mRNA_H-paniculata_contig4652.11607.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4652.11607.1
Unique NamemRNA_H-paniculata_contig4652.11607.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: A0A6H5JU83_9PHAE (DOT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU83_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.750e-29
Identity = 89/206 (43.20%), Postives = 123/206 (59.71%), Query Frame = 1 
Query:    1 QVDVTDFLSILDIAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAANDHVQTVRAFLTDSLDADVNNNTSHSNTKAGVNAGTKGYRSSTAAMLAAKTRTTPHGGGGGCNRGRXXXXXXXSNGRCGAKSADRGCSAEELEDIIATMLAQSASMSQGEPIREGGAP---------REATAEDVAARVVKELGHRR 591
            +VDV DFLSILD+ KP + E+FVDLGSGTGKAVL +ACGFPEF KCRGIELV+ L DAA DH+QT + FL     A  +N      T   ++A   G R++  A  A+  +     GGGG  +G+            G+K+ ++G +A +LE +IA +L++ AS S     RE             R A+AE++A+ +V+E+GHRR
Sbjct:   55 EVDVPDFLSILDLVKP-QNEVFVDLGSGTGKAVLTAACGFPEFLKCRGIELVQGLADAAADHLQTAKTFLATPR-APAHNMVP---TNDVMDAALAGERATPGAARASFGKKKLGQGGGGGRKGKKTS---------GSKALNQGLNACDLEALIAELLSRQASASHAGGERETSRNATATAARDLRGASAEEIASWLVREMGHRR 246
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: A0A1F7H087_9BACT (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_37_24 TaxID=1802037 RepID=A0A1F7H087_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 6.650e-7
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    1 QVDVTDFLSILDIAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAAN--------------DHVQTVRAFLTD 216
            ++D   F  ILDI KP  GE+F DLGSGTGK V+++A  FP FSK  G+E++  L + +               DHV+ ++A L D
Sbjct:   41 EIDFESFKKILDITKPQAGEVFYDLGSGTGKPVISAALLFP-FSKLYGLEILNDLHELSKKILEEFEILYPDYADHVEFIKADLMD 125
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: A0A0G4EMU0_VITBC (DOT1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMU0_VITBC)

HSP 1 Score: 61.2 bits (147), Expect = 1.160e-6
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    1 QVDVTDFLSILDIAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAANDHVQTVRA 204
            +VD+     +L  A+P +GE FVDLGSG G+AVL +A  +P F KC GIE ++   D A  +V   R+
Sbjct:  133 EVDLNFLAVLLRAAEPKQGETFVDLGSGLGRAVLGAAALYPSFRKCTGIEYLQGRTDLAKTYVSRFRS 200
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: A0A7S0HXH4_9CRYP (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HXH4_9CRYP)

HSP 1 Score: 56.2 bits (134), Expect = 3.520e-6
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 QVDVTDFLSILDIAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAA 177
            ++  + F  IL + +P +GE FVDLGSGTGKAV+ +A  FP FS+  GIE V+ L  AA
Sbjct:    1 EISPSSFAEILHLVQPKQGETFVDLGSGTGKAVIVAASLFP-FSEAIGIEFVEPLHKAA 58
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: L1J588_GUITC (DOT1 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J588_GUITC)

HSP 1 Score: 58.5 bits (140), Expect = 4.260e-6
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 QVDVTDFLSILDIAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAA 177
            ++  + F  IL + +P EGEIFVDLGSGTGKAVL +A  FP FS+  GIE V+ L  AA
Sbjct:   44 EISPSSFAEILCLVQPKEGEIFVDLGSGTGKAVLLAASLFP-FSESIGIEFVEPLHKAA 101
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: A0A085WVQ7_9DELT (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Hyalangium minutum TaxID=394096 RepID=A0A085WVQ7_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   19 FLSILDIAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAANDHV 189
            F+ ++  A PTEG++F+DLGSGTGKA   +A  FP  SK  G+EL+  L D A + +
Sbjct:   47 FVELMAAASPTEGDVFIDLGSGTGKATFMAALSFP-LSKSMGVELLPGLGDLARERL 102
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: A0A812VUJ9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812VUJ9_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 1.560e-5
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 QVDVTDFLSILD-IAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAA 177
            +V+   F ++L  +A+P  GE F+DLGSGTG+A+LA+A GFP    CRG EL++ L  AA
Sbjct:  834 EVEFAPFCALLQRVAQPQPGETFLDLGSGTGRALLAAALGFPSLRCCRGYELLEPLHAAA 893
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: A0A812UV67_SYMPI (ANK1 protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812UV67_SYMPI)

HSP 1 Score: 54.7 bits (130), Expect = 1.570e-5
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 QVDVTDFLSILD-IAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAA 177
            +V+   F  +L+ +A+P  GE F+DLGSG+G+AVLA+A  FP    CRG EL+  L  AA
Sbjct:   31 EVEFAPFCQLLNRVAQPQPGETFLDLGSGSGRAVLAAALAFPGLRCCRGYELLGPLHAAA 90
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: A0A813A5Y3_9DINO (ANK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A5Y3_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 2.790e-5
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 QVDVTDFLSILD-IAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAA 177
            +V+   F ++L  +A+P  GE F+DLGSGTG+AVL +A GFP    CRG EL++ L  AA
Sbjct:  947 EVEFAPFRALLQRVAQPQPGETFLDLGSGTGRAVLVAALGFPSLRCCRGYELLEPLHAAA 1006
[Close]
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Match: A0A1Q9EUD7_SYMMI (Ankyrin-1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EUD7_SYMMI)

HSP 1 Score: 58.5 bits (140), Expect = 2.950e-5
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 QVDVTDFLSILD-IAKPTEGEIFVDLGSGTGKAVLASACGFPEFSKCRGIELVKSLVDAA 177
            +V+   F ++L  +A+P  GE F+DLGSGTG+AVL +A GFP    CRG EL++ L  AA
Sbjct: 1283 EVEFAPFRALLQRVAQPQPGETFLDLGSGTGRAVLVAALGFPSLRCCRGYELLEPLHAAA 1342
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4652.11607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JU83_9PHAE1.750e-2943.20DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A1F7H087_9BACT6.650e-740.70Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A0G4EMU0_VITBC1.160e-644.12DOT1 domain-containing protein n=2 Tax=Vitrella br... [more]
A0A7S0HXH4_9CRYP3.520e-650.85Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
L1J588_GUITC4.260e-655.93DOT1 domain-containing protein n=1 Tax=Guillardia ... [more]
A0A085WVQ7_9DELT1.500e-547.37Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A812VUJ9_9DINO1.560e-550.00Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812UV67_SYMPI1.570e-548.33ANK1 protein (Fragment) n=1 Tax=Symbiodinium pilos... [more]
A0A813A5Y3_9DINO2.790e-550.00ANK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A1Q9EUD7_SYMMI2.950e-550.00Ankyrin-1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4652contigH-paniculata_contig4652:8210..14688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-16_000810.1
Exons4
Model size1571
Cds size1257
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4652.11607.1prot_H-paniculata_contig4652.11607.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4652 9967..14686 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930388.243238-UTR-H-paniculata_contig4652:8209..83441622930388.243238-UTR-H-paniculata_contig4652:8209..8344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 8210..8344 +
1691481269.0169497-UTR-H-paniculata_contig4652:8209..83441691481269.0169497-UTR-H-paniculata_contig4652:8209..8344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 8210..8344 +
1622930388.2551494-UTR-H-paniculata_contig4652:9789..99661622930388.2551494-UTR-H-paniculata_contig4652:9789..9966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 9790..9966 +
