prot_H-paniculata_contig4651.11604.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4651.11604.1
Unique Nameprot_H-paniculata_contig4651.11604.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length157
Homology
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BLAST of mRNA_H-paniculata_contig4651.11604.1 vs. uniprot
Match: D8LLJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLJ6_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.510e-56
Identity = 88/142 (61.97%), Postives = 109/142 (76.76%), Query Frame = 0 
Query:    1 MPFYQQIVTLKPRTNPVDITRIFRKLASNILMQGGMVRAVTNHGVRVLPYRFHSKYIVSETESRWFSSGRWVSAYFDVHPDVAKRCEELLFDEDTVLRVSTLRPRTKMDAMRSTHLKSNPWEIERAKRLGI--PIDSKCYTP 140
            M FYQQIVTL+PRTNP D+T IFR+ A+ IL +GG+VR+V NHGVRVLPYRFHSK+ + E + RWFSSGRW SAY+D  P VAK+ EE L+ ED V+RVST RP TKMD + STH +SNPW++E   R GI  P+ ++  TP
Sbjct:    1 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTP 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4651.11604.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLJ6_ECTSI1.510e-5661.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000529Ribosomal protein S6PFAMPF01250Ribosomal_S6coord: 4..103
e-value: 9.2E-13
score: 48.3
IPR014717Translation elongation factor EF1B/ribosomal protein S6GENE3D3.30.70.60coord: 1..128
e-value: 2.9E-17
score: 64.5
IPR035980Ribosomal protein S6 superfamilySUPERFAMILY54995Ribosomal protein S6coord: 1..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4651contigH-paniculata_contig4651:7919..13228 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4651.11604.1mRNA_H-paniculata_contig4651.11604.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4651 7812..14666 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4651.11604.1 ID=prot_H-paniculata_contig4651.11604.1|Name=mRNA_H-paniculata_contig4651.11604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MPFYQQIVTLKPRTNPVDITRIFRKLASNILMQGGMVRAVTNHGVRVLPY
RFHSKYIVSETESRWFSSGRWVSAYFDVHPDVAKRCEELLFDEDTVLRVS
TLRPRTKMDAMRSTHLKSNPWEIERAKRLGIPIDSKCYTPGPNASIGSNT
RRIGSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000529Ribosomal_S6
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR035980Ribosomal_S6_sf