=D... [more]
A0A7S0AHU9_9STRA1.160e-6549.76Peptide-methionine (S)-S-oxide reductase n=2 Tax=M... [more]
L1JFW7_GUITC2.930e-6250.76Peptide-methionine (S)-S-oxide reductase n=1 Tax=G... [more]
A0A7S2M6J5_9STRA2.490e-6148.54Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S0Q9J3_9CRYP6.670e-6149.51Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S1GME3_CYCTE2.780e-6045.37Peptide-methionine (S)-S-oxide reductase n=1 Tax=C... [more]
A0A448YZ63_9STRA4.100e-6049.03Peptide-methionine (S)-S-oxide reductase n=1 Tax=P... [more]
A0A7S1YW62_9STRA5.800e-6048.78Peptide-methionine (S)-S-oxide reductase n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4667contigH-paniculata_contig4667:36..6305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.5
Seed ortholog evalue6.9e-83
Seed eggNOG ortholog2880.D8LMK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptide methionine sulfoxide reductase
EggNOG OGs2DF2K@1,2RZE5@2759
Ec32 ortholog descriptionPeptide methionine sulphoxide reductase MsrA
Ec32 orthologEc-05_003050.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1555
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4667.11629.1prot_H-paniculata_contig4667.11629.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4667 959..6267 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.9774392-UTR-H-paniculata_contig4667:35..9581622930390.9774392-UTR-H-paniculata_contig4667:35..958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4667 36..958 -
1691481270.245829-UTR-H-paniculata_contig4667:35..9581691481270.245829-UTR-H-paniculata_contig4667:35..958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4667 36..958 -
1622930391.0570323-UTR-H-paniculata_contig4667:6267..63051622930391.0570323-UTR-H-paniculata_contig4667:6267..6305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4667 6268..6305 -
1691481270.2920787-UTR-H-paniculata_contig4667:6267..63051691481270.2920787-UTR-H-paniculata_contig4667:6267..6305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4667 6268..6305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.9977787-CDS-H-paniculata_contig4667:958..11261622930390.9977787-CDS-H-paniculata_contig4667:958..1126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4667 959..1126 -
1691481270.2556362-CDS-H-paniculata_contig4667:958..11261691481270.2556362-CDS-H-paniculata_contig4667:958..1126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4667 959..1126 -
1622930391.0104392-CDS-H-paniculata_contig4667:1821..19711622930391.0104392-CDS-H-paniculata_contig4667:1821..1971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4667 1822..1971 -
1691481270.2689595-CDS-H-paniculata_contig4667:1821..19711691481270.2689595-CDS-H-paniculata_contig4667:1821..1971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4667 1822..1971 -
1622930391.026257-CDS-H-paniculata_contig4667:4461..45811622930391.026257-CDS-H-paniculata_contig4667:4461..4581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4667 4462..4581 -
1691481270.2766645-CDS-H-paniculata_contig4667:4461..45811691481270.2766645-CDS-H-paniculata_contig4667:4461..4581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4667 4462..4581 -
1622930391.0429313-CDS-H-paniculata_contig4667:6111..62671622930391.0429313-CDS-H-paniculata_contig4667:6111..6267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4667 6112..6267 -
1691481270.2844236-CDS-H-paniculata_contig4667:6111..62671691481270.2844236-CDS-H-paniculata_contig4667:6111..6267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4667 6112..6267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4667.11629.1

>prot_H-paniculata_contig4667.11629.1 ID=prot_H-paniculata_contig4667.11629.1|Name=mRNA_H-paniculata_contig4667.11629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
MVKAEKAILGRGDDQLTSYAGYAGAKTNPSDGKLCYHNMRGVSDYGKAGA
GEVVSVKIPASKMPEFAQAYFNMFVRYDNGAGRVFMDRRDTQDRGGEYRS
LLGVPGGLSGPLADPIREEAAKYKLTLREGLGSDPDTLMRNAVFVMDTAK
FPFYPGEIYHQFRDDMTEKYGKEYNSLRRKYAEEGKLSETDCPGGFL*
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mRNA from alignment at H-paniculata_contig4667:36..6305-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4667.11629.1 ID=mRNA_H-paniculata_contig4667.11629.1|Name=mRNA_H-paniculata_contig4667.11629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6270bp|location=Sequence derived from alignment at H-paniculata_contig4667:36..6305- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGGGCAACGGGTGTTTCTGGCACGTACAGCACGAGATGGTCAAGGCC
GAAAAGGCCATCTTGGGTAGGGGAGATGACCAACTGACCTCTTACGCTGG
CTACGCTGGCGCGAAGACGAACCCGTCGGATGGCAAGTTATGCTACCACA
ACATGCGAGGGGTTAGCGACTACGGAAAGGCAGGGGCCGGAGAGGTATGC
GACACCCACGAGACGTTTCTGAACATGTATCATTTGCTCCTTGACTGCTA
ATACTCAGTGAAACTTGTCAGATGTGAGCCTGCGTTAAGCACGCGTTACA
CCGAGTAGCAAACAGCTGTCCCTGTAAATGTTCCGCAAGATATCGTTTTT
GCAAGGTCATATTGCAGCTGTGGGTAGTAAGTACGATAAGTTCACTTGGT
TTGGTAGACGTTTACCGCCTACATTACACCGGAGAACCCGCCCTGCCCCT
AAATTTCCTTGGATTCTTTTTGCAAACTTCATTTTGTAAAAATATATATA
TTTTTTATCTGGCGACAATCCGAACGCTGGCGTGCCCAAGGTTCGAGAAA
CCCGCCGATGTCTTCTGTATTGTTCAGGGGTGTTATCCATATTGCATGGT
ACATTTTTCGGAACTTGTGAAATCGGGTAGGTAAGGAGTGCCATTGACCA
AAAATGGTTCTAAAAGTATCATGATGAAGATATCCTCTGTAAGAACGATA
TCTCCTCGTTACCTTTTGCGAAGTGCAAATGCCGATCATGTTATCCTCAA
AATGCCCGTGCACGGTACTTCACCGCGGTAAACGGATTTCTGAATACCAT
GAAAATTTACCGTGGCGATAGCAGGGTATTTATTCACTTGGACGTTGGAA
AAAAACTGCTGCCTAGATGTTCTTCCCACGGAGTGTCGCTTTATTGTGGT
GTTTCCAAAAACAAGTTTTTCTTGATCGTTCTCCTTTTGAGGGAGGTTTA
ATAAATTCCGAAAAAATCCCCCGCGATACCGAGAACACCCCTGGTATTTT
TACGGCAGTACCAATTATTCCTTGCATGATCCTTATGGGCGTTAAGAAAT
TTGACACTTACCGCAAGTGAAATCGAGTAGTCCCCTAAGGGTATATATAA
TACATATAAAGAAATCACAAGTGAAATTACGTGGTTGGACCGAAAATCTC
ACTTCTCGTTAGGTCCGCTTCATGATTGATACCGGATATTATTGAGACAT
TAAGGCCTAAATCTTTCAATTTTTTCAATGTCACGGTGATTTTTGGTTCA
AGGTTGTGGGTAAAAATTACTTGATTGACTCCGTGGCAATAATAAAAACT
TCCCATGCTCAGGAGCCGGCGAAATTGTTTAGTATCTGTGTCGGCTCCTG
TGTCACGAGTCACGAACGCGAAAGTCTTGAACGTTTACGAGCGGGACGGT
GATATTTGAACTGTAGCGAAGTATCCCAAATTCTACATACATACGCGCAT
TGATCTACGGCAATTGACGGAGGAATCCGTTCGAGTCTCCTTGATTAAGC
GGTGTCGTAGTTAGCACTGAGGTTGGCGGAAGGCAGCATGTACGGAGCTC
AAATGTTGAGCATTCGATCTACGATCCCATGATCTATATGCAATGTGATG
TGTTGTATCTCTTGCTTCTATGTCCACAAGGCAACTGTTAGGTTCGCGAT
ATTTTTACTCATGTTGGTTGTTTGTTTCCGTTATTCGGAACCTGACGGTA
TCTGACGGTATCTGACGACTGCAGGTTGTGAGCGTGAAAATACCTGCTTC
CAAGATGCCCGAGTTTGCTCAGGCCTATTTCAATATGTTCGTGCGGTACG
ACAATGGAGCAGGCCGCGTTTTCATGGACAGGCGGGACACACAGGTGAAT
AGGTTAGAAGTGAAAATCCACCGGCCTGCCAAACACGATTGAACTATCAT
TTTCCAGGAGTTGATCCTGTAGCGTAGGGATTTCGATGAACCCTCCCTAC
CAACATGCCAAACATGTTTTCTTTTCTTTTTAACTCCCGGAAGGCTAAGG
CAAAAACCTCTATCCGATGCTTCCATACCGAAGTAATGCCAAATATGTAT
CCTTTCTTGAACTGCCATTGTCCAGAATCTGTTATATTTACTGTAGCGTA
GACATTTTCGGGTCGAACCGCAAATCGGACTACGTCGCGACAAAATATTT
TCCCCGGAGTGAGAATTATCAGTCAATGGCAACCCTAAAGCCATTACTTG
TGCTTTTTTTGCCTGGACAGCACCCCCTATACATCTACCGACTCCGCCGT
TGTTTGTATAGCATACGGTGTGCGCCGACTGGAAAATCGTAAATGACACT
TTTGTTACTTGTCGAGGAAGATTCGTTTTCGAAAACCGAACCGGTTATAG
ACTGGTCATTATTTTGACCGAAAAAAACGGCGGTTTGAAACGCATAGTTT
TAGCAGGTTCACGCCAACGGAAAAACAAAACCAATGTAACGGAACCCTGG
AAAGACCAAGAGACTGGACCTATACTGGCTTCCCTGCGTCAGGAGTGTTT
TGAACCCACTTGGTGCAAACCTTTTTCAGAGTAAAGCAAGTACAGCGGTG
GCAACCGTTGTAGGCTGCTAGCTGCTGCAAGCAGGCGAGTATGGGCGCAC
CGATTGTTTTGGTGTTGGAGTGGGTATCGTGTGCGGTTGATGACTTCGGC
GCCCTTGGCACTCGAAAAAAGGGATCATTTTGACCGCGGAGAGGGAAGTA
GTTTGCTGTAGACCCCAGATGACTAATTAGATTCATTCAAGCCACCCACT
GATAGCATGGGTTGGATATCGTGCTGTTCTGGCGCCGCAGAAGTGTCGTG
TCTTCATAAAAATCTCGACGAGATTTATCAATAGGTGAGCTATCTCAACC
TCGCGGGATCTTTTTCTAGACAAACGATAGATCGTCTATCGGATGATGCG
ATATATATCAAGCGGCAATTAAGAGGATACGTTTGGTGTATGTTATAGTC