1691481269.0270016-UTR-H-paniculata_contig4652:9789..99661691481269.0270016-UTR-H-paniculata_contig4652:9789..9966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 9790..9966 +
1622930388.3107493-UTR-H-paniculata_contig4652:14686..146881622930388.3107493-UTR-H-paniculata_contig4652:14686..14688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 14687..14688 +
1691481269.065209-UTR-H-paniculata_contig4652:14686..146881691481269.065209-UTR-H-paniculata_contig4652:14686..14688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4652 14687..14688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930388.267164-CDS-H-paniculata_contig4652:9966..102441622930388.267164-CDS-H-paniculata_contig4652:9966..10244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4652 9967..10244 +
1691481269.0359802-CDS-H-paniculata_contig4652:9966..102441691481269.0359802-CDS-H-paniculata_contig4652:9966..10244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4652 9967..10244 +
1622930388.2832038-CDS-H-paniculata_contig4652:10635..112741622930388.2832038-CDS-H-paniculata_contig4652:10635..11274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4652 10636..11274 +
1691481269.044769-CDS-H-paniculata_contig4652:10635..112741691481269.044769-CDS-H-paniculata_contig4652:10635..11274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4652 10636..11274 +
1622930388.2961428-CDS-H-paniculata_contig4652:14346..146861622930388.2961428-CDS-H-paniculata_contig4652:14346..14686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4652 14347..14686 +
1691481269.055942-CDS-H-paniculata_contig4652:14346..146861691481269.055942-CDS-H-paniculata_contig4652:14346..14686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4652 14347..14686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4652.11607.1

>prot_H-paniculata_contig4652.11607.1 ID=prot_H-paniculata_contig4652.11607.1|Name=mRNA_H-paniculata_contig4652.11607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=419bp
MLAAKTRTTPHGGGGGCNRGRNNGKNKGSNGRCGAKSADRGCSAEELEDI
IATMLAQSASMSQGEPIREGGAPREATAEDVAARVVKELGHRRYKASLRG
YGGLQKFLAGLRERQTSGRLDVSPDGSTVMLRPTVASIVPGDVQTPPARD
VETRNGSDSAADALDVGLRVTSSIPDESTDSPPGGERQHLPFEAAVESSS
SLSSTPGLSAPNCTVPTPPPISCGTSSGHAKPTTPSSYRFSGPLSSSPLD
AQVWSEASISETRSGDVDDPKIENVGRRRLPEAGPITCESLDCIEMICGD
IFQEPWHDAGVVYVASLLFDDFMMARLTECVGKLQKGARIISLRPIISRD
IGTGSSEVYGLDGTADGNATEGCDEAAEESSGSRSATAAGLPPALRLLHE
GVFRMSWQMARVYIYVRV*
back to top

mRNA from alignment at H-paniculata_contig4652:8210..14688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4652.11607.1 ID=mRNA_H-paniculata_contig4652.11607.1|Name=mRNA_H-paniculata_contig4652.11607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6479bp|location=Sequence derived from alignment at H-paniculata_contig4652:8210..14688+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTGACGTTACCGACTTCCTGTCGATTTTGGATATCGCCAAACCGAC
CGAGGGAGAAATTTTCGTCGACCTGGGATCGGGCACGGGCAAGGCCGTGT
TGGCTTCTGCGTGCGGTTTTCCCGAGTTTTCGAAGGTGAGCTTTTTCTCT
CTCGTACTCGCTCCCCACTACTCCAGCTGGCCCCTAAGAACCCAGACTGC
TGTGTCGCGTTTGTAACTGTGATAAGTGAATTGACAGTCCCACCCACGAC
CGTTCGTATTGATCGTTGCGGTGCCGCTCCGCGGCGCAGAGTTTGGGACA
ATTTTAACGCTAGCCCCAATTTAACTTCATGAAAAGATAGGTGCAATCGT
TAGGATCAAGTTTTTCTGGTCAAGGTTAGCTGCTCCGCCCTACCCGCGCT
CTCCCCCAAACTGCAAGGAACAACCATGGAGTTTTGGGCACCAAACGTTT
ACAGTATGTTTTCATGAATGTATATTTTTTTATCTCTACTGTACTACAGT
GACTGTACCGATATAAGAGAAAATGGGATATCAAAGAGGATAAATTGCGT
TGGCACGACTGTGACGGCTATAAGAGCGGCTTCGGTGTTTTCGGCCAAAA
TGTCTCTTGAATCGAGCAGAGCCATGAAATTATTACTCGTTGACCGACGG
AATTTGACGAAAAATTGCTTCTGATGTGAAGAGTATATATATATATATAT
ATATATATTTTTTTTTAGCACAGAACTACAGCTTCCCGAAGACTACAGTA
CATCAGTGCATCACAAGTTGAAGTACTTCGGTACGGAAGCATCGGATAGA
GGTTTTTGCCGTAGCCTTCCGGGGGTTAAAAATAAACCGATCACAAGTTG
AACTGCAGATTAAACGATGCCCTGCGCAGCGGGATCCAGCTACAACATGA
AGGGCCGTACACCTGGCCCTCCACAATATACATGCCCCAAGTACCGCTTT
TGTTGCGGCTATCTACATATCGCTTGCGGGGTCATGGATCCTGCTGGTGA
CAACGTAACTATGATTCCTTTTAAGAGAAAAGCGCTCTTATATAATTAGA
GGGGATCAGGATATAAGAGGGTTTTTTCCCGCTTGCCCCTATCTTCTCTT
ATGTCGGTATACCCACTGTATAGTACAGTGGAGCATTATCCCTTTAGGAA
TCGAACTTCCGAACGACCAAAATACAGCTGTGCTACCGACAGTGGTGAAC
GCTGACGAATACGTCGGCAGAATGCCTGACTAACCCCAGAAAGCTTGTTA
GTGCATCTCAGGCGCAAATAGGATAATTTTTCACCATTTGGGGGGGCTTA
TATTGGATTTTGTCTGTTGGAAGAACAGGCAAATACCGGACGTATTTCGT
AAGGATAAACTAATAAACAAGCACTCCACAGTTCATGAGGGGTTCAGAAG
TTCGTAACGGTCAATAATAATACAAATAATAATGATCACAATAGCCTGCA
GCATCCCCATCACAATTACAGCACCCATGTACGTTCAACCGTAGGCTTCG
CTTACGAAGGTTATGGCAGCCAACCACCTTGACGCCCCGCCCACATCGAC
CGCCTTGGTCCCCTGCCCACGCTCTACCAGTGCCGTGGCATCGAGCTCGT
CAAAAGCCTGGTCGATGCAGCCAACGACCACGTGCAAACGGTGCGTGCCT
TTCTCACCGACAGCCTTGATGCCGACGTCAACAATAATACCTCCCACTCC
AATACCAAAGCCGGCGTTAATGCTGGTACCAAGGGATATCGCAGCAGCAC
TGCTGCCATGCTAGCTGCTAAAACTCGAACAACGCCGCACGGTGGCGGCG
GTGGATGCAACAGAGGCAGAAACAACGGCAAGAACAAAGGGAGTAATGGT
CGGTGTGGTGCTAAGTCGGCCGATCGGGGCTGTAGCGCAGAGGAGCTGGA
GGATATTATCGCGACCATGCTAGCTCAATCCGCTTCGATGTCGCAAGGCG
AGCCGATACGCGAAGGTGGGGCACCGCGAGAGGCGACAGCGGAGGACGTC
GCTGCTCGGGTTGTTAAGGAGCTGGGACATCGGCGGTGGGTTGACGGTCG
TAGAATATCCTTCGGGCTTGTGGAGCCCTCGTTAGTCCGCCCATTACGTT
GTGTGTTTGCTTCATGTGCTGCGACTGTTTCAGTCGGCGTGCTCTTAACG
CTACAGTTGTTCACAGCAAACGTAAGCGTATTTGTTCATGCTTGAGGCAA
ACCCATCTCCTGAGTTAAACAAAGCTCAAAGCTATGACCACCAACGACCC
CACCCACGAATGATATCATCCTGTACCCACGTCTCAAGTTTTGCATTCGA
GCTAACACTGTTTAACACCGCTGCTAAACTCATCCCCCCCCCTCCCCATC
GCCGCGCCGCATCATTCCCTCCAACGCGCCTATTTGCTCGCCGCATGTAC
CCCGGCTTGTTTATTTTGGCACCAAGGTATAAGGCCAGCTTGCGCGGGTA
CGGCGGCCTTCAAAAGTTCCTGGCGGGCTTAAGAGAACGCCAAACTTCAG
GGCGTCTCGACGTTTCTCCCGACGGTAGTACGGTGATGCTTAGGCCGACG
GTGGCGTCGATCGTTCCCGGGGACGTTCAGACGCCGCCAGCGCGCGACGT
GGAAACCAGGAACGGCAGTGACTCCGCAGCAGACGCCTTAGACGTCGGGC
TCCGAGTTACCTCCAGCATCCCAGACGAGAGTACTGATAGTCCCCCAGGC
GGTGAACGTCAACATCTCCCGTTCGAAGCAGCTGTAGAATCGAGTTCAAG
CTTATCTTCAACGCCGGGCCTTAGTGCGCCAAATTGCACGGTTCCAACAC
CGCCGCCGATATCTTGTGGGACCTCTAGTGGACATGCGAAGCCGACAACG
CCATCTTCTTACCGTTTTTCTGGGCCGTTGTCGTCATCGCCGCTCGACGC
CCAAGTTTGGAGCGAGGCAAGCATTAGTGAAACAAGGAGTGGCGATGTAG
ACGATCCGAAAATTGAGAACGTCGGTAGGAGGCGTTTGCCGGAGGCGGGT
CCTATCACGTGCGAGTCTCTGGATTGCATAGAAATGATCTGCGGAGATAT
ATTTCAGGAGCCATGGTGAGCGAGTCTCGTTTTTGGAAGTGTGTTTCTGG
AGGGTACAAGTTGCGTGTTTACGGATGTGCGTAAAAACAACACTCACCGG
ATAAAAATGAATACTGCGGATGGTTGAGAAGATAAATTTACCTTTATTTG
CCTGCAGGTTTCTCGTAAGCACGTTTTTTTTTTTTAATGTGTCCTGAACC
GTTTACGACTGTGATGAATACTACTAAAACGGAGAAACAGAAGCGAAAAC
TGTACTTTTTATGTGCCTGTACATGCGGAAACTCAGACGAATGCGTTTCA
AAACTTTCGTCTGAGCCACTTGAAGCATTGGCATTCACCCCGGGGGTTGA
CAAACAGGCAGTCATGTATTCTGGCTGTGTGGACTGTTGTGTAGAATCTG
CCGAGATCCGGTTTTCTTGGGACCCCGTGTGTCTCCCAATGACTTGCTGG
GGGGGGCTTTGAAGGCTCGTGAGCTCACGCGCAGCGTCGTTGAAGCCATA
AGGACTTGTTTGGAAGCCACGAAGACCGAGAGGTTTTACTTCGCCCGCGT
GCTGCTCATGTTGTAGGACGGGGTGTCTCAATTGTTGCCACCGCGCTTCC
CAGCTCTATCATCCGTTGACTGTACTACATTCGATCTTCCCCACCCAACC
TGCACCTCGCCACCTCGTTCTGCTTTTCCCTTCTACTACACAACTTGGGC
GCTCAATGATTTCATGCACTGTTAGCATTGCTATTTTTTTTTTTTTTAAC
TTGTCCACTGGATCTTCCAGGGATTCCAAATCATCCCCGAAACAATCTGC
ACATAGCCGACGCCTACGACAGACAGGTTTTACTTGATTAATGTATCGAA
ACCATGTTGCAATTCACCGGTGCACATGTGGCGTTGTGTGGACAGGCGCT
GGGCATACACATGCGCGCATACGAGGTCTCTAGGACGGTGTAGGTAAATT
TTTACATGAATCATTCCTTGAAAAAGTTGCAGCCGAAACAAACTATTTTT
CCTATTTGAAAAAAAATCATACGCTATTTGTAGGCGCGTTGCGGATCCTC
GTCAAAACCGTCCAGTAGCTTTTGTAGCTCTGGTTTTGCCCAACACAGCG
CAACAAGACTCACTATAGAATCCGTTGAGTTGGCGACGAGATTGGTTGTC
TCTACTGTGGGGTATTCGGAATTCCAGCATGCTTCCACGTGCTCTGTTTT
CAAGTTGTTTGGAAACTACACAAATTTGGTTCGCATAGCAGAAAACAGAA
AAATAGGATCAAATTAGGGTCGCGTTGCAGAGCACACCATAGCAAACCAT
AACGTCGCACAGCTGATACTGTGGCGTCGGAGGCAGCACACACGTGCCAG
CGACGACTAGCGGTTACTACCGTGGCTGCATGGGGTGTCTTTGCAATCGG
GACAACGGTTGCTCAAACTCAACTGGTAGGCGCTGCAGAGAGGCATACAC
TCAGTACCACAATCAGTCAATCAGCGCTGTCATAAAACAAAAAATCGAGC
TCTCACCAAGCTTTTAGTAACATCTTCAAAACGCAAGGGTGGTGAGTACC
ACAGCCAAAGCAAGGGTAATCGAGATACAAGAGCAGCTCGTGAATAGGTT
GTCGTATGCCGTGTATGTGTCTGCTTGGCGCCATGTGTTGTGTGCTGCTG
CTGCTACTACTCTGGATTTGTGTCGGGAGCTGCATGTGTGTAACTTGCCG
AATCCCTTCGTTTGTTGTGACACTATGCCGCTCATACAATTTGTTATCAA
CATTATTAACAACATATTTCAGGATATATGTTTTTTTCCAACTTGAAAAT
TCCTTAGAAAATAACGCATTTTGATTAGCTGAATTTTTTTCATTAGCAGG
GCTAACTGTTAAGAGGAAACGATAGGGGTGGTCCACGGTTGAAAACCTGT
TCACAAGATGACTTTTTATGTTTTCAGACCTGACCAAATGTTTCAAATGA
GCCAATCAGAAAGGCACACGCGAGAACCCGCAATAACCGATCGAACTGAA
ATGACGCAAGTTGGTCGGCACAACATACAAGAGGCATGGCCAAGCGCTGT
GCACTATCTGAGCTGCCGCCTAATGCCGTCTGGGTCACTCCCCCGGATCC
TGTGGCTAGACCGCGTCACCAGCGGCAATGCCCAAGCCATCTCTCTCCAC
GCCGACTTTCAATTTCCACGCAGCTTGATGGCTTGAAAGGCTTCTACCAG
TTCTCGTTTTGATCTGTTTGGGCTCTAGCTGTTTACTTTTTTTGGCTTGG
CCAGGTGCCTTGGTTTTTCGACGGGTGCCCATATTCTCGTATTGCTGATC
TTTACAGCTACTAAAACGCACAGAAGGGGGTGGGGCAGGTCTTGTCGAGC
GATGTGGTCCACTGCCTGTACTGGCTGTTGTGCTGCTGTACACCGGCCAC
GGGGTGGCTTCAACCCCGCCAGCGACTATACCGGCCTGAAAAGAATTGTG
TAGTGTCACTCCCTCAGTATTCTTTTTTCAATCTTGCTAAGATGCTGCTC
AATTGAGGTACATGGCTCTGTACTTGGAACTTTGAAAAGAAACGCATAGC
CAAGTTATGCTGTTACGTTCTATATTGTTTTATACTTTAAAATTTAGTAT
AGAAAAACTTGGCCGCATGGCAAACCGTGTAATCTTTGATGGTGCACTGC
TCGTTGATAACTGCAAAGGGTCGTGCGCGGTTCTTGTGCTGTGTTCGTTG
TGACCAGTACTAGTGTATGTATAGTGGCCATTTTGGCTCAACAAAGAATT
GAGCGAGCTACGGACAGAAATATCTTCAAAATACACTATTTTCGTGACGT
GTCACCAGTGTAAGACGAATCCAAAGTCACCACTCCACATGCACTAAATC
ACAGCTGTCGACATGCATTTAGTACATTGGTATTAGCCAGTTCGATTTCA
GAGCTAAGATTTTCTCGATATAGGGTTTAATACTTGAACAAAGAAATTCG
TATTTTTTGGGCTATGACGTGAAAACAACAAATAGGGGGATTCTCAGTTT
GGTCTTTGGAACCGGTTTTGGATCATCGACCACCCCCCGTATTGCTTTCC
CTAATTCTGTACTTTTGTTCTGTGCTGAATGAAAAAGGCACGATGCCGGC
GTGGTCTATGTGGCGTCGTTGCTCTTCGATGACTTCATGATGGCTCGCCT
CACCGAGTGCGTAGGAAAGCTGCAGAAGGGAGCCCGAATAATATCTCTTC
GGCCGATCATCTCTCGGGATATTGGTACAGGTAGTAGTGAGGTTTATGGT
TTGGACGGCACGGCCGATGGAAATGCGACAGAAGGTTGTGACGAGGCAGC
AGAAGAAAGCTCTGGCTCCCGATCAGCCACAGCCGCCGGTTTGCCCCCTG
CGTTGCGTCTTCTTCACGAGGGTGTGTTCAGGATGAGCTGGCAGATGGCT
CGGGTGTACATTTACGTGCGAGTGTGACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4652:8210..14688+

>mRNA_H-paniculata_contig4652.11607.1 ID=mRNA_H-paniculata_contig4652.11607.1|Name=mRNA_H-paniculata_contig4652.11607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2514bp|location=Sequence derived from alignment at H-paniculata_contig4652:8210..14688+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGCTGCTAAAACTCGAACAACGCCGCACGGTGGCGGCGGTGGATG
CAACAGAGGCAGAAACAACGGCAAGAACAAAGGGAGTAATGGTCGGTGTG
GTGCTAAGTCGGCCGATCGGGGCTGTAGCGCAGAGGAGCTGGAGGATATT
ATCGCGACCATGCTAGCTCAATCCGCTTCGATGTCGCAAGGCGAGCCGAT
ACGCGAAGGTGGGGCACCGCGAGAGGCGACAGCGGAGGACGTCGCTGCTC
GGGTTGTTAAGGAGCTGGGACATCGGCGATGCTAGCTGCTAAAACTCGAA
CAACGCCGCACGGTGGCGGCGGTGGATGCAACAGAGGCAGAAACAACGGC
AAGAACAAAGGGAGTAATGGTCGGTGTGGTGCTAAGTCGGCCGATCGGGG
CTGTAGCGCAGAGGAGCTGGAGGATATTATCGCGACCATGCTAGCTCAAT
CCGCTTCGATGTCGCAAGGCGAGCCGATACGCGAAGGTGGGGCACCGCGA
GAGGCGACAGCGGAGGACGTCGCTGCTCGGGTTGTTAAGGAGCTGGGACA
TCGGCGGTATAAGGCCAGCTTGCGCGGGTACGGCGGCCTTCAAAAGTTCC
TGGCGGGCTTAAGAGAACGCCAAACTTCAGGGCGTCTCGACGTTTCTCCC
GACGGTAGTACGGTGATGCTTAGGCCGACGGTGGCGTCGATCGTTCCCGG
GGACGTTCAGACGCCGCCAGCGCGCGACGTGGAAACCAGGAACGGCAGTG
ACTCCGCAGCAGACGCCTTAGACGTCGGGCTCCGAGTTACCTCCAGCATC
CCAGACGAGAGTACTGATAGTCCCCCAGGCGGTGAACGTCAACATCTCCC
GTTCGAAGCAGCTGTAGAATCGAGTTCAAGCTTATCTTCAACGCCGGGCC
TTAGTGCGCCAAATTGCACGGTTCCAACACCGCCGCCGATATCTTGTGGG
ACCTCTAGTGGACATGCGAAGCCGACAACGCCATCTTCTTACCGTTTTTC
TGGGCCGTTGTCGTCATCGCCGCTCGACGCCCAAGTTTGGAGCGAGGCAA
GCATTAGTGAAACAAGGAGTGGCGATGTAGACGATCCGAAAATTGAGAAC
GTCGGTAGGAGGCGTTTGCCGGAGGCGGGTCCTATCACGTGCGAGTCTCT
GGATTGCATAGAAATGATCTGCGGAGATATATTTCAGGAGCCATGGTATA
AGGCCAGCTTGCGCGGGTACGGCGGCCTTCAAAAGTTCCTGGCGGGCTTA
AGAGAACGCCAAACTTCAGGGCGTCTCGACGTTTCTCCCGACGGTAGTAC
GGTGATGCTTAGGCCGACGGTGGCGTCGATCGTTCCCGGGGACGTTCAGA
CGCCGCCAGCGCGCGACGTGGAAACCAGGAACGGCAGTGACTCCGCAGCA
GACGCCTTAGACGTCGGGCTCCGAGTTACCTCCAGCATCCCAGACGAGAG
TACTGATAGTCCCCCAGGCGGTGAACGTCAACATCTCCCGTTCGAAGCAG
CTGTAGAATCGAGTTCAAGCTTATCTTCAACGCCGGGCCTTAGTGCGCCA
AATTGCACGGTTCCAACACCGCCGCCGATATCTTGTGGGACCTCTAGTGG
ACATGCGAAGCCGACAACGCCATCTTCTTACCGTTTTTCTGGGCCGTTGT
CGTCATCGCCGCTCGACGCCCAAGTTTGGAGCGAGGCAAGCATTAGTGAA
ACAAGGAGTGGCGATGTAGACGATCCGAAAATTGAGAACGTCGGTAGGAG
GCGTTTGCCGGAGGCGGGTCCTATCACGTGCGAGTCTCTGGATTGCATAG
AAATGATCTGCGGAGATATATTTCAGGAGCCATGGCACGATGCCGGCGTG
GTCTATGTGGCGTCGTTGCTCTTCGATGACTTCATGATGGCTCGCCTCAC
CGAGTGCGTAGGAAAGCTGCAGAAGGGAGCCCGAATAATATCTCTTCGGC
CGATCATCTCTCGGGATATTGGTACAGGTAGTAGTGAGGTTTATGGTTTG
GACGGCACGGCCGATGGAAATGCGACAGAAGGTTGTGACGAGGCAGCAGA
AGAAAGCTCTGGCTCCCGATCAGCCACAGCCGCCGGTTTGCCCCCTGCGT
TGCGTCTTCTTCACGAGGGTGTGTTCAGGATGAGCTGGCAGATGGCTCGG
GTGTACATTTACGTGCGAGTGTGAGCACGATGCCGGCGTGGTCTATGTGG
CGTCGTTGCTCTTCGATGACTTCATGATGGCTCGCCTCACCGAGTGCGTA
GGAAAGCTGCAGAAGGGAGCCCGAATAATATCTCTTCGGCCGATCATCTC
TCGGGATATTGGTACAGGTAGTAGTGAGGTTTATGGTTTGGACGGCACGG
CCGATGGAAATGCGACAGAAGGTTGTGACGAGGCAGCAGAAGAAAGCTCT
GGCTCCCGATCAGCCACAGCCGCCGGTTTGCCCCCTGCGTTGCGTCTTCT
TCACGAGGGTGTGTTCAGGATGAGCTGGCAGATGGCTCGGGTGTACATTT
ACGTGCGAGTGTGA
back to top