mRNA_H-paniculata_contig4657.11611.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4657.11611.1 vs. uniprot
Match: D7G914_ECTSI (ER membrane protein complex subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G914_ECTSI) HSP 1 Score: 233 bits (595), Expect = 3.380e-69 Identity = 128/224 (57.14%), Postives = 165/224 (73.66%), Query Frame = 1
Query: 1 VTASARSVVVEHAFGPEAKFAVRGSIDLVVDPSREVPATASSLPARLEVADATQLKNLVDDDGLYLIKLATDDSSGNSVIAAVPACHLRLSGFREDITLHVEWGGTIIGLDYKAPVGPLASTRDCKKMPVPESTQITTTIKVVRAASAQSIPLQVLTQNPPPGLMHLKENHGSQDPAAVGSQSIIVKYWYIFLPLVITWMFSTGPGPAEQGTSGSGAGGQPGGR 672
V ASARS+ VEHAFGP A++ RG ++L +DPSR +AS PA L DA+Q++ L+ +DGLYLI++ATD+SS V+AAV AC LRL+ FRE+ITLHVE G I+G+DYK+ VGPLASTR+C KMPV E +++ T + VVRAASAQS+PLQVL +PPPGL LKE G++D A G+QS++VKYWYIFLP V+ +MFS P + G + A G GGR
Sbjct: 16 VQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLR--DASQMEELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSLVGPLASTRNCTKMPVAEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSA---PDQGGAATPPAAG--GGR 232
BLAST of mRNA_H-paniculata_contig4657.11611.1 vs. uniprot
Match: A0A7S2SU16_9STRA (ER membrane protein complex subunit 10 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU16_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 5.140e-15 Identity = 70/221 (31.67%), Postives = 111/221 (50.23%), Query Frame = 1
Query: 31 EHAFGPEAK-FAVRGSIDLVVDPSREVPATASSLPARLEVADATQLKNLVDDDGLYLIKLATDDSSGNS--VIAAVPACHLRLSGFREDITLHVEWGGTIIGLDYKAPVGPLASTRDCKKMPV-PESTQITTTIKVVRAASAQSIPLQVLTQNP---PPGLMHLKENHG----SQDPAAVGSQSIIVKYWYIFLPLVITWMFSTG-PGPAE-QGTSGSGAG 654
EH+ P++ F+ RGS++ + R V + L + TQ + L G Y I+ + + +S V+AA+ AC L ++GF+E++ L ++ G +I +DY+ P A+ RDC + + P ++ V + AQ IPLQ P PPG+ ++ + QDP QS I + WYI LP+V+ + S P PA QG G+GAG
Sbjct: 54 EHSLSPDSDAFSPRGSMEFALGARRTVQFSEG---LALTSEETTQFRALATQGGFYRIRTRSSPFNASSPYVMAAIRACDLAVTGFKEEMKLFLDPEGNLISMDYRTPASFFAAKRDCTRPEIYPAEAAFSSAGSFVGSTPAQQIPLQ--PDGPAKLPPGMQGVQGMNNLDPKKQDPRQ--QQSFIRRNWYIILPIVLFLLTSGAEPPPAGGQGQEGAGAG 267
BLAST of mRNA_H-paniculata_contig4657.11611.1 vs. uniprot
Match: A0A835Z4G5_9STRA (SWIB/MDM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G5_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 5.460e-12 Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = 1
Query: 217 DSSGNSVIAAVPACHLRLSGFREDITLHVEWGGTIIGLDYKAPVGPLASTRDCKKMPVPESTQITTTIKVVRAASAQSIPLQVLTQNPPPGLMHLKE-----NHGSQDPAAVGSQSIIVKYWYIFLPLVITWMFSTGPGPAEQGTSGSGAGGQPGGR 672
D G V+A C L +GF+E+I LH G+++GLDY AP GPL+ TRDC++ +P + T + + A+AQ I +Q +PPPGL L+ G++ G + +Y ++ L+ ++ TG E T G+ G PG R
Sbjct: 590 DMRGYEVVAH-DLCDLYKAGFKEEIILHTAQDGSVVGLDYTAPQGPLSLTRDCQRARLPAKVVVQTAVTMAAPAAAQIIEVQATAPHPPPGLQQLQALVQPPGEGAKPQHPTGIMDLFKRYGHVHTRLLRQYL-KTGL-VDEDYTPFLGSAGPPGSR 743
BLAST of mRNA_H-paniculata_contig4657.11611.1 vs. uniprot
Match: A0A024GPT7_9STRA (ER membrane protein complex subunit 10 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GPT7_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.590e-10 Identity = 65/228 (28.51%), Postives = 113/228 (49.56%), Query Frame = 1
Query: 10 SARSVVVEHAFGPEAK--FAVRGSIDL-VVDPSREVPATASSLPARLEVADATQLKNLVDDDGLYLIKLATDDSSGNS--VIAAVPACHLRLSGFREDITLHVEWGGTIIGLDYKAPVGPLASTRDCKKMPVPESTQITTTIKVVRAASAQSIPLQ---VLTQNPPPGLMHLKENHGSQDPAAVGSQSIIVKYWYIFLPLVITWMFSTGP---GPAEQGTSGSGAGGQ 660
SA S +EH E++ F+VR +D+ + DP+ +V + + LE +L+N++ LY I+ +D S +S V ++P C L + FRED++ H+ ++G++Y+ PL + + + P+ T IT+ + + IP + +N PPG++ ++ Q AA + SI+ KYWYI LP+++ +F PA SG G Q
Sbjct: 34 SAISFQIEHNVPSESEGDFSVRSRVDINLEDPNSKV--RILQIFSSLERGQVEKLQNMLVASELYTIRARSDPSDPSSPYVYTSIPLCMLASANFREDLSFHLTEDKKLLGMEYRT-FTPLDKCSNNQNIVTPDLT-ITSYGFALEPSLGPEIPKEPNFARGKNIPPGVV-VEPTKEEQKKAAEENPSILRKYWYIILPILVFTLFGAEAPQTSPATASASGPATGQQ 256
BLAST of mRNA_H-paniculata_contig4657.11611.1 vs. uniprot
Match: A0A7S1CY99_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CY99_CYCTE) HSP 1 Score: 71.2 bits (173), Expect = 7.080e-10 Identity = 60/216 (27.78%), Postives = 98/216 (45.37%), Query Frame = 1
Query: 34 HAFGPEAKFAVRGSIDLVVDPSREVPATASSLPARLEVADATQLKNLVDDDGLYLIKLATDDSSGNSVIAAVPACHLRLSGFREDITLHVEWGGTIIGLDYKAPVGPLASTRDCKKMPVPESTQITTTIKVVRAASAQSIPLQVLTQNPPPGLMHLKENHGSQ---------DPAAVGSQSIIVKYWYIFLPLVITWMFSTGPGPAEQGTSGSGAG 654
H+F ++ F RG + L + S P+ +L + D+ + ++V+ + LY +KL DD++GN V+A+VPAC ++ + FRE+ + + L Y V LA C ++ + + + I A A +IP + P GL + G+Q P S +++YWYI LPL I + GP QG G G
Sbjct: 46 HSFDGQS-FNSRGQVRLSLSDSE--PSPEITLENDEKALDSASIDSMVE-NSLYQVKLV-DDTTGNFVMASVPACQVKRAQFREEFEVLFNDQAAPVSLTYTPLVSKLAPP--CSEVEISSEVKFQSRINYETATPAMAIPKVLPATKPQVGLTFFPRSQGAQAVPGAKQDGTPEVTTPVSFLMRYWYIALPLFIMGLI--GPAEDPQGQQQQGRG 252
BLAST of mRNA_H-paniculata_contig4657.11611.1 vs. uniprot
Match: A0A7S2SGJ4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SGJ4_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 5.170e-9 Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 1
Query: 193 YLIKLATDDSSGNSVIAAVPACHLRLSGFREDITLHVEWGGTIIGLDYKAPVGPLASTRDCKKMPVPESTQITTTIKVVRAASAQSIPLQVLTQNPPPGLMHL-KENHGSQDPA-----AVGSQ-SIIVKYWYIFLPLVIT 594
Y IK+ D + S +A+VPACH+R S RE++TL + G+++ + + PLA + + + T I + A + +IPL + + PPPG + G+ +PA A G Q S + KYWYI LP+++T
Sbjct: 88 YQIKVV-DPETQQSALASVPACHMRRSNLREEMTLTLGQSGSLLSVSLTPLISPLALPCEAIQA-ASDKISFQTVISLSTAQTGMTIPLVLPSVRPPPGYSWFPRTTTGNTNPAIQEQEAQGQQQSFLRKYWYIILPIMLT 226
BLAST of mRNA_H-paniculata_contig4657.11611.1 vs. uniprot
Match: F0W3R8_9STRA (Ubiquitin family protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3R8_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.950e-8 Identity = 56/208 (26.92%), Postives = 106/208 (50.96%), Query Frame = 1
Query: 10 SARSVVVEHAFGPEAK--FAVRGSIDL-VVDPSREVPATASSLPARLEVADATQLKNLVDDDGLYLIKLATDDSSGNS--VIAAVPACHLRLSGFREDITLHVEWGGTIIGLDYKA--PVGPLASTRDCKKMPVPESTQITTTIKVVRAASAQSIPLQVL---TQNPPPGLMHLKENHGSQDPAAVGSQSIIVKYWYIFLPLVITWMF 603
SA S +EH E++ F+VR +D+ + DP+ +V + L + LE +L+N++ LY I+ +D S +S V ++P C L + FRED++ H+ ++ ++Y+ P+ A+ + +P T+ ++ + IP + ++ PPG++ ++ Q AA + SI+ KYWYI LP+++ +F
Sbjct: 90 SAVSFHIEHNVPRESERDFSVRSRVDINLKDPNSKV--SILQLSSSLEGKQVGKLQNMLIASELYTIRARSDPSDPSSPYVYTSIPLCMLASTNFREDLSFHLTKDKNLLAMEYRTYTPLSNCATNGNI----IPSDFAFTSYGFALKPSPGPEIPTDTIFARDRSVPPGVV-VEPTKDEQKKAAEENPSILRKYWYIILPILVFTLF 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4657.11611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4657.11611.1 >prot_H-paniculata_contig4657.11611.1 ID=prot_H-paniculata_contig4657.11611.1|Name=mRNA_H-paniculata_contig4657.11611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp MPVPESTQITTTIKVVRAASAQSIPLQVLTQNPPPGLMHLKENHGSQDPAback to top mRNA from alignment at H-paniculata_contig4657:410..9665- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4657.11611.1 ID=mRNA_H-paniculata_contig4657.11611.1|Name=mRNA_H-paniculata_contig4657.11611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9256bp|location=Sequence derived from alignment at H-paniculata_contig4657:410..9665- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4657:410..9665- >mRNA_H-paniculata_contig4657.11611.1 ID=mRNA_H-paniculata_contig4657.11611.1|Name=mRNA_H-paniculata_contig4657.11611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig4657:410..9665- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |