mRNA_H-paniculata_contig4659.11613.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4659.11613.1
Unique NamemRNA_H-paniculata_contig4659.11613.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4659.11613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4659contigH-paniculata_contig4659:10371..10807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size439
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930389.200896-UTR-H-paniculata_contig4659:10370..105041622930389.200896-UTR-H-paniculata_contig4659:10370..10504Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4659 10371..10504 +
1691481269.532526-UTR-H-paniculata_contig4659:10370..105041691481269.532526-UTR-H-paniculata_contig4659:10370..10504Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4659 10371..10504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930389.2195427-CDS-H-paniculata_contig4659:10504..108071622930389.2195427-CDS-H-paniculata_contig4659:10504..10807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4659 10505..10807 +
1691481269.542556-CDS-H-paniculata_contig4659:10504..108071691481269.542556-CDS-H-paniculata_contig4659:10504..10807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4659 10505..10807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4659.11613.1prot_H-paniculata_contig4659.11613.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4659 10505..10807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4659.11613.1

>prot_H-paniculata_contig4659.11613.1 ID=prot_H-paniculata_contig4659.11613.1|Name=mRNA_H-paniculata_contig4659.11613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MNLETCSYLDSHGKCLSLAPFSKYSLQVQCNFNSNSTELQFFFFLSPSDN
CRLRTGCWESSKVRSQGKKNELRTKQEKFKPNNNHVLYSNSRSTGNARGR
K
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mRNA from alignment at H-paniculata_contig4659:10371..10807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4659.11613.1 ID=mRNA_H-paniculata_contig4659.11613.1|Name=mRNA_H-paniculata_contig4659.11613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=437bp|location=Sequence derived from alignment at H-paniculata_contig4659:10371..10807+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGATTAGGGATAAACTCTCTTGTTGGGGTTGAAGTTCCGTTGAATTTG
AATGGAACACTTCGAAAATGGTGCTAGGGAAAGGTACCTTCCAGTGCGAG
TTCGTGTTCATTTCACTGCTATTTACTCTGCACAATGAATTTGGAAACCT
GTTCTTACCTCGATTCGCACGGAAAGTGCCTTTCGTTAGCTCCATTTTCG
AAGTATTCACTTCAAGTTCAATGCAACTTCAATTCAAATTCAACGGAACT
TCAATTCTTCTTCTTCTTATCGCCTTCTGACAATTGCAGACTCAGAACTG
GCTGTTGGGAATCTTCAAAAGTACGCTCACAAGGTAAGAAAAATGAACTG
CGGACGAAACAAGAAAAATTCAAACCTAATAATAACCACGTGTTGTACTC
GAATTCTCGATCTACAGGAAACGCTCGTGGACGAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4659:10371..10807+

>mRNA_H-paniculata_contig4659.11613.1 ID=mRNA_H-paniculata_contig4659.11613.1|Name=mRNA_H-paniculata_contig4659.11613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig4659:10371..10807+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATTTGGAAACCTGTTCTTACCTCGATTCGCACGGAAAGTGCCTTTC
GTTAGCTCCATTTTCGAAGTATTCACTTCAAGTTCAATGCAACTTCAATT
CAAATTCAACGGAACTTCAATTCTTCTTCTTCTTATCGCCTTCTGACAAT
TGCAGACTCAGAACTGGCTGTTGGGAATCTTCAAAAGTACGCTCACAAGG
TAAGAAAAATGAACTGCGGACGAAACAAGAAAAATTCAAACCTAATAATA
ACCACGTGTTGTACTCGAATTCTCGATCTACAGGAAACGCTCGTGGACGA
AAAATGAATTTGGAAACCTGTTCTTACCTCGATTCGCACGGAAAGTGCCT
TTCGTTAGCTCCATTTTCGAAGTATTCACTTCAAGTTCAATGCAACTTCA
ATTCAAATTCAACGGAACTTCAATTCTTCTTCTTCTTATCGCCTTCTGAC
AATTGCAGACTCAGAACTGGCTGTTGGGAATCTTCAAAAGTACGCTCACA
AGGTAAGAAAAATGAACTGCGGACGAAACAAGAAAAATTCAAACCTAATA
ATAACCACGTGTTGTACTCGAATTCTCGATCTACAGGAAACGCTCGTGGA
CGAAAA
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