ATTATCAAGGGAACGTGCAATGTGCACATACTATGGATATCATCCAACAC
GTGGCAGACACAACACGCATGTTTTTTCTGCTTCCGGCGACGCCTTCAGC
GAGACTCCCTTACCAGCCGGCGGCGGCCGGCTCGCTCCCCTCGCTCTGAT
ATTTAAATATGGGCTTCACTACCCGATACCCAGCCGTACAAGTTTGAGGT
CGTCAAAACGTGTTACGCGCGGGGTATTGAACGCTGTAAGCTACTACGGT
ACCAAGAGAGGTTCGCCCTTCACTTGTTTTTAGCAACACACCCTTCGTTG
ATCCCTATTAATGACGCACCACACGGTCATGATCCATTTGCGGTCTTAAT
CTATCCATGGCTGAATGCTTGATATACTTGATTAACGTAGACGAGATTGG
TTGCGCAGTAAAGATCCATCGTTAATTAATAGTACGCTAGAAAAATTCCG
GGGTGTTCTCTGTGTTGCACTGTGTATTTTTCAGCACTCGTGAAGCCGGG
TACGAAAGGAGTACTACTACTGAGAAAAACACAGGGTATTGCGATAAAGA
TCCACTCTGTGGGAACGATATCTCGGCGTTAGTTTTTTTCGAACTTCAAG
TGTTGATCATGTTATCCTCAAAATGTGGTGCACGATACTTTATCGCGGTA
AAAACCGATTTCTGAATACCATGAAAGATTACCGTGGCGATAGCAAGGTG
TTCACTTGGACTTTGAAAAAACTAACGACTAGATGTTGTTCCCACGGATT
GTCACGTTGTTGTGGTGTTTCTCAAGCCATGTTTTTTTTAATAGTGCTCC
TTTCGAGGGCGGATTCCAAAACTCCCAAAAGCTATCGCGCAATACCGAGA
ACGCTCCTGATAAAACCCGAGCGAGGTCACCATGTGCTTAAATGTTGAGT
GCATTTCACAGGATCCCCCCCCCCCCCCCCCTGTGCACTGGGTATTATCG
CTTCCGCTTGCTATGAATAGGTGTGCATATTTGCCTCATTATCTGGTATA
ACCCCTTGGCAATGTGCTATCCTACAGTGTAAGCAATGGGGTAGTGTGTA
CAAAACCGTTAATGCCGCAGGTATCGCACCTGGGTGCGAAATGATGTAGA
ACGTGGCCAGTATCTCGAGAATGGAGACAGACCTTGCGCGTCCGGAAGAA
GACGTCGATCGACAGTTAGGTCTTGGTCAGATCTTTCCAACGGTACAGTA
TTTGTTGGCGATAGCTACAGTAATGTCGTGGTTGTCTGGGATAATCAATT
GCGTCTGAAATCGTTTGCACCCCGGTGCGATTCCTCCGGCTTGTACAGTA
ATGTTGTGAATGGGAAGAAAATGCACATCCCCCCTCTTTTGAGTCTAGCA
TCCCAAATCTAATTCTTCTTGCCCCGCGCCACAGGACCGAGGAGGAGAGT
ACCGTTCGCTCTTGGGTGTCCCGGGGGGACTCTCCGGTCCATTGGCTGAC
CCCATCAGGGAGGAAGCGGCAAAATACAAGTTAACGCTTCGGGAGGGGTT
GGGCAGCGACCCCGATACACTCATGAGGAACGCGGTGCGTGAGTTGGCCG
GCTCTTGCAAGAGTCCGACTAGGCGGTCTTTCCTTTTTTCAGCGTTTCTT
TTTTTGCATGCAGTAGACAACTGAAAAGCGTACTACATTGTTCTTTTTGT
TATGGCTTCGTTGACTAAATGTTGATAAAATTTCTCCCCCCCCCCCCAAT
TAAATTTGACTTTGAGGTTTCATTTATTTGTGTTTTTGAATACATTCTAA
AGTATTTTAGTAGGCAGGCAACGGCGACGCCTGTGGCGCGCTTAACTCAG
ACCCTCTCAAACTGTTCCGTGTCACGTGACACTTACCATCATCATCATCG
TCATCGTCATCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCCTCCTC
CTCCTCCTCGTCGTTGTCGTTGGTCCGTAACGATTTGATAGGAAGGGAAA
GGTTCACAACAATAGTGCAAAATGTTCCGGCAATGAAAAAGTTCGGGTTC
AATTGGTTCAAGACGGCAGCGGTTTGATTCGAAACTGTTCAGCGCAAGGT
TTATAGAATTGAAAATATTTGGGGTCGAAACATTTGGGTATGGCGGGGTT
CACTACGAAATAGTTCATCACCACCATGTTACCCCTCCTGTCCATTTCAA
TCGTTAACCCTATTGTACACTTCAAGCATTAGTCCTATTGTGCATATCGG
AATTCTGCGTTTTTATGGACTAATCGCAGGTGTTCGTCATGGACACGGCC
AAGTTTCCGTTTTACCCCGGCGAGATCTACCACCAATTCCGCGACGACAT
GACCGAGAAATATGGCAAGGAATACAATTCTCTCAGGCGCAAGTATGCCG
AGGAGGGGAAACTAAGTGAGACCGACTGCCCCGGAGGCTTCTTGTGATAT
TTTGCATTCACGCTCTCTTGATTCGCCCCGTTGCGGGTGCTTTCAGCAAT
ATCGCTTTTTGAGCACGGCTACATCATGACAACCGTTTGTGTTGTTCCCT
TCAGCGCGTTTAAAAACGTTGTCGAGGAACAAAGAAGGCCCATCACAACA
AATGTCGAGCGTTGCAGTCAGTCGCTGTGGGCAGAGCTATGCCTACCATC
TGTCAGGATTGTATGCACTGTCTTCAGTGGACTGTCTGTTTGAACAGCGG
GGGCTTCCTATCCCCGTAACTGTATCATAGAGATGTATGGTTTCCCCCTA
TATTTTGCCCGGGGATTAGACGGGGGTTATATAGAAAGAGACGCCCATGT
GGTCGAGTGATGGGACCCACTTTTGCAAGAAACACTCGCAGTTAGTCTAG
AATATGGCCAACTCGGGTCTCTTCATTGATCAAGCGGCAAAACTGGTCAA
CCGTGTCCAGGGAGCTTGCCGCTCGCCGAGGTTCAAGATATCGGTGTAGT
CTTTTCACATACTCTTTACTGTTACAGCAGAACTTAGATGAGTTCGGCTG
GTGGTGGCGCAGTACAATGGGGAATAGCGATCGACTAAACATGAAGATGT
TCAGGGCAATGTCTTTTTTTGCTGACTGTAACACTGATTTACATTCGATT
GCTTCAAACAGATATTTGACAAATGAGCGGCAATAAGGGTTGTACAGCAA
ACAGATTTTCTTCTTGTATACTGCGTCATGCAAGAGCGAAGGCAGATCAG
TTTGCATTGTGCAGCAGTATCTGGAGCTTTACCATTGAAGAAATGGCGAG
GTACGAACAGACGATCGGTTTAGTGCTGATTTAAACAGCATTCGAAAGGC
GGAAAATTCGATGCATGGACGAATAAATAGGATTGCAATGGATTGCGCAA
GACAACACCCCTGTCGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4667:36..6305-

>mRNA_H-paniculata_contig4667.11629.1 ID=mRNA_H-paniculata_contig4667.11629.1|Name=mRNA_H-paniculata_contig4667.11629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig4667:36..6305- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCAAGGCCGAAAAGGCCATCTTGGGTAGGGGAGATGACCAACTGAC
CTCTTACGCTGGCTACGCTGGCGCGAAGACGAACCCGTCGGATGGCAAGT
TATGCTACCACAACATGCGAGGGGTTAGCGACTACGGAAAGGCAGGGGCC
GGAGAGATGGTCAAGGCCGAAAAGGCCATCTTGGGTAGGGGAGATGACCA
ACTGACCTCTTACGCTGGCTACGCTGGCGCGAAGACGAACCCGTCGGATG
GCAAGTTATGCTACCACAACATGCGAGGGGTTAGCGACTACGGAAAGGCA
GGGGCCGGAGAGGTTGTGAGCGTGAAAATACCTGCTTCCAAGATGCCCGA
GTTTGCTCAGGCCTATTTCAATATGTTCGTGCGGTACGACAATGGAGCAG
GCCGCGTTTTCATGGACAGGCGGGACACACAGGTTGTGAGCGTGAAAATA
CCTGCTTCCAAGATGCCCGAGTTTGCTCAGGCCTATTTCAATATGTTCGT
GCGGTACGACAATGGAGCAGGCCGCGTTTTCATGGACAGGCGGGACACAC
AGGACCGAGGAGGAGAGTACCGTTCGCTCTTGGGTGTCCCGGGGGGACTC
TCCGGTCCATTGGCTGACCCCATCAGGGAGGAAGCGGCAAAATACAAGTT
AACGCTTCGGGAGGGGTTGGGCAGCGACCCCGATACACTCATGAGGAACG
CGGACCGAGGAGGAGAGTACCGTTCGCTCTTGGGTGTCCCGGGGGGACTC
TCCGGTCCATTGGCTGACCCCATCAGGGAGGAAGCGGCAAAATACAAGTT
AACGCTTCGGGAGGGGTTGGGCAGCGACCCCGATACACTCATGAGGAACG
CGGTGTTCGTCATGGACACGGCCAAGTTTCCGTTTTACCCCGGCGAGATC
TACCACCAATTCCGCGACGACATGACCGAGAAATATGGCAAGGAATACAA
TTCTCTCAGGCGCAAGTATGCCGAGGAGGGGAAACTAAGTGAGACCGACT
GCCCCGGAGGCTTCTTGTGAGTGTTCGTCATGGACACGGCCAAGTTTCCG
TTTTACCCCGGCGAGATCTACCACCAATTCCGCGACGACATGACCGAGAA
ATATGGCAAGGAATACAATTCTCTCAGGCGCAAGTATGCCGAGGAGGGGA
AACTAAGTGAGACCGACTGCCCCGGAGGCTTCTTGTGA
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