mRNA_H-paniculata_contig4662.11620.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4662.11620.1
Unique NamemRNA_H-paniculata_contig4662.11620.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4662.11620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4662contigH-paniculata_contig4662:10436..14520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1988
Cds size1986
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.1385603-CDS-H-paniculata_contig4662:10437..105921622930390.1385603-CDS-H-paniculata_contig4662:10437..10592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4662 10438..10592 -
1691481269.9196334-CDS-H-paniculata_contig4662:10437..105921691481269.9196334-CDS-H-paniculata_contig4662:10437..10592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4662 10438..10592 -
1622930390.151936-CDS-H-paniculata_contig4662:12689..145201622930390.151936-CDS-H-paniculata_contig4662:12689..14520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4662 12690..14520 -
1691481269.9315844-CDS-H-paniculata_contig4662:12689..145201691481269.9315844-CDS-H-paniculata_contig4662:12689..14520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4662 12690..14520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4662.11620.1prot_H-paniculata_contig4662.11620.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4662 10438..14520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4662.11620.1

>prot_H-paniculata_contig4662.11620.1 ID=prot_H-paniculata_contig4662.11620.1|Name=mRNA_H-paniculata_contig4662.11620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=662bp
FHNEDTGETTWDPPPTKTGSHNARGSSNVRVNSQMRPQQQQQQQHPHPGY
ESAESNRNSRAAAAARGKLMSAEERFSDRSPASAPGGNNKKRTWFGLRRN
KTAAGQSQLQVSQQQKGITPQERWEDRWQEIGPGRRDGGGGDGGDERRLD
RAGQVVREYNHLPAATPSAAGRTADFQSTEGFRGEYQPRQPPPPPQQQQQ
QQQQRGGVRQDEQDGAFYRYDRMRRPATEGNGGGRGRESVSGAARPWDPY
AGMMAYATPPSADYLESSEANADAMAIDTAEEEKGKVRTPEGGGRWWVAA
GDASTPGMTGTTAALMAPTAVVDGSAPPIDGDGDCDSRQDGHADGRTSPR
QELQGQSAGGEEGTVGNETSAGETEVDLEASGGMSGGEVPPPASGAASTE
QHGQPNLMTNKGWFSPPAPPAAAATGVLKEKEENTTPTSATATTMLNSPI
TAAAAAAPAADSVTAGTGGRGGQAAVAAADANKDDAAPMFNGSVGGEAGG
SGGGGDSFAASGATAAGVGDGVDPTMMMADVFYGVPQDQQLGEKGVELPP
GWRQQGSGGGLGLGYSEGQLQQQQHQGQGGQQPAQQEQAPQAFEWDWEES
WGQAAPWSGTGWTAPPSPGGSLEFPARDGCGSSAVAPPPLQQHGEAPANM
WGFQSASEGVGG
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mRNA from alignment at H-paniculata_contig4662:10436..14520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4662.11620.1 ID=mRNA_H-paniculata_contig4662.11620.1|Name=mRNA_H-paniculata_contig4662.11620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4085bp|location=Sequence derived from alignment at H-paniculata_contig4662:10436..14520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCACAATGAAGACACGGGAGAGACAACCTGGGACCCACCGCCTACAAA
AACTGGCAGTCACAACGCTCGTGGTAGCAGCAACGTCCGTGTAAACTCTC
AGATGAGGCCACAACAGCAGCAGCAACAACAACACCCCCATCCAGGGTAT
GAGTCGGCGGAAAGCAACCGTAATTCACGAGCAGCGGCGGCGGCGCGCGG
GAAACTGATGTCTGCAGAAGAACGTTTCTCGGATCGTTCCCCAGCTTCGG
CGCCAGGTGGCAACAACAAGAAGCGGACCTGGTTCGGGCTCCGGCGCAAT
AAAACGGCGGCAGGACAATCGCAGCTGCAAGTATCGCAGCAACAGAAAGG
CATAACGCCTCAGGAGCGATGGGAAGACCGGTGGCAGGAAATTGGACCAG
GAAGACGCGATGGCGGCGGCGGTGATGGCGGGGACGAGCGACGGTTAGAT
AGAGCAGGACAAGTAGTAAGAGAGTACAACCATCTCCCCGCTGCCACCCC
ATCCGCAGCCGGGAGAACAGCCGATTTTCAAAGTACGGAAGGTTTTCGTG
GTGAGTATCAACCTCGACAGCCACCGCCGCCGCCGCAGCAGCAGCAGCAG
CAGCAGCAGCAACGAGGAGGAGTAAGGCAGGACGAGCAAGACGGAGCGTT
TTATCGATACGATAGAATGCGCCGGCCGGCGACGGAAGGCAACGGCGGCG
GTAGAGGCAGGGAGAGCGTCAGCGGAGCAGCGCGACCGTGGGACCCTTAT
GCTGGGATGATGGCGTACGCTACGCCTCCTTCCGCCGATTATCTTGAGTC
TTCAGAGGCGAACGCGGATGCGATGGCGATAGACACCGCAGAAGAGGAGA
AAGGAAAAGTCAGGACTCCAGAGGGAGGGGGGAGGTGGTGGGTTGCTGCC
GGCGACGCCTCCACCCCTGGGATGACAGGGACGACGGCGGCGCTGATGGC
GCCGACGGCCGTTGTCGATGGGAGTGCCCCGCCAATAGATGGGGACGGAG
ATTGCGATTCTCGACAGGACGGTCATGCCGACGGGCGCACATCACCGCGG
CAAGAACTCCAAGGACAGTCAGCCGGGGGTGAAGAGGGTACTGTTGGCAA
CGAGACAAGTGCCGGCGAGACGGAGGTTGACCTGGAAGCGTCGGGAGGCA
TGTCGGGTGGAGAGGTACCGCCGCCGGCCTCAGGCGCCGCCTCAACGGAG
CAACACGGACAGCCTAATTTGATGACGAACAAGGGATGGTTTTCGCCTCC
TGCTCCTCCTGCAGCTGCTGCTACTGGGGTTCTGAAGGAGAAAGAAGAGA
ACACCACTCCGACATCGGCGACAGCGACAACAATGCTCAACAGCCCCATC
ACCGCCGCCGCCGCTGCTGCTCCTGCTGCTGATTCGGTGACGGCGGGAAC
TGGCGGGCGAGGTGGCCAGGCGGCAGTGGCGGCGGCAGATGCCAATAAGG
ACGATGCAGCGCCAATGTTCAATGGGTCAGTAGGAGGAGAAGCAGGAGGC
AGCGGAGGGGGCGGAGACTCATTTGCCGCGAGCGGCGCAACAGCGGCCGG
TGTCGGGGATGGTGTGGACCCTACGATGATGATGGCGGATGTATTTTACG
GTGTCCCCCAAGACCAGCAACTGGGGGAGAAAGGAGTGGAACTACCTCCG
GGGTGGCGACAGCAGGGATCGGGAGGAGGGTTAGGGCTAGGGTATTCTGA
GGGCCAGTTACAGCAGCAGCAGCACCAAGGGCAGGGAGGTCAGCAGCCTG
CCCAGCAGGAGCAGGCGCCGCAAGCGTTCGAATGGGATTGGGAAGAATCG
TGGGGCCAAGCGGCTCCTTGGAGTGGGACGGGTAAGAGGATGGGTGGTGC
GCACAATCGGGTAATTGCGATTTTTTTCTACAGGATAAGACAAGGGCTGT
ACAAAGTGTGTGTGGTTCTGTCAGTTGGCAAAAGTAATTCACTCGGACAC
ATGGGCGCCTCTGTTGCAACCCATATGAACTGAAAAAATACTACAACCGC
AAAATGCGGCCTCGTATATTGAAACAGGGGTAGGGGGTGTAACTTTTGTC
ATCATCCAGAGGGTAGCCCTTCAAAATGAACCCGCACATATAGGATCATG
TTATCGCGTCGCCAGATGCCTCCACAACTCCTGAAGGCAGGAAAGCAGAT
GAGCGTCAAGAAATCAGGCATCCTATAGGCGAGACTCGAATTCCAACGAT
GCATCAACGCCTGGATGGTGCTGAGCGCCACCCATTACTTACACCCGGGT
CGAAAGCTGATAATGAGATGATTTTGCACAACAATTGCACCGCACGATAG
CCCACGTCATATCGAAGGTCATGTGATCACTGCGATTTTTTTAATCAAAT
AGAATGGGGTGGACATCCACGTGGATATGAACATCTCCCCATGGAGATTT
TGGCTGTGTAGATTGTCTGAATCATGGGAGATGTATAGAAACGATGTATG
AACTCACAAACTGTCTGTACAGCTCTGACTGTAAATTATTGTTTGTACTG
ACGCGCAGTTCTGACCGAACACAGGTGGTCTCGAAAGATGGCTCTTTTTT
ACCTGTACATCAGCACCATTGTTAATGCTCTACAAACTTTGAGCCCGAGG
CAAACGCCGAAATTTTATCCAATGCAGACGGTCCATGGTCAGATGGGTCG
CTGTCGGTGTATCATACGGTTACACAATTTTGAATTAGGTACTTTCGAGT
GTGCAGCCAAGATATTAGGGATTTTTCCATGCGAAAAATGAGTGGGAAAT
GTCGTTTTCTTGGGGGAATCTCGTTATGTCTTTCTGTATGTATCGACGTC
ATCCTGCGGTTTTGCTGCACAGGTGTTGAGGAGAAGGCGGAGGGAGAATT
CAGGGTTGATTTTAGTTTTGGCTTTCTACATTTCATACGCGTGACGATGA
TGCCCAGGCCCGTTGTGTACAAAAGGCGGTGCCAGGGTATACATGTATGT
ACATGCGCCCACACTGTGGTAGTGCCCCTCTGAATGGTTGCATTTTTTGG
GAAGATTATTGTTCCTTGCATTGACAATAGGCAGCTTCAAGCCTTACGGA
CCAGGTTGCCTGCATTGCGACAAATTTCGACGCGCGATTTTTGACAGTCC
CGCGTCGAAAAAAGAGGGGGAGGGTGCTTTTTGGTGGAGGGGGGGGTACC
GAATATCGACGGACATAATTATTGCTTTGGCCAGGTTGAGATCCGATCCG
TATGTCGACAAGCATATGATGAAACAATAAGTTGGATATCTAGTGAAATT
TAGAATATCAGGTAGTCGATGCTAGGTGTAAAAGGGTATCGGCTCTTTTT
GGCAATATTCACGTACGTCAAGGGCTGGCACAGCAGCCGGAGTGCCGTGC
GCCTAATGTGTAGCGATGGTACAGCTAACAGACTGCAGTATACACATTGG
TTTCATCGAGCGGTGGCAGTCAGCTGGACAGCGCAAACAACATGACGCCG
TAGAGTTGCGCACGGCGACAAAAAAACAGATGTGATGCTGCGTATGTGGC
ATCACGTCTGGGGCACAGTGGAAATGTAGGGAAACAGCTGGCATGCACCA
GCATATACCGAGAATTTCTTAGCGAGCGCTAGCCGTTGTGTGTGTGGCGT
CCTGTTATAAGTGGCGGCACCCGCAGGCACAGCAATAGGCGGTCTGCCAC
AGTCGTGGCAATCGGGAGTTGGGGTTCCTGGAATAAAGTTGTTTCTTCCT
GTTAGGGTTTTTGTCCAGGTGTAGGAGGATTAAGAGATAGTTGAGAATTA
TGTTTTCATGTACCAACCCCCCGTACCTGTGTATGTGTGTGTGTGTGTGT
GTGTGTGTGTATCGTGTGCGCGTCTTGTCATGCAACGCGCAATGCAGCAG
ATTTTCACAGGTAATCTAGGCCGTAGGCTATAGGGCAAATGCTGACAATC
CCCCCCCGTCCTCCGCCGTTTGAACCAGGCTGGACTGCACCCCCATCGCC
TGGAGGGTCGCTGGAATTCCCTGCTCGCGACGGTTGTGGAAGCAGTGCCG
TAGCCCCTCCCCCATTACAGCAACATGGTGAAGCACCAGCAAATATGTGG
GGTTTCCAGAGTGCTTCGGAGGGGGTGGGGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4662:10436..14520-

>mRNA_H-paniculata_contig4662.11620.1 ID=mRNA_H-paniculata_contig4662.11620.1|Name=mRNA_H-paniculata_contig4662.11620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3972bp|location=Sequence derived from alignment at H-paniculata_contig4662:10436..14520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCACAATGAAGACACGGGAGAGACAACCTGGGACCCACCGCCTACAAA
AACTGGCAGTCACAACGCTCGTGGTAGCAGCAACGTCCGTGTAAACTCTC
AGATGAGGCCACAACAGCAGCAGCAACAACAACACCCCCATCCAGGGTAT
GAGTCGGCGGAAAGCAACCGTAATTCACGAGCAGCGGCGGCGGCGCGCGG
GAAACTGATGTCTGCAGAAGAACGTTTCTCGGATCGTTCCCCAGCTTCGG
CGCCAGGTGGCAACAACAAGAAGCGGACCTGGTTCGGGCTCCGGCGCAAT
AAAACGGCGGCAGGACAATCGCAGCTGCAAGTATCGCAGCAACAGAAAGG
CATAACGCCTCAGGAGCGATGGGAAGACCGGTGGCAGGAAATTGGACCAG
GAAGACGCGATGGCGGCGGCGGTGATGGCGGGGACGAGCGACGGTTAGAT
AGAGCAGGACAAGTAGTAAGAGAGTACAACCATCTCCCCGCTGCCACCCC
ATCCGCAGCCGGGAGAACAGCCGATTTTCAAAGTACGGAAGGTTTTCGTG
GTGAGTATCAACCTCGACAGCCACCGCCGCCGCCGCAGCAGCAGCAGCAG
CAGCAGCAGCAACGAGGAGGAGTAAGGCAGGACGAGCAAGACGGAGCGTT
TTATCGATACGATAGAATGCGCCGGCCGGCGACGGAAGGCAACGGCGGCG
GTAGAGGCAGGGAGAGCGTCAGCGGAGCAGCGCGACCGTGGGACCCTTAT
GCTGGGATGATGGCGTACGCTACGCCTCCTTCCGCCGATTATCTTGAGTC
TTCAGAGGCGAACGCGGATGCGATGGCGATAGACACCGCAGAAGAGGAGA
AAGGAAAAGTCAGGACTCCAGAGGGAGGGGGGAGGTGGTGGGTTGCTGCC
GGCGACGCCTCCACCCCTGGGATGACAGGGACGACGGCGGCGCTGATGGC
GCCGACGGCCGTTGTCGATGGGAGTGCCCCGCCAATAGATGGGGACGGAG
ATTGCGATTCTCGACAGGACGGTCATGCCGACGGGCGCACATCACCGCGG
CAAGAACTCCAAGGACAGTCAGCCGGGGGTGAAGAGGGTACTGTTGGCAA
CGAGACAAGTGCCGGCGAGACGGAGGTTGACCTGGAAGCGTCGGGAGGCA
TGTCGGGTGGAGAGGTACCGCCGCCGGCCTCAGGCGCCGCCTCAACGGAG
CAACACGGACAGCCTAATTTGATGACGAACAAGGGATGGTTTTCGCCTCC
TGCTCCTCCTGCAGCTGCTGCTACTGGGGTTCTGAAGGAGAAAGAAGAGA
ACACCACTCCGACATCGGCGACAGCGACAACAATGCTCAACAGCCCCATC
ACCGCCGCCGCCGCTGCTGCTCCTGCTGCTGATTCGGTGACGGCGGGAAC
TGGCGGGCGAGGTGGCCAGGCGGCAGTGGCGGCGGCAGATGCCAATAAGG
ACGATGCAGCGCCAATGTTCAATGGGTCAGTAGGAGGAGAAGCAGGAGGC
AGCGGAGGGGGCGGAGACTCATTTGCCGCGAGCGGCGCAACAGCGGCCGG
TGTCGGGGATGGTGTGGACCCTACGATGATGATGGCGGATGTATTTTACG
GTGTCCCCCAAGACCAGCAACTGGGGGAGAAAGGAGTGGAACTACCTCCG
GGGTGGCGACAGCAGGGATCGGGAGGAGGGTTAGGGCTAGGGTATTCTGA
GGGCCAGTTACAGCAGCAGCAGCACCAAGGGCAGGGAGGTCAGCAGCCTG
CCCAGCAGGAGCAGGCGCCGCAAGCGTTCGAATGGGATTGGGAAGAATCG
TGGGGCCAAGCGGCTCCTTGGAGTGGGACGGTTCCACAATGAAGACACGG
GAGAGACAACCTGGGACCCACCGCCTACAAAAACTGGCAGTCACAACGCT
CGTGGTAGCAGCAACGTCCGTGTAAACTCTCAGATGAGGCCACAACAGCA
GCAGCAACAACAACACCCCCATCCAGGGTATGAGTCGGCGGAAAGCAACC
GTAATTCACGAGCAGCGGCGGCGGCGCGCGGGAAACTGATGTCTGCAGAA
GAACGTTTCTCGGATCGTTCCCCAGCTTCGGCGCCAGGTGGCAACAACAA
GAAGCGGACCTGGTTCGGGCTCCGGCGCAATAAAACGGCGGCAGGACAAT
CGCAGCTGCAAGTATCGCAGCAACAGAAAGGCATAACGCCTCAGGAGCGA
TGGGAAGACCGGTGGCAGGAAATTGGACCAGGAAGACGCGATGGCGGCGG
CGGTGATGGCGGGGACGAGCGACGGTTAGATAGAGCAGGACAAGTAGTAA
GAGAGTACAACCATCTCCCCGCTGCCACCCCATCCGCAGCCGGGAGAACA
GCCGATTTTCAAAGTACGGAAGGTTTTCGTGGTGAGTATCAACCTCGACA
GCCACCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAACGAGGAG
GAGTAAGGCAGGACGAGCAAGACGGAGCGTTTTATCGATACGATAGAATG
CGCCGGCCGGCGACGGAAGGCAACGGCGGCGGTAGAGGCAGGGAGAGCGT
CAGCGGAGCAGCGCGACCGTGGGACCCTTATGCTGGGATGATGGCGTACG
CTACGCCTCCTTCCGCCGATTATCTTGAGTCTTCAGAGGCGAACGCGGAT
GCGATGGCGATAGACACCGCAGAAGAGGAGAAAGGAAAAGTCAGGACTCC
AGAGGGAGGGGGGAGGTGGTGGGTTGCTGCCGGCGACGCCTCCACCCCTG
GGATGACAGGGACGACGGCGGCGCTGATGGCGCCGACGGCCGTTGTCGAT
GGGAGTGCCCCGCCAATAGATGGGGACGGAGATTGCGATTCTCGACAGGA
CGGTCATGCCGACGGGCGCACATCACCGCGGCAAGAACTCCAAGGACAGT
CAGCCGGGGGTGAAGAGGGTACTGTTGGCAACGAGACAAGTGCCGGCGAG
ACGGAGGTTGACCTGGAAGCGTCGGGAGGCATGTCGGGTGGAGAGGTACC
GCCGCCGGCCTCAGGCGCCGCCTCAACGGAGCAACACGGACAGCCTAATT
TGATGACGAACAAGGGATGGTTTTCGCCTCCTGCTCCTCCTGCAGCTGCT
GCTACTGGGGTTCTGAAGGAGAAAGAAGAGAACACCACTCCGACATCGGC
GACAGCGACAACAATGCTCAACAGCCCCATCACCGCCGCCGCCGCTGCTG
CTCCTGCTGCTGATTCGGTGACGGCGGGAACTGGCGGGCGAGGTGGCCAG
GCGGCAGTGGCGGCGGCAGATGCCAATAAGGACGATGCAGCGCCAATGTT
CAATGGGTCAGTAGGAGGAGAAGCAGGAGGCAGCGGAGGGGGCGGAGACT
CATTTGCCGCGAGCGGCGCAACAGCGGCCGGTGTCGGGGATGGTGTGGAC
CCTACGATGATGATGGCGGATGTATTTTACGGTGTCCCCCAAGACCAGCA
ACTGGGGGAGAAAGGAGTGGAACTACCTCCGGGGTGGCGACAGCAGGGAT
CGGGAGGAGGGTTAGGGCTAGGGTATTCTGAGGGCCAGTTACAGCAGCAG
CAGCACCAAGGGCAGGGAGGTCAGCAGCCTGCCCAGCAGGAGCAGGCGCC
GCAAGCGTTCGAATGGGATTGGGAAGAATCGTGGGGCCAAGCGGCTCCTT
GGAGTGGGACGGGCTGGACTGCACCCCCATCGCCTGGAGGGTCGCTGGAA
TTCCCTGCTCGCGACGGTTGTGGAAGCAGTGCCGTAGCCCCTCCCCCATT
ACAGCAACATGGTGAAGCACCAGCAAATATGTGGGGTTTCCAGAGTGCTT
CGGAGGGGGTGGGGGGGGCTGGACTGCACCCCCATCGCCTGGAGGGTCGC
TGGAATTCCCTGCTCGCGACGGTTGTGGAAGCAGTGCCGTAGCCCCTCCC
CCATTACAGCAACATGGTGAAGCACCAGCAAATATGTGGGGTTTCCAGAG
TGCTTCGGAGGGGGTGGGGGGG
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