mRNA_H-paniculata_contig46488.11598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: UPI00109F3D5B (uncharacterized protein LOC110093484 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F3D5B) HSP 1 Score: 62.0 bits (149), Expect = 3.300e-7 Identity = 58/270 (21.48%), Postives = 112/270 (41.48%), Query Frame = 1
Query: 7 LKIVHSTEAPSEAWRKITKHYRASGFKERSRLLREFNSLRMEPGEESAKFLLRVDQVANDLERLGRTVDEHDRNLAIVNGLSPEYDIERIMIESSDDTPNRARIELIIANQYNRLQQQ--KGETGAKALTITMKGTAETCQLCHKLGHTA------PQCKGGRRASSNIKKRFDGVCWVCGSSEHIAR----RCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVL 780
L V + + EAW + + + S +L E ++++M+ ++L ++ + +++ G VD D L I+NGL Y+ + I +S + + ++ N+ L Q+ K +T + + + T PQ +S NI+ +C +CG H+A RC ++ T+ + T P + + W DTGA+ H+T D + + + +ANG+ VP++ G +L
Sbjct: 108 LPYVITATSAYEAWTTLERRLQPSSRSRVMQLKNELHNIQMK-NLTMQQYLSQIKNIVDNIAASGSKVDPEDIILHILNGLPATYNSFKTSIRTSPVPSDLDNLYALLCNEEIHLNQEIAKEQTTSSPALYAAPNNPPRNRNSKRFIKTKSNSSSIPQTTSNTSSSGNIRP----ICQICGKIGHVALNCWYRCDLKYAPTSVSNPRAMLTT--PTSYPTQDWILDTGASSHLTPDNSNLQTSSAYHGQDSISVANGSSVPIQHSGHGLL 370
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A2I0WJQ1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJQ1_9ASPA) HSP 1 Score: 60.5 bits (145), Expect = 1.060e-6 Identity = 62/270 (22.96%), Postives = 106/270 (39.26%), Query Frame = 1
Query: 7 LKIVHSTEAPSEAWRKITKHYRASGFKERSRLLREFNSLRMEPGEESAKFLLRVDQVANDLERLGRTVDEHDRNLAIVNGLSPEYDIERIMIESS------DDTPNRARIELI-IANQYNR---LQQQKGETGAKALTITMKGTAETCQLCH-KLGHTAPQCKGGRRASSNIKKRFDGV-CWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVL 780
L V S +E W + + ++S +L EF+ L M+ + ++LL V + L G + D ++GL P Y + I ++ DD E I +A++ R Q G + A + T H + ++ P ++ + + C +CG H A +C RH D A P T+ W D+GA+ H+TSD+T F+ P + + NG +P+ G+ +L
Sbjct: 118 LPYVLSVATCTEIWTVLDRRLQSSTRSRIIQLKHEFHYLSMKD-KSMTQYLLEVKNKVDSLAAAGAPLAVEDVIHYTLDGLPPAYQAFKTSIRTNLQPLSLDDLYTLLCSEEINLAHETTRELHSLQISGNSAAFSATRGXXXXXXXXXXXHGRNSYSNPSQPNKSTSNRGVNTSKPPINCQICGKYGHSAIKCWHRHDDQYNADPPNTAFFSSPSPHTSSEWYLDSGASTHLTSDQTQFQSSQPYTGSSQVILGNGNQLPIHNTGKGIL 386
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: UPI000DC692B6 (uncharacterized protein LOC105247889 n=1 Tax=Camponotus floridanus TaxID=104421 RepID=UPI000DC692B6) HSP 1 Score: 57.4 bits (137), Expect = 2.410e-6 Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 1
Query: 397 MKGTAETCQLCHKLGHTAPQCKGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHH 567
+KG C C K+GH APQCK +KK C++CGS+EH+AR CPKR H
Sbjct: 154 IKGKPTKCYKCLKIGHIAPQCK-----RVPMKK----TCYMCGSTEHLARECPKRGH 201
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: UPI002010774D (uncharacterized protein LOC125228091 n=2 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI002010774D) HSP 1 Score: 58.5 bits (140), Expect = 3.030e-6 Identity = 57/258 (22.09%), Postives = 104/258 (40.31%), Query Frame = 1
Query: 16 VHSTEAPSEAWRKITKHYRASGFKERSRLLREFNSLRMEPGEESAKFLLRVDQVANDLERLGRTVDEHDRNLAIVNGLSPEYD--IERIMIESSDDTPNRARIELIIANQYNRLQQQKGETGAKALTITMKGTAETCQLCHKLGHTAPQC---KGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRL 774
V + P++AW K+ + G R LLR+ + ++ A ++ + + LE +GRT+++ + +++GL EYD + + + T I+ + +++R K + A +T K TC C + GHT +C K +R SSN D A +A R P+ E + D+GAT+ M +++ D P + +A+ + E G+L
Sbjct: 77 VRNCTTPADAWSKLKDAFEDKGLYRRVLLLRKLHRIQFSEHSSMASYIDSIITIVQQLEDIGRTIEDAEVAEILLSGLPAEYDTVVSSLSTAAVGQTVKSEVIKSRLLQEFSR----KSSIESTAAFVTKKQV--TCDFCKRQGHTKARCFKLKSKKRKSSNPNM------------------------DRTNMVAAFMA--RTPQ----ENFYLDSGATNSMVNNKNLLSDTLPCQSNVI--VADNNKISCEAIGKL 296
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A2N9FT70_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FT70_FAGSY) HSP 1 Score: 57.8 bits (138), Expect = 8.000e-6 Identity = 40/125 (32.00%), Postives = 47/125 (37.60%), Query Frame = 1
Query: 415 TCQLCHKLGHTAPQCKGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVLRVS 789
TCQ+CHKLGHTA C + F G RH A+A A P T W SDTGATDH T D D + + NG +P+ G LR S
Sbjct: 261 TCQICHKLGHTAIDCY------QRMNYAFQG-----------------RHPPAKLAAMATAA----PPDSTPTTWISDTGATDHFTPDLHNIPDNHAYTDSQLVSVGNGNQLPISHIGNSQLRTS 358
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A2N9J0P4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J0P4_FAGSY) HSP 1 Score: 55.1 bits (131), Expect = 6.510e-5 Identity = 40/132 (30.30%), Postives = 50/132 (37.88%), Query Frame = 1
Query: 394 TMKGTAETCQLCHKLGHTAPQCKGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVLRVS 789
T +G+ TCQ+CHKLGHTA C + F G H + A AT P+ W SDTGATDH T D D + + NG +P+ G LR S
Sbjct: 469 TNQGSRPTCQICHKLGHTAIDCY------QRMNYAFQG------------------RHPLAKLAAMATATPTPPEPHQTT-WISDTGATDHFTPDIHNLPDNQAYTDPQLVSVGNGHQLPITHIGNSQLRTS 575
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A284S1T9_ARMOS (Integrase catalytic domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S1T9_ARMOS) HSP 1 Score: 54.7 bits (130), Expect = 7.080e-5 Identity = 39/150 (26.00%), Postives = 65/150 (43.33%), Query Frame = 1
Query: 361 KGETGAKALTITMKGTAETCQLCHKLGHTAPQCKGGRRASSNIKKRFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIR---------GPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVLR 783
K T + +T GT TC C + GH+ +C+ + + ++R ++E +A + +R T + A A I+ P + WN+DTGA+ HMT F Y+P + +A+ T + EG G +VL
Sbjct: 221 KATTSPSSANLTSAGTKSTCGWCLREGHSEDECETKKFSLKRDQER---------AAERMASK--RRQKGTGKREAANSADIKEETASQASTDPSSPAMSHWNTDTGASRHMTPHRHWFNVYSPHI--VPIRLADNTVIYSEGIGTVVLE 357
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Match: A0A2I0W497_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W497_9ASPA) HSP 1 Score: 54.7 bits (130), Expect = 7.910e-5 Identity = 49/238 (20.59%), Postives = 100/238 (42.02%), Query Frame = 1
Query: 91 RSRLLREFNSLR-MEPGEES-AKFLLRVDQVANDLERLGRTVDEHDRNLAIVNGLSPEYDIERIMIESSDDTPNRARIELIIANQYNRLQQQKGETGAKALTITMKGTAETCQLCHKLG-HTAPQCKGGRRASSNIKK-----RFDGVCWVCGSSEHIARRCPKRHHDTNEGAVALLATIRGPKAMTAERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGCGRLVL 780
RSR+++ N L + G++S ++LL + + ++ +G T+D D L +NGL Y + I ++ + + ++ ++ +L Q+ + + IT A +G + + GRR S+ + + C +C + H A C + A P + W D+GA+ H+T+D++ P + + NG +P++ G+ +L
Sbjct: 139 RSRIIQLKNDLHHLSKGDKSMTQYLLEIKSKVDAIQEMGHTIDPEDVILYTLNGLPSSYQSFKTAIRTNLQPLSLDDLYSLLCSE-EQLLLQEATKDLQTMQITDNSVAFAASRGRAIGRNNTYRGNRGRRQSTPTGRGDKNPHINTTCQICSKTGHSAICCWYHNDPAYSDNSNTSALFSAPDNNRSTDWFLDSGASSHLTTDQSQLSVTEPYYGNSQVILGNGQSLPIQNTGKGLL 375 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46488.11598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46488.11598.1 >prot_H-paniculata_contig46488.11598.1 ID=prot_H-paniculata_contig46488.11598.1|Name=mRNA_H-paniculata_contig46488.11598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp MALKIVHSTEAPSEAWRKITKHYRASGFKERSRLLREFNSLRMEPGEESAback to top mRNA from alignment at H-paniculata_contig46488:33..968+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46488.11598.1 ID=mRNA_H-paniculata_contig46488.11598.1|Name=mRNA_H-paniculata_contig46488.11598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at H-paniculata_contig46488:33..968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46488:33..968+ >mRNA_H-paniculata