mRNA_H-paniculata_contig46496.11601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46496.11601.1
Unique NamemRNA_H-paniculata_contig46496.11601.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.050e-26
Identity = 57/138 (41.30%), Postives = 87/138 (63.04%), Query Frame = 1
Query:   19 NMKRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLR 429
            N+K I  YL+  PNL + Y +DS FEL  + DASY ++   K  S +GSM FL+G +++FSS +Q+  AQS+ E E  T++  AK G+Y S ++GELGW    + ++  D + AL L   G++  RS+H+ +R+  LR
Sbjct:  703 NIKSIFRYLRKRPNLSLVYRKDSRFELPCYSDASYASTKDYK--SVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALR 838          
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5I0U2_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I0U2_9HYME)

HSP 1 Score: 97.4 bits (241), Expect = 2.140e-22
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTA-QSTEAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
            K +L YLKG  N+K+ YSRD    L GF DA +G SD     S SG ++ LS G + + S  QK+ A  STEAE +++S  AK+ IYLSG++ ELG+ +  R  I+ DN+ A  LA    +  RSKH+DIR   +R+
Sbjct:   34 KHVLRYLKGTSNMKLVYSRDEK-GLKGFADADWG-SDITDRKSYSGYVFSLSNGAISWCSKKQKSVALSSTEAEYMSLSDAAKEAIYLSGLLTELGFTDLSRTIIYNDNQSAGKLATNPVFHARSKHIDIRAHFVRE 168          
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5IWB1_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IWB1_9HYME)

HSP 1 Score: 96.3 bits (238), Expect = 1.250e-21
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTA-QSTEAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
            KR+L YLKG   LK+TYSR S   L GF DA +G SD     S SG M+ LS   V + S  QK+ A  STEAE +++S  AK+ I+LS ++ ELG+ +  R+ ++ DN+ A  LA    +  RSKH+DIR   +R+
Sbjct:   71 KRVLRYLKGTSKLKLTYSR-SEEGLVGFADADWG-SDITDRRSYSGYMFSLSNSAVSWCSKKQKSVALSSTEAEYMSLSDAAKEAIFLSNLLKELGFDDLARMTVYNDNQSAAKLASNPVFHARSKHIDIRAHFIRE 205          
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.170e-21
Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
            K +L YL+G P+L I Y +   F L+ F D+S+G  +P    ST+G ++FL GG++ + +  Q   AQ+T EAEL  +S  A++ +Y+S  + E+G+K FR V I  D+  AL +A    +  R+KH+ +RF  LR+
Sbjct:  120 KHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 254          
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.680e-20
Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
            K +L YL+G P+L I Y +   F L+ F D+S+G  +P    ST+G ++FL GG++ + +  Q   AQ+T EAEL  +S  A++ +Y+S  + E+G+K FR V I  D+  AL +A    +  R+KH+ +RF  LR+
Sbjct:  557 KHLLRYLRGTPDLPIVYKK-GKFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 691          
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.720e-20
Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
            K +L YL+G P+L I Y +   F L+ F D+S+G  +P    ST+G ++FL GG++ + +  Q   AQ+T EAEL  +S  A++ +Y+S  + E+G+K FR V I  D+  AL +A    +  R+KH+ +RF  LR+
Sbjct:  716 KHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 850          
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.440e-20
Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
            K +L YL+G P+L I Y +   F L+ F D+S+G  +P    ST+G ++FL GG++ + +  Q   AQ+T EAEL  +S  A++ +Y+S  + E+G+K FR V I  D+  AL +A    +  R+KH+ +RF  LR+
Sbjct: 1336 KHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRN 1470          
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5K4K1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.030e-19
Identity = 50/137 (36.50%), Postives = 81/137 (59.12%), Query Frame = 1
Query:   25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
            K +L YL+G P+L I Y +   F L+ F D+S+G  +P    ST+G ++FL GG++ + +  Q   AQ+T EAEL  +S  A++ +Y+S  + E+G+K FR V I  D+  A        +  R+KH+ ++F  LR+
Sbjct:    5 KHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGACDCGQHAMFSSRTKHIALQFFFLRE 139          
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A4C1U966_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1U966_EUMVA)

HSP 1 Score: 94.0 bits (232), Expect = 1.190e-19
Identity = 53/138 (38.41%), Postives = 85/138 (61.59%), Query Frame = 1
Query:   22 MKRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
            +KRI  YL+G  +LK+TY++D +  +TG+CDA +  SD     S +G  + L GG + + S  Q+T A ST EAE + MS  A++ ++L  +  E+G +    + IF DN+ A+ L++   Y  RS+H+DIR+  L+D
Sbjct:  312 VKRIFRYLQGTKDLKLTYTKDGDENITGYCDADW-ASDVCDRKSCTGYTFLLQGGAISWRSHKQQTVALSTAEAEYMAMSSAAQEALWLQQLHAEVGQQQKNPLVIFSDNESAIKLSNNNCYLPRSRHIDIRYHFLKD 448          
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: UPI001785C054 (secreted RxLR effector protein 161-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001785C054)

HSP 1 Score: 91.3 bits (225), Expect = 1.340e-19
Identity = 49/138 (35.51%), Postives = 86/138 (62.32%), Query Frame = 1
Query:   22 MKRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTA-QSTEAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
            +KR+L YLKG  +LK+TY +DSN ++ G+CDA +  +  ++ S+T G ++ L GG + +++  Q T A  STEAE ++M    ++ ++L    GEL       +++ CDN+ A+ LA   +Y  R+KH+D++   +R+
Sbjct:   77 VKRVLRYLKGTIDLKLTYRKDSNDQMVGYCDADWAGNQDERRSNT-GYVFVLQGGAISWATRKQPTIALSSTEAEFMSMVAAIQEALWLKRFEGELFADATPSIQLNCDNQGAIKLATNNNYHARTKHIDVKNYFIRE 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV56_9PHAE2.050e-2641.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5I0U2_9HYME2.140e-2244.53Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5IWB1_9HYME1.250e-2144.53Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5KC04_9PHAE2.170e-2138.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE1.680e-2038.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S9_9PHAE1.720e-2038.69CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KHG5_9PHAE2.440e-2038.69Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5K4K1_9PHAE1.030e-1936.50Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A4C1U966_EUMVA1.190e-1938.41Retrovirus-related Pol polyprotein from transposon... [more]
UPI001785C0541.340e-1935.51secreted RxLR effector protein 161-like n=1 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46496contigH-paniculata_contig46496:30..464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score89.4
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog7425.NV17647-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size414
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930387.374548-UTR-H-paniculata_contig46496:29..501622930387.374548-UTR-H-paniculata_contig46496:29..50Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46496 30..50 +
1691481268.5314617-UTR-H-paniculata_contig46496:29..501691481268.5314617-UTR-H-paniculata_contig46496:29..50Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46496 30..50 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930387.3886688-CDS-H-paniculata_contig46496:50..4641622930387.3886688-CDS-H-paniculata_contig46496:50..464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46496 51..464 +
1691481268.5446997-CDS-H-paniculata_contig46496:50..4641691481268.5446997-CDS-H-paniculata_contig46496:50..464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46496 51..464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46496.11601.1prot_H-paniculata_contig46496.11601.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46496 51..464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46496.11601.1

>prot_H-paniculata_contig46496.11601.1 ID=prot_H-paniculata_contig46496.11601.1|Name=mRNA_H-paniculata_contig46496.11601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MKRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMY
FLSGGVVHFSSSLQKTTAQSTEAELITMSIYAKQGIYLSGIIGELGWKNF
RRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD*
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mRNA from alignment at H-paniculata_contig46496:30..464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46496.11601.1 ID=mRNA_H-paniculata_contig46496.11601.1|Name=mRNA_H-paniculata_contig46496.11601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig46496:30..464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCTGCGACCACAGTAAACATGAAGCGCATCTTGCATTACCTAAAAGG CGAGCCAAACCTAAAAATCACCTACAGTCGTGACTCCAACTTCGAGCTAA CCGGCTTCTGCGACGCCTCCTATGGCACTAGCGACCCCAAGAAAGCTAGT TCAACCTCAGGGAGTATGTATTTCCTCTCCGGTGGAGTTGTTCATTTCAG TTCGAGCCTTCAGAAAACTACGGCTCAGTCAACCGAGGCGGAACTAATCA CCATGAGTATCTACGCTAAACAAGGAATTTACCTATCTGGCATCATCGGA GAGCTTGGATGGAAGAACTTCCGTAGAGTCCGTATCTTCTGCGACAACAA GGAAGCACTACTTCTTGCCGACCAAGGCAGCTATGGAATCAGGTCCAAAC ACCTGGACATTCGTTTTGCTGGACTCCGCGATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig46496:30..464+

>mRNA_H-paniculata_contig46496.11601.1 ID=mRNA_H-paniculata_contig46496.11601.1|Name=mRNA_H-paniculata_contig46496.11601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig46496:30..464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCGCATCTTGCATTACCTAAAAGGCGAGCCAAACCTAAAAATCAC
CTACAGTCGTGACTCCAACTTCGAGCTAACCGGCTTCTGCGACGCCTCCT
ATGGCACTAGCGACCCCAAGAAAGCTAGTTCAACCTCAGGGAGTATGTAT
TTCCTCTCCGGTGGAGTTGTTCATTTCAGTTCGAGCCTTCAGAAAACTAC
GGCTCAGTCAACCGAGGCGGAACTAATCACCATGAGTATCTACGCTAAAC
AAGGAATTTACCTATCTGGCATCATCGGAGAGCTTGGATGGAAGAACTTC
CGTAGAGTCCGTATCTTCTGCGACAACAAGGAAGCACTACTTCTTGCCGA
CCAAGGCAGCTATGGAATCAGGTCCAAACACCTGGACATTCGTTTTGCTG
GACTCCGCGATTGAATGAAGCGCATCTTGCATTACCTAAAAGGCGAGCCA
AACCTAAAAATCACCTACAGTCGTGACTCCAACTTCGAGCTAACCGGCTT
CTGCGACGCCTCCTATGGCACTAGCGACCCCAAGAAAGCTAGTTCAACCT
CAGGGAGTATGTATTTCCTCTCCGGTGGAGTTGTTCATTTCAGTTCGAGC
CTTCAGAAAACTACGGCTCAGTCAACCGAGGCGGAACTAATCACCATGAG
TATCTACGCTAAACAAGGAATTTACCTATCTGGCATCATCGGAGAGCTTG
GATGGAAGAACTTCCGTAGAGTCCGTATCTTCTGCGACAACAAGGAAGCA
CTACTTCTTGCCGACCAAGGCAGCTATGGAATCAGGTCCAAACACCTGGA
CATTCGTTTTGCTGGACTCCGCGATTGA
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