mRNA_H-paniculata_contig46496.11601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 113 bits (283), Expect = 2.050e-26 Identity = 57/138 (41.30%), Postives = 87/138 (63.04%), Query Frame = 1
Query: 19 NMKRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLR 429
N+K I YL+ PNL + Y +DS FEL + DASY ++ K S +GSM FL+G +++FSS +Q+ AQS+ E E T++ AK G+Y S ++GELGW + ++ D + AL L G++ RS+H+ +R+ LR
Sbjct: 703 NIKSIFRYLRKRPNLSLVYRKDSRFELPCYSDASYASTKDYK--SVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALR 838
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5I0U2_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I0U2_9HYME) HSP 1 Score: 97.4 bits (241), Expect = 2.140e-22 Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTA-QSTEAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
K +L YLKG N+K+ YSRD L GF DA +G SD S SG ++ LS G + + S QK+ A STEAE +++S AK+ IYLSG++ ELG+ + R I+ DN+ A LA + RSKH+DIR +R+
Sbjct: 34 KHVLRYLKGTSNMKLVYSRDEK-GLKGFADADWG-SDITDRKSYSGYVFSLSNGAISWCSKKQKSVALSSTEAEYMSLSDAAKEAIYLSGLLTELGFTDLSRTIIYNDNQSAGKLATNPVFHARSKHIDIRAHFVRE 168
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5IWB1_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IWB1_9HYME) HSP 1 Score: 96.3 bits (238), Expect = 1.250e-21 Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTA-QSTEAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
KR+L YLKG LK+TYSR S L GF DA +G SD S SG M+ LS V + S QK+ A STEAE +++S AK+ I+LS ++ ELG+ + R+ ++ DN+ A LA + RSKH+DIR +R+
Sbjct: 71 KRVLRYLKGTSKLKLTYSR-SEEGLVGFADADWG-SDITDRRSYSGYMFSLSNSAVSWCSKKQKSVALSSTEAEYMSLSDAAKEAIFLSNLLKELGFDDLARMTVYNDNQSAAKLASNPVFHARSKHIDIRAHFIRE 205
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 2.170e-21 Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
K +L YL+G P+L I Y + F L+ F D+S+G +P ST+G ++FL GG++ + + Q AQ+T EAEL +S A++ +Y+S + E+G+K FR V I D+ AL +A + R+KH+ +RF LR+
Sbjct: 120 KHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 254
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.680e-20 Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
K +L YL+G P+L I Y + F L+ F D+S+G +P ST+G ++FL GG++ + + Q AQ+T EAEL +S A++ +Y+S + E+G+K FR V I D+ AL +A + R+KH+ +RF LR+
Sbjct: 557 KHLLRYLRGTPDLPIVYKK-GKFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 691
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.720e-20 Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
K +L YL+G P+L I Y + F L+ F D+S+G +P ST+G ++FL GG++ + + Q AQ+T EAEL +S A++ +Y+S + E+G+K FR V I D+ AL +A + R+KH+ +RF LR+
Sbjct: 716 KHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 850
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 2.440e-20 Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
K +L YL+G P+L I Y + F L+ F D+S+G +P ST+G ++FL GG++ + + Q AQ+T EAEL +S A++ +Y+S + E+G+K FR V I D+ AL +A + R+KH+ +RF LR+
Sbjct: 1336 KHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRN 1470
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A6H5K4K1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K1_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.030e-19 Identity = 50/137 (36.50%), Postives = 81/137 (59.12%), Query Frame = 1
Query: 25 KRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
K +L YL+G P+L I Y + F L+ F D+S+G +P ST+G ++FL GG++ + + Q AQ+T EAEL +S A++ +Y+S + E+G+K FR V I D+ A + R+KH+ ++F LR+
Sbjct: 5 KHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGACDCGQHAMFSSRTKHIALQFFFLRE 139
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: A0A4C1U966_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1U966_EUMVA) HSP 1 Score: 94.0 bits (232), Expect = 1.190e-19 Identity = 53/138 (38.41%), Postives = 85/138 (61.59%), Query Frame = 1
Query: 22 MKRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTAQST-EAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
+KRI YL+G +LK+TY++D + +TG+CDA + SD S +G + L GG + + S Q+T A ST EAE + MS A++ ++L + E+G + + IF DN+ A+ L++ Y RS+H+DIR+ L+D
Sbjct: 312 VKRIFRYLQGTKDLKLTYTKDGDENITGYCDADW-ASDVCDRKSCTGYTFLLQGGAISWRSHKQQTVALSTAEAEYMAMSSAAQEALWLQQLHAEVGQQQKNPLVIFSDNESAIKLSNNNCYLPRSRHIDIRYHFLKD 448
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Match: UPI001785C054 (secreted RxLR effector protein 161-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001785C054) HSP 1 Score: 91.3 bits (225), Expect = 1.340e-19 Identity = 49/138 (35.51%), Postives = 86/138 (62.32%), Query Frame = 1
Query: 22 MKRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYFLSGGVVHFSSSLQKTTA-QSTEAELITMSIYAKQGIYLSGIIGELGWKNFRRVRIFCDNKEALLLADQGSYGIRSKHLDIRFAGLRD 432
+KR+L YLKG +LK+TY +DSN ++ G+CDA + + ++ S+T G ++ L GG + +++ Q T A STEAE ++M ++ ++L GEL +++ CDN+ A+ LA +Y R+KH+D++ +R+
Sbjct: 77 VKRVLRYLKGTIDLKLTYRKDSNDQMVGYCDADWAGNQDERRSNT-GYVFVLQGGAISWATRKQPTIALSSTEAEFMSMVAAIQEALWLKRFEGELFADATPSIQLNCDNQGAIKLATNNNYHARTKHIDVKNYFIRE 213 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46496.11601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46496.11601.1 >prot_H-paniculata_contig46496.11601.1 ID=prot_H-paniculata_contig46496.11601.1|Name=mRNA_H-paniculata_contig46496.11601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp MKRILHYLKGEPNLKITYSRDSNFELTGFCDASYGTSDPKKASSTSGSMYback to top mRNA from alignment at H-paniculata_contig46496:30..464+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46496.11601.1 ID=mRNA_H-paniculata_contig46496.11601.1|Name=mRNA_H-paniculata_contig46496.11601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig46496:30..464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46496:30..464+ >mRNA_H-paniculata_contig46496.11601.1 ID=mRNA_H-paniculata_contig46496.11601.1|Name=mRNA_H-paniculata_contig46496.11601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig46496:30..464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |