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Homology
BLAST of mRNA_H-paniculata_contig4651.11604.1 vs. uniprot
Match: D8LLJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLJ6_ECTSI) HSP 1 Score: 182 bits (463), Expect = 7.490e-51 Identity = 88/142 (61.97%), Postives = 109/142 (76.76%), Query Frame = 3
Query: 108 MPFYQQIVTLKPRTNPVDITRIFRKLASNILMQGGMVRAVTNHGVRVLPYRFHSKYIVSETESRWFSSGRWVSAYFDVHPDVAKRCEELLFDEDTVLRVSTLRPRTKMDAMRSTHLKSNPWEIERAKRLGI--PIDSKCYTP 527
M FYQQIVTL+PRTNP D+T IFR+ A+ IL +GG+VR+V NHGVRVLPYRFHSK+ + E + RWFSSGRW SAY+D P VAK+ EE L+ ED V+RVST RP TKMD + STH +SNPW++E R GI P+ ++ TP
Sbjct: 1 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTP 142
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 184.1 |
| Seed ortholog evalue | 5e-44 |
| Seed eggNOG ortholog | 2880.D8LLJ6 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Ribosomal protein S6 |
| EggNOG OGs | 2E67R@1,2SCYQ@2759 |
| Ec32 ortholog description | Translation elongation factor EF1B/ribosomal protein S6 |
| Ec32 ortholog | Ec-04_005610.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 2016 |
| Cds size | 471 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4651.11604.1 >prot_H-paniculata_contig4651.11604.1 ID=prot_H-paniculata_contig4651.11604.1|Name=mRNA_H-paniculata_contig4651.11604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MPFYQQIVTLKPRTNPVDITRIFRKLASNILMQGGMVRAVTNHGVRVLPY RFHSKYIVSETESRWFSSGRWVSAYFDVHPDVAKRCEELLFDEDTVLRVS TLRPRTKMDAMRSTHLKSNPWEIERAKRLGIPIDSKCYTPGPNASIGSNT RRIGSA* back to topmRNA from alignment at H-paniculata_contig4651:7812..14666+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4651.11604.1 ID=mRNA_H-paniculata_contig4651.11604.1|Name=mRNA_H-paniculata_contig4651.11604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6855bp|location=Sequence derived from alignment at H-paniculata_contig4651:7812..14666+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GAGTGACACACAGTGTGTCTCCACCTTGGGTAGGTACTGTAGACATAGGG
GAGTAGAGAAGGGCAGGCGAACGGTGAATTTCTTTTTCATTGAAGTGGAG
GACAAGGATGCCTTTCTATCAGCAGGTGGGTCAATTCTGGCTGTTGATCT
TGAAGCCTTGCTAGGGTGGCCATGGGTTTGTTCCTATTATCTGTACTGAA
GTGCCTGCTGGTCTGGTGCTGATCTAGAGAGGAGACTGAGTCGCGAAGGC
CGTACTCGAGGTTTATGTCTTCTTCTCTGCTGTCTTTTTTATCAAGCTTT
GTGCAAAAAGAAAAGATTTTCCGTCGGTGCTGGTCGAGATGACATACAGG
ATTCTGCATTAATCAATACATTGCCGTCTTATACATTGTACCTTGTGAGG
TCTGAGGAGTCAATTCTTGTATCTTGGTTTATGTTCAAATGGAGAACGGA
GTTTAGACGAGCACCGGCTCTATACTGCTGTATATATTTCAGACCTGTGC
AATATATACAAGTAGACGCTTCGCTTGATTCACATATGGGTTACATATCA
TTGTTTCCCCGATAGACTAAGGACCTTCTTTGGTGCGCTCATGTTGATCA
AAACGGGAGTGTTACTGTGATCATGCAGGCTGCAACGTATGAAATCGATC
TGAGGTTTAGCGGAGCTGCAGCGGTGTAGGGCCACATCTAGAATATTTCT
CTCACCACCTTCAGGCATTGGCAGCGTGGGTCAACCCGCCCGTTCTCCTG
GCCTTATACCGAAGTACAACACGGACTTGACTTTCAGTAAAAAGCACACA
ATTATGTAGTGACTATAGTTCCTATACGTCTGTTGTTCGAGGGCTACGCT
AGTGGCGTGACGTGAACTCAATTCCGGTATTCGGTATTCAAGTATTCGGG
CTTACGATCCTTGGTTTTATTTCTGAGCTCCTCGCGTTGTAGGCGATACC
TGACTGCGTGACCAAAATGTTGAAAAAACTTGCGCCTTGCTCATTCAAAA
GCGCTCGTTTTTTCAATAGTTCGGTCGGAAAGGAGTGCGATGTTCCCACG
GCAGGACGGACGACTGGCTGCCTAAGAAGGCTTCGTTCTGGCTGTGATGT
TACCAGTCCGCGCACAGTGTTTAGACGCATGTATACTGCAGTTTTCGAAA
TCACATCGTTTTAAGACGGCAGTTTCATTGATAGGCGGTGGTATCCCGTA
TGATTAACGACCGAAAAATATGCGGTAACAGTGCGGCGGATGGACTGACC
AACTGTGGATCGTAAAACACACAAGCACGTCAAATGTTGAGAGCATTCTG
CCCCAAAAGCTGCATATTTTGGGGCAGAAGGAAAATCAACTACATGAGTC
GTAGTGAGGATCTTCAGAAAGAGCTCCACAGCGGACCGCGAAGGTATGAG
AAGAACCGCTTGCCTGTGGGTGTCCACACCGCCTCCCTCTTTGTGTGGTG
TTCATATTGTCACAACAAGAATTGTTGGTGACTGTACGAAGGTGGCAGGT
CGCCACTCAGTACGGCGGCCGCAGGCTGTCTCTGTACACAGGCTGTGGTG
CCATCATCCAGAAAAGTAACTTCGCGGCCAATCGGACAGGTCTCGGCACC
GTCTGAATATTTTACATGGAGCGCGTAGCACATTCCATAGAGGTGGTCTT
ATCAACGGTGTAGTACACAATCGATCACTTTGTGAGAAACTAGACATGTT
TTTTTTTGTAAAAGTAGGAAAAAATCCTTAGGTTAGAGTTGGAGTTTGAA
AACACCAGGCCCGAAGCAGTTCAAATGCTGCTGAAGGCTCCATCCAAACC
ACGTGCGAGCATGCAGAGCGTGCGGTATTGCAGGCCTGACGCCCAAACTC
TGGGATAGTGGTGCCAAGTACTGACAGCAGACCTCCTCCTAGTTTGAGCG
TTCGATCGCATGGCGTAGCGTAGTTATTTGAATATACCGCTGACATCGCG
GATTGTAACAGTAACCCAAAAAAGAGGTGTAGGAAAGCAGGACAAAAAGC
CGAATGTTTGCCCTATTTGCCACAACTTTTTCTCACGTAAGACGGACTTC
ATTTCGGGTGAAATTGCGTGGGCATTCCCGGCAGGTTGTGAGGTTTCACA
GAATATTGAAGTTGCTGAAGGGTCCTGAGATTTGATCGATTGGCCGCGTG
ATTGCTGGAATAATAGTTCTTGGTTATTTTGTTATTTTCGGCCAGTTTAG
CGAAAGTTGCTCCAGACAATGTGTCCGAATTGTACTGGATTTAGTATATT
TATGCTGCACGCTGTCCTCTGTACTGCCTGTAGTTTACTGACTGTACTGT
GAAGCATGTACTTCAATCTGCTTGTTTTGTTTTTACATTGTGCAGTACAA
GACGGAAGGAATGTAATTATTCAGTAGTTCGTATGCTGTCCTGTCTGTCC
TCTCTCTAACTGCAGTGTACGTCCGGTACCGTCTGCACTCTCCAGTAGTG
TGTAGTAGAGCATAGTAGAGTGCAGGTGGCATTGCTGTTGTAAGTTTGTT
TTTTTGTTTGTCGTATTCATTTGCAGAAGACGGGATAAATGGAGGTCTTT
TCCCGCTGTTTGTGTTGTTTTATCTTCCCTGCGTGTAGTTGTAGTGTAAC
TACCGTACCGTTTGCAGTAGTCTTTACTGTACTCCGCCCTACTGTATTGC
TGACTGTCGCCATGCAACTGATGTATATATACACCCCTATTTCATTTGTT
CACTAGGTCGCGGTGTGGGCATTTTACCCGCGGCTTCTTGAGTTTGGCGA
ATCTGAGGTAGCGGAGTTATTATTCATGGGAATTTGACAGTAGAGTCGAT
TCTACTGAAGGGGATATCGCATCATCTCATGATGCAGGGATGACAGCCGA
TTGGGTGCATGGATGGCAACCCGGGTGTCAAAAAGGGATGCTGACCTGAG
TATTCGGCTTCACGGCGATATTCTTCATCAGACTTTCCTGGTTGAACTTG
GGCCGAATTTCGACTTGGGGCAAAGTTGGTCATTTTTATCTAACTACTAA
GTCTAAGGTCAGAGCACACCAGTCATAGTATCGTATTACTGCAGTGGTAG
TGGGGCTCTATTGCAGTACCTTGAACGAAGAAGCTTGTGCCATCAGCGAA
AGAATAAGCCCCATGTGCGAAGTTTCCAGGAGCGAACGCGACGAAGCGAT
ACAAACTACATTTACCATCAAGTGGTGTGTTGTTTGGAGGAGGCGACACA
ATTAAGGAGTTTTGATAGTACATGTAGATGAACTGATTCGTTGTTTCGCC
GTCCAAGGAGCGAGGTCAAGAGAGGCTATAAACTGGAGATTTGGCTGTAC
ATTCACATACCATGATTTGCGATGTGGGTTGGGGGTGTTTTCTTTTTTTT
TCTTGAGGCGTCACAACGCACACATGCAGTCTGTGTTATGCCCTAAACAT
GAGCGACTGGAGCAAAGCGCTCGCCATCGGGTTCATGCTTTCAGCACCGC
GCAGAAAGCTGTGAGAGGGGATTTCGTGGACTGTTCTCCCGAGTCCGACA
TGGCAACCTCAGGGTGGAATCCAGCACAGATCTAAAAATATAAGCAGATA
GCAGCTGACCGCCCTGTTGAGTAGTACTACAGTATTGTCGTTCTCTACGA
TTTAAACTTATCGCAATCCGCGAAAAAAGTTAGATGAAATTTGCGGCGGG
TATTTCGGGTAACTAACCAAACAGTTCGTTGATTCCGCCGCAACAAAATA
CCTTGGTGAAACTGCCCTCTTGAAATTAGATCGCCAAGTAATATTCATGC
GCCCTTTATGCTGGAGAACCGCCGCGTCTATATGTGCAATCTCGTTTGCG
AAACATTCCAATTTTGCCCACCTTGGAGGTCTAATCGTGTAATGCCGGGT
TAGCGCAAAAACGATCTTGTAAAACAAAAAGGAGCAGGAGCGACGCCTGG
TAAAAAGCAGCCAGGTGCAGCGCCGTCATCGTACTTTCGGCTGGCTGCAC
CTGCTGGACCTCTACGTCCGCCATCGCAGGAGTACACATGAGGACAACGC
TTTTACCAAAAGCCTTGTGCTTACGGGATGTGCAAAAATACCCACCGAAT
AAATTGAAGCAGGAGGATCCGGTACAATTTGGCTGTCGTGTTTACGGTAG
GCACATAAAAACACAGGTGACGATTATACAAGGACACGGATAAACATCCT
AATGAGCAGACTGCATTTCTTTGAACTACTGTGTTAATTCGCATGCTGGT
GCTGTCTTAAACGCAGGCTTGAGTTTCGTGGGGATCTCAATGTCATGTGA
AGAGTTTGTTGTGTGAATCTCTCAGCGAGCAGGAGATGAAGATCCAGCCC
TTGGAATATCTTCATCTCTCCTGCCCATTTTCAGCCTGAGGTCAAAATCC
CTCGAGAGATCTTCTGTAATCCCTAACGTCTCGCCCGGTCCCGTTGTCAT
TGTAGGGCTGCGAGGCCAAGGATTTATGACTGTGACATTCGGTTTCATAT
GCACCCCCCCCCGCCCTCCGCTGTTTGGTTCTTCTCCCGTGACAGATCGT
GACGCTGAAGCCACGAACAAACCCTGTCGACATCACGCGTATCTTCCGCA
AGCTGGCTAGCAATATCCTTATGCAGGGAGGCATGGTGCGGGCGGTGACG
AACCACGGTGTGCGGGTGCTACCTTACCGCTTCCACAGCAAGTACATCGT
CTCGGAAACGGAGAGCCGTTGGTTCAGCTCGGGGCGCTGGGTCAGCGCAT
ACTTTGACGTGCATCCTGACGTGGCGAAGCGTTGTGAGGTGTGTTGATGC
TATGAGCCACTGTAGATTTTATTCTTGGAGAAAAATAAATAGGTCGTAGT
TGAAAAAAATTGGTGCGTGTTTGGTAGGATGAGCTTTGTAACTATCCCAA
TTGGGAAGCACACCTCGTAAGGACCAAAAACAATCGAGAATAATGACGAA
TATACTGGTATGCTTTAAATTTCGACACTTTACCAAGGATCATGCTAAAT
ATTCTTCAGCAGGCTGGTTTGCGCATGCCAGGTCCACAGGGGAAAACTTT
CTCTCTTTTTGCCGGTTTGGCCTTTTTCACGTGGACACTCACATGTCTTG
GTACATCAATGAATCTATTGAACGATAGTTCATTATGGATTACCACTTCC
AACTTCCTGCTATTTCTTTTACCCCGCCATCGCCATCGCCCGCACCGTTT
TGTGTCGCCGCTATCTCCTTTCTTATGGCCATATTCGTCGACTTCGTGTG
TCCGCAGGAACTACTGTTTGACGAGGATACGGTGTTGAGAGTAAGCACGC
TGCGGCCTCGCACCAAGATGGACGCAATGCGATCGACGCACCTCAAGTCT
AACCCATGGGAAATCGAACGGGCAAAGAGGCTTGGGATTCCGATAGACTC
CAAGTGTTACACGCCGGGACCGAACGCTAGCATTGGATCAAACACTCGTA
GGATAGGAAGCGCATAACTCTAGCGCGTGTGTTTTTGCTTGTCTGTTTCG
GCCAAGTACTTACCGTTAGGAATAGAGGGCACGATATTGGCGTGTGGCTT
GCCTCTGTTTCAATCTCCCAGAGCTACCACTGGCATATGGAAAGCATATT
CTAGCGTGTTCGTGTCTCTCACGTAGGCTATTATTATCTGTATAGGTTAT
TCGGGGTATTGGTGATGTCCCGTGATGCTGGGGTGCGGCCGAAAGTACGC
CTTTCTTTAGCTGAGATTATGTGACTCATATCCCACAGCTGGATCTACTC
ACCAGCGCCTAGTGAAAAATACGGCGGGGTTGAGGACACCGCTCGACTAA
CCACTTCGTGTTTTGCAACCAGCTGCGGCGCGGGGGCTTGATGGTACCAG
AGTGATGTACTCGTAGGGCCTGGCTGTAGTAGCACTGCGTATTTGTCGCA
TTCAGTGACCTGCGTCCATGTAACTTAACTTTTAATGTGCTCATTCAGGG
GTAACAGCGATGACCGGTTCCAGAGCAGTTATCCACCCTATGCATGAATC
TCATCACGTGTTTGTATGCCTCATGCAGTCAATGACTACTGCCGCGCACC
CTTGAACTCTGACACTTTATTATGCCTGAAATATGTATCGTTTTCTCAAC
AATCCGGGCACCGTTGTTCACTCCAGCAACGACAATCGTGATCTTACGCC
ACGCTGATGTAGAGGCTGCACAACTGCACAGGCTAACTCCCGCTATGACT
ATTTACCATCGGCCTCCACAGTCTCCAGATCTCAACATGAACGATTGGGG
ATTCTCCACATCCTTAGAAAGCAGTGTGTGGAGGGAGCGTTACAGTACGA
TAGACTTTCCTTGTAAAAGGGATTTAGGCAAATGTACGAGGAGGAGTATG
ATGCGTATACATTACGGGTCCGATGATCAGAAAGCCGTGTTTTGGGTGCC
CCTCAAAACCTTATTTTAGCGAGAATCATGAGCAGTGCTGTTTCTCACTT
CATATAGGAATTGGAATTAGTATGAGGCCACAATTTGAGCCCCATTTCTT
GACCCGGATTTCTCATGGTTTAGCAAAAATCGAGCCTCAAATTCTTGTTG
GTGGTCGTGTTGTATTGCAGAGCCTGTTCAATATCTAGAATCAAGTGTTG
AGAACTCTGGGGGGGAACGATTTCAGTGTTGAGCACACCGAGACGAGAAA
AAGGCAGCGTGACGGTGTGTTCTCGAGCACTTGGTCGCGATAGGCAGATA
TTCTCAGCGAGGCGCTGAATTAATGGAGAGGATGAGATATAATAATACTG
AATGTGGTGCAGGAGATTCCAAGGAATCCCACGCAAAAAAAATACTATTT
TTATCCAAGGTCTCGTCGAGACGATATCGCCGATTAACCATCATTTTTGG
CCGTTTTTGGTCGGTTTTGCTGTTTCTCATAAGGTTGCTATTTCGAATAA
GAACC back to topCoding sequence (CDS) from alignment at H-paniculata_contig4651:7812..14666+ >mRNA_H-paniculata_contig4651.11604.1 ID=mRNA_H-paniculata_contig4651.11604.1|Name=mRNA_H-paniculata_contig4651.11604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig4651:7812..14666+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCCTTTCTATCAGCAGATGCCTTTCTATCAGCAGATCGTGACGCTGAA GCCACGAACAAACCCTGTCGACATCACGCGTATCTTCCGCAAGCTGGCTA GCAATATCCTTATGCAGGGAGGCATGGTGCGGGCGGTGACGAACCACGGT GTGCGGGTGCTACCTTACCGCTTCCACAGCAAGTACATCGTCTCGGAAAC GGAGAGCCGTTGGTTCAGCTCGGGGCGCTGGGTCAGCGCATACTTTGACG TGCATCCTGACGTGGCGAAGCGTTGTGAGATCGTGACGCTGAAGCCACGA ACAAACCCTGTCGACATCACGCGTATCTTCCGCAAGCTGGCTAGCAATAT CCTTATGCAGGGAGGCATGGTGCGGGCGGTGACGAACCACGGTGTGCGGG TGCTACCTTACCGCTTCCACAGCAAGTACATCGTCTCGGAAACGGAGAGC CGTTGGTTCAGCTCGGGGCGCTGGGTCAGCGCATACTTTGACGTGCATCC TGACGTGGCGAAGCGTTGTGAGGAACTACTGTTTGACGAGGATACGGTGT TGAGAGTAAGCACGCTGCGGCCTCGCACCAAGATGGACGCAATGCGATCG ACGCACCTCAAGTCTAACCCATGGGAAATCGAACGGGCAAAGAGGCTTGG GATTCCGATAGACTCCAAGTGTTACACGCCGGGACCGAACGCTAGCATTG GATCAAACACTCGTAGGATAGGAAGCGCATAAGAACTACTGTTTGACGAG GATACGGTGTTGAGAGTAAGCACGCTGCGGCCTCGCACCAAGATGGACGC AATGCGATCGACGCACCTCAAGTCTAACCCATGGGAAATCGAACGGGCAA AGAGGCTTGGGATTCCGATAGACTCCAAGTGTTACACGCCGGGACCGAAC GCTAGCATTGGATCAAACACTCGTAGGATAGGAAGCGCATAA back to top
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