mRNA_H-paniculata_contig4663.11622.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4663.11622.1
Unique NamemRNA_H-paniculata_contig4663.11622.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: D7FQK3_ECTSI (Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.020e-25
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVNV 177
            ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVNV
Sbjct:  876 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVNV 924
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BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: A0A2S1PRW8_FUCSE (Putative argonaute n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRW8_FUCSE)

HSP 1 Score: 103 bits (258), Expect = 1.910e-24
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVNV 177
            EN FDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVNV
Sbjct:  885 ENKFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVNV 933
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BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: A0A022R9S0_ERYGU (Piwi domain-containing protein (Fragment) n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R9S0_ERYGU)

HSP 1 Score: 66.2 bits (160), Expect = 1.180e-12
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVNVSIFS 189
            EN F +D+LQ+L   LC+ Y RCTRSVSI P  YYAHL AFRA++++    FS
Sbjct:   14 ENRFSADALQILTNSLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEAGEFS 66
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BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: A0A022RBB8_ERYGU (Piwi domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RBB8_ERYGU)

HSP 1 Score: 67.0 bits (162), Expect = 1.590e-12
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVNVSIFS 189
            EN F +D+LQ+L  +LC+ Y RCTRSVSI P  YYAHL AFRA++++    FS
Sbjct:   57 ENRFSADALQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEAGEFS 109
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BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: A0A4D8ZUI5_SALSN (Eukaryotic translation initiation factor 2C n=10 Tax=Salvia TaxID=21880 RepID=A0A4D8ZUI5_SALSN)

HSP 1 Score: 69.3 bits (168), Expect = 2.900e-12
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVNVSIFS 189
            ENAF +D LQ+L Y LC+ Y RCTRSVS+ P  YYAHL AFRA++++  + FS
Sbjct:  845 ENAFTADGLQMLTYSLCYTYARCTRSVSLVPPAYYAHLAAFRARYYIEGTDFS 897
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BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: A0A835Z8Z7_9STRA (Argonaute 1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.960e-12
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVN 174
            E  F +D +Q L Y LC++  RCTRSVSIPPAVYYAHL AFRAQ FV 
Sbjct:  796 EMNFSADQIQKLIYELCYLQARCTRSVSIPPAVYYAHLAAFRAQHFVQ 843
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BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: A0A1Y3N5Y0_PIRSE (Piwi domain-containing protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N5Y0_PIRSE)

HSP 1 Score: 66.2 bits (160), Expect = 5.410e-12
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVN 174
            EN F+S+ LQ L Y+LC++YCR T SVSIPP VYYAHL A RA+ ++N
Sbjct:  126 ENNFNSEGLQSLTYNLCYLYCRATCSVSIPPPVYYAHLAASRARCYLN 173
[Close]
BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: A0A022RJQ7_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RJQ7_ERYGU)

HSP 1 Score: 68.6 bits (166), Expect = 5.430e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVN 174
            EN F +DS+Q+L Y LC+ Y RCTRSVSI P  YYAHL AFRA++++ 
Sbjct:  918 ENKFSADSMQMLTYSLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIE 965
[Close]
BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: A0A1D2ADF1_AUXPR (Piwi domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2ADF1_AUXPR)

HSP 1 Score: 65.5 bits (158), Expect = 5.450e-12
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQ 162
            EN F +D +QLL YHLC+++CRCTRS+S+ P   YAHL AFR +
Sbjct:   57 ENKFGADGMQLLTYHLCYLFCRCTRSISVCPPAQYAHLAAFRGR 100
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BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Match: D7TIX6_VITVI (Uncharacterized protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=D7TIX6_VITVI)

HSP 1 Score: 68.2 bits (165), Expect = 7.400e-12
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   31 ENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVAFRAQFFVN 174
            EN F +D+LQ+L   LC+ Y RCTRSVSI P VYYAHL AFRA+F+V 
Sbjct:  770 ENKFSADALQMLANDLCYTYARCTRSVSIVPPVYYAHLAAFRAKFYVE 817
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4663.11622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQK3_ECTSI4.020e-25100.00Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A2S1PRW8_FUCSE1.910e-2497.96Putative argonaute n=1 Tax=Fucus serratus TaxID=87... [more]
A0A022R9S0_ERYGU1.180e-1256.60Piwi domain-containing protein (Fragment) n=1 Tax=... [more]
A0A022RBB8_ERYGU1.590e-1256.60Piwi domain-containing protein n=1 Tax=Erythranthe... [more]
A0A4D8ZUI5_SALSN2.900e-1258.49Eukaryotic translation initiation factor 2C n=10 T... [more]
A0A835Z8Z7_9STRA3.960e-1266.67Argonaute 1 n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A1Y3N5Y0_PIRSE5.410e-1262.50Piwi domain-containing protein (Fragment) n=1 Tax=... [more]
A0A022RJQ7_ERYGU5.430e-1260.42Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A1D2ADF1_AUXPR5.450e-1259.09Piwi domain-containing protein n=1 Tax=Auxenochlor... [more]
D7TIX6_VITVI7.400e-1264.58Uncharacterized protein n=2 Tax=Vitis vinifera Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4663contigH-paniculata_contig4663:10798..11633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue6.9e-21
Seed eggNOG ortholog2880.D7FQK3
KEGG koko:K11593
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gene silencing by RNA
EggNOG OGsKOG1041@1,KOG1041@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Exons2
Model size189
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.3038437-CDS-H-paniculata_contig4663:10797..109121622930390.3038437-CDS-H-paniculata_contig4663:10797..10912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 10798..10912 -
1691481270.008638-CDS-H-paniculata_contig4663:10797..109121691481270.008638-CDS-H-paniculata_contig4663:10797..10912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 10798..10912 -
1622930390.3180122-CDS-H-paniculata_contig4663:11559..116331622930390.3180122-CDS-H-paniculata_contig4663:11559..11633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 11560..11633 -
1691481270.0195806-CDS-H-paniculata_contig4663:11559..116331691481270.0195806-CDS-H-paniculata_contig4663:11559..11633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4663 11560..11633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4663.11622.1prot_H-paniculata_contig4663.11622.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4663 10798..11633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4663.11622.1

>prot_H-paniculata_contig4663.11622.1 ID=prot_H-paniculata_contig4663.11622.1|Name=mRNA_H-paniculata_contig4663.11622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MFCFVLFCSSENAFDSDSLQLLCYHLCFMYCRCTRSVSIPPAVYYAHLVA
FRAQFFVNVSIFS
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mRNA from alignment at H-paniculata_contig4663:10798..11633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4663.11622.1 ID=mRNA_H-paniculata_contig4663.11622.1|Name=mRNA_H-paniculata_contig4663.11622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=836bp|location=Sequence derived from alignment at H-paniculata_contig4663:10798..11633- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTGTTTTGTTCTGTTTTGTTCTTCAGAGAACGCGTTCGACTCGGA
CTCCCTCCAGCTGCTTTGCTACCAGTGAGTTTTCGATTCTCTCGCGTTAG
TTGCGATATTAGAATGGCTTGCTTGAGCCTAGAGGCATGATTGGCTGTTG
CTCGCGTTTTTGTCAGGAAATGTCAACACAGTTACGACGGAACAACTAGT
GGTTTTGGTGTCGTCGCTGAAGAGCATTTTTTACACACAGTGAGGACGAA
ATAGATAGTGTTGATAGTGTAAGCGTTGTGTGGACTTTTGACTTGTTCTT
ATCTTTGCGTCGGTGAGAAGCCACTTGTTTTCCTGACTTGTGATTCCATG
GCATGGCGTAGCTCCGATGCGGCTTCGTGCAATCTCAACCCTGGTGTTGA
TACCTAGCGGCGGTGGTGGAGAGGTTTGTTTCAAATGATCATATCTGTTC
ATTAAATAACGAAAAAAGGCTGCAAAAGTTTGCATCTGGCTCGTGCTGCG
TATGTAGTAAGTCACTTTCGCCGTGATATGTTTTGTTGGTGATTCGAATC
TGTCCATACCAGTTATAGGGATGATCTTTGAGACTTGCTTTTTTTTTTTT
TTTGAGTCATGAGAAATTAGTTGCCTCACACCCTTGTGTGATCGGCGGGT
CTCTCTCTCTCTCTGTCTCTTATGTTTGTGCGTTCGTTCTCGTTTTTTTG
TTTTTTTTCTTGTCTGGGCAGTTTGTGCTTCATGTACTGTCGGTGCACCC
GCAGCGTCTCCATCCCGCCTGCGGTATACTACGCCCATCTTGTTGCTTTC
CGAGCACAGTTCTTCGTCAACGTGAGTATTTTTTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig4663:10798..11633-

>mRNA_H-paniculata_contig4663.11622.1 ID=mRNA_H-paniculata_contig4663.11622.1|Name=mRNA_H-paniculata_contig4663.11622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig4663:10798..11633- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTGTTTTGTTCTGTTTTGTTCTTCAGAGAACGCGTTCGACTCGGA
CTCCCTCCAGCTGCTTTGCTACCAATGTTCTGTTTTGTTCTGTTTTGTTC
TTCAGAGAACGCGTTCGACTCGGACTCCCTCCAGCTGCTTTGCTACCATT
TGTGCTTCATGTACTGTCGGTGCACCCGCAGCGTCTCCATCCCGCCTGCG
GTATACTACGCCCATCTTGTTGCTTTCCGAGCACAGTTCTTCGTCAACGT
GAGTATTTTTTCATTTGTGCTTCATGTACTGTCGGTGCACCCGCAGCGTC
TCCATCCCGCCTGCGGTATACTACGCCCATCTTGTTGCTTTCCGAGCACA
GTTCTTCGTCAACGTGAGTATTTTTTCA
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