mRNA_H-paniculata_contig46652.11626.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46652.11626.1
Unique NamemRNA_H-paniculata_contig46652.11626.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46652.11626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46652contigH-paniculata_contig46652:1071..1502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size407
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46652.11626.1prot_H-paniculata_contig46652.11626.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46652 1172..1427 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.6949613-UTR-H-paniculata_contig46652:1070..11711622930390.6949613-UTR-H-paniculata_contig46652:1070..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46652 1071..1171 -
1691481270.1411684-UTR-H-paniculata_contig46652:1070..11711691481270.1411684-UTR-H-paniculata_contig46652:1070..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46652 1071..1171 -
1622930390.7560227-UTR-H-paniculata_contig46652:1427..15021622930390.7560227-UTR-H-paniculata_contig46652:1427..1502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46652 1428..1502 -
1691481270.1707041-UTR-H-paniculata_contig46652:1427..15021691481270.1707041-UTR-H-paniculata_contig46652:1427..1502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46652 1428..1502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.7229986-CDS-H-paniculata_contig46652:1171..12701622930390.7229986-CDS-H-paniculata_contig46652:1171..1270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46652 1172..1270 -
1691481270.150551-CDS-H-paniculata_contig46652:1171..12701691481270.150551-CDS-H-paniculata_contig46652:1171..1270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46652 1172..1270 -
1622930390.7349222-CDS-H-paniculata_contig46652:1295..14271622930390.7349222-CDS-H-paniculata_contig46652:1295..1427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46652 1296..1427 -
1691481270.1596527-CDS-H-paniculata_contig46652:1295..14271691481270.1596527-CDS-H-paniculata_contig46652:1295..1427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46652 1296..1427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46652.11626.1

>prot_H-paniculata_contig46652.11626.1 ID=prot_H-paniculata_contig46652.11626.1|Name=mRNA_H-paniculata_contig46652.11626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MWCETTSNMRHFQYRTRSSRKWAPHFTNILFIVGQRAGLVGEFSVFRALD
FVAINIAACWLGMCASRRVPALPPFP*
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mRNA from alignment at H-paniculata_contig46652:1071..1502-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46652.11626.1 ID=mRNA_H-paniculata_contig46652.11626.1|Name=mRNA_H-paniculata_contig46652.11626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig46652:1071..1502- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATCTCTGGGGGGGATCGATTTTGAAATAGTAGCCGTAGGAGTTTTTTG
ACCGGTCATATTTGGGCAGATTATTATGTGGTGTGAAACAACTTCCAATA
TGAGACATTTTCAATATAGGACCCGTTCATCAAGAAAATGGGCTCCTCAT
TTCACGAACATATTGTTCATTGTTGGTCAGCGTGCAGGCTTGGTCGGAGA
GTTCAGCGTCCATCACTCTCTCCAGGAAGAAGGTCTTCAGGGCCCTGGAC
TTTGTGGCGATCAACATCGCCGCTTGTTGGTTGGGTATGTGCGCCAGTAG
GCGCGTTCCTGCTCTGCCCCCTTTTCCTTGACTACTGTGACGGCGTGCTG
CTTAACGAATGCGCCCGTCCCAATCGGTGTACCCACCACCACAGTCAACC
CTCCCTCTGAAATAAATTGTTTTCATCGGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig46652:1071..1502-

>mRNA_H-paniculata_contig46652.11626.1 ID=mRNA_H-paniculata_contig46652.11626.1|Name=mRNA_H-paniculata_contig46652.11626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig46652:1071..1502- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTGTGAAACAACTTCCAATATGAGACATTTTCAATATAGGACCCG
TTCATCAAGAAAATGGGCTCCTCATTTCACGAACATATTGTTCATTGTTG
GTCAGCGTGCAGGCTTGGTCGGAGAGTTCAGCATGTGGTGTGAAACAACT
TCCAATATGAGACATTTTCAATATAGGACCCGTTCATCAAGAAAATGGGC
TCCTCATTTCACGAACATATTGTTCATTGTTGGTCAGCGTGCAGGCTTGG
TCGGAGAGTTCAGCGTCTTCAGGGCCCTGGACTTTGTGGCGATCAACATC
GCCGCTTGTTGGTTGGGTATGTGCGCCAGTAGGCGCGTTCCTGCTCTGCC
CCCTTTTCCTTGAGTCTTCAGGGCCCTGGACTTTGTGGCGATCAACATCG
CCGCTTGTTGGTTGGGTATGTGCGCCAGTAGGCGCGTTCCTGCTCTGCCC
CCTTTTCCTTGA
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