mRNA_H-paniculata_contig46490.11600.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46490.11600.1
Unique NamemRNA_H-paniculata_contig46490.11600.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: D7FU50_ECTSI (CBF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU50_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.660e-28
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            F L QAHDLDYPDFYDSLYRLVT  MMYAKYRARFFRMVDLCL+SSHVPAYVVAAFLK+FAR
Sbjct:  558 FLLMQAHDLDYPDFYDSLYRLVTSDMMYAKYRARFFRMVDLCLTSSHVPAYVVAAFLKRFAR 619
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: H3CE75_TETNG (Nucleolar complex associated 4 homolog n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CE75_TETNG)

HSP 1 Score: 87.0 bits (214), Expect = 2.150e-18
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            F L   H+LDYPDFY  LY L+ PT+ + KYRARFF + DL LSSSH+PAY+VAAF+K+FAR
Sbjct:  302 FVLIHEHNLDYPDFYRKLYALLEPTIFHVKYRARFFHLADLFLSSSHLPAYLVAAFVKRFAR 363
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: A0A4P9Y007_9FUNG (Nucleolar complex protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y007_9FUNG)

HSP 1 Score: 83.6 bits (205), Expect = 5.030e-18
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            FTL Q H+L+YPDFY  LY L    +++ +YRARFFR+VDL LSSSH+PAY+VAAF+K+ +R
Sbjct:   58 FTLMQDHNLEYPDFYSKLYALFDRHLLHVRYRARFFRLVDLFLSSSHLPAYLVAAFIKRLSR 119
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: A0A7K4S813_COLPI (NOC4L protein (Fragment) n=1 Tax=Columbina picui TaxID=115618 RepID=A0A7K4S813_COLPI)

HSP 1 Score: 82.0 bits (201), Expect = 6.810e-18
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            F L   H+L+YPDFY  LY L+ P++ + KYRARFF ++DL LSSSH+PAY+VAAFLK+ +R
Sbjct:   13 FVLIHQHNLEYPDFYKKLYSLLDPSVYHVKYRARFFHLLDLFLSSSHLPAYLVAAFLKRLSR 74
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: A0A7S2GHA6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHA6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.070e-18
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            F L Q H+LDYPDFY SLYR + P++ +AK+RARFFR++ LCLSS+ +PAY++ AF+KK  R
Sbjct:    7 FILMQCHNLDYPDFYGSLYRALKPSVFHAKHRARFFRLLALCLSSTALPAYLICAFVKKLNR 68
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: A0A2D4G0I8_MICCO (CBF domain-containing protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4G0I8_MICCO)

HSP 1 Score: 81.6 bits (200), Expect = 1.370e-17
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            F L   H+L+YPDFY  LY L+ P++ + KYRARFFR++DL LSSSH+PAY+VAAF K+ +R
Sbjct:   92 FVLILQHNLEYPDFYTKLYSLLDPSIFHVKYRARFFRLLDLFLSSSHLPAYLVAAFAKRLSR 153
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: A0A851DUC7_TODME (NOC4L protein (Fragment) n=1 Tax=Todus mexicanus TaxID=135184 RepID=A0A851DUC7_TODME)

HSP 1 Score: 80.5 bits (197), Expect = 2.530e-17
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            F L   H+L+YPDFY  LY L+ P++ + KYRARFF + DL LSSSH+PAY+VAAF+K+ +R
Sbjct:   51 FILIHQHNLEYPDFYKKLYSLLDPSIYHVKYRARFFHLTDLFLSSSHLPAYLVAAFIKRLSR 112
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: A0A671NUS4_9TELE (Nucleolar complex associated 4 homolog n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671NUS4_9TELE)

HSP 1 Score: 83.2 bits (204), Expect = 3.130e-17
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            F L   H+LDYPDFY  LY L+ P++ + KYRARFF +V++ LSS+H+PAY+VAAF+K+FAR
Sbjct:  180 FILIHKHNLDYPDFYKKLYSLLDPSIFHVKYRARFFHLVNIFLSSTHLPAYLVAAFVKRFAR 241
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: UPI0007AC5411 (nucleolar complex protein 4 homolog n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AC5411)

HSP 1 Score: 83.2 bits (204), Expect = 3.420e-17
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            F L   H+LDYPDFY  LY L+ P++ + KYRARFF +V++ LSS+H+PAY+VAAF+K+FAR
Sbjct:  177 FILIHKHNLDYPDFYKKLYSLLDPSIFHVKYRARFFHLVNIFLSSTHLPAYLVAAFVKRFAR 238
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BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Match: A0A7K4P9K8_MELMO (NOC4L protein (Fragment) n=27 Tax=Neognathae TaxID=8825 RepID=A0A7K4P9K8_MELMO)

HSP 1 Score: 81.6 bits (200), Expect = 3.490e-17
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPAYVVAAFLKKFAR 186
            F L   H+L+YPDFY  LY L+ P++ + KYRARFF + DL LSSSH+PAY+VAAF+K+ AR
Sbjct:   51 FILIHQHNLEYPDFYKKLYSLLDPSIYHVKYRARFFHLTDLFLSSSHLPAYLVAAFIKRLAR 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46490.11600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU50_ECTSI1.660e-2890.32CBF domain-containing protein n=2 Tax=Ectocarpus T... [more]
H3CE75_TETNG2.150e-1864.52Nucleolar complex associated 4 homolog n=2 Tax=Tet... [more]
A0A4P9Y007_9FUNG5.030e-1861.29Nucleolar complex protein (Fragment) n=1 Tax=Pipto... [more]
A0A7K4S813_COLPI6.810e-1859.68NOC4L protein (Fragment) n=1 Tax=Columbina picui T... [more]
A0A7S2GHA6_9STRA7.070e-1859.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2D4G0I8_MICCO1.370e-1759.68CBF domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A851DUC7_TODME2.530e-1758.06NOC4L protein (Fragment) n=1 Tax=Todus mexicanus T... [more]
A0A671NUS4_9TELE3.130e-1759.68Nucleolar complex associated 4 homolog n=1 Tax=Sin... [more]
UPI0007AC54113.420e-1759.68nucleolar complex protein 4 homolog n=1 Tax=Sinocy... [more]
A0A7K4P9K8_MELMO3.490e-1759.68NOC4L protein (Fragment) n=27 Tax=Neognathae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46490contigH-paniculata_contig46490:1149..1358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D7FU50
Preferred nameNOC4L
KEGG koko:K12767,ko:K14771
KEGG Pathwayko04113,ko04138,ko04213,map04113,map04138,map04213
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140110,GO:1901360,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG2154@1,KOG2154@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930387.3290062-CDS-H-paniculata_contig46490:1148..13581622930387.3290062-CDS-H-paniculata_contig46490:1148..1358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46490 1149..1358 -
1691481268.5173848-CDS-H-paniculata_contig46490:1148..13581691481268.5173848-CDS-H-paniculata_contig46490:1148..1358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46490 1149..1358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46490.11600.1prot_H-paniculata_contig46490.11600.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46490 1149..1358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46490.11600.1

>prot_H-paniculata_contig46490.11600.1 ID=prot_H-paniculata_contig46490.11600.1|Name=mRNA_H-paniculata_contig46490.11600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
FTLGQAHDLDYPDFYDSLYRLVTPTMMYAKYRARFFRMVDLCLSSSHVPA
YVVAAFLKKFARCVYFILF*
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mRNA from alignment at H-paniculata_contig46490:1149..1358-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46490.11600.1 ID=mRNA_H-paniculata_contig46490.11600.1|Name=mRNA_H-paniculata_contig46490.11600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig46490:1149..1358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTACGTTGGGACAGGCTCATGACCTGGACTACCCGGACTTTTATGATTC
GTTGTACCGATTGGTGACGCCTACCATGATGTACGCGAAGTACAGAGCTC
GGTTCTTTCGGATGGTGGACTTGTGCCTGTCGTCTTCTCACGTACCGGCG
TACGTGGTGGCGGCCTTCCTCAAGAAGTTCGCAAGGTGTGTTTATTTTAT
TCTCTTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig46490:1149..1358-

>mRNA_H-paniculata_contig46490.11600.1 ID=mRNA_H-paniculata_contig46490.11600.1|Name=mRNA_H-paniculata_contig46490.11600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig46490:1149..1358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTACGTTGGGACAGGCTCATGACCTGGACTACCCGGACTTTTATGATTC
GTTGTACCGATTGGTGACGCCTACCATGATGTACGCGAAGTACAGAGCTC
GGTTCTTTCGGATGGTGGACTTGTGCCTGTCGTCTTCTCACGTACCGGCG
TACGTGGTGGCGGCCTTCCTCAAGAAGTTCGCAAGGTGTGTTTATTTTAT
TCTCTTTTGATTTACGTTGGGACAGGCTCATGACCTGGACTACCCGGACT
TTTATGATTCGTTGTACCGATTGGTGACGCCTACCATGATGTACGCGAAG
TACAGAGCTCGGTTCTTTCGGATGGTGGACTTGTGCCTGTCGTCTTCTCA
CGTACCGGCGTACGTGGTGGCGGCCTTCCTCAAGAAGTTCGCAAGGTGTG
TTTATTTTATTCTCTTTTGA
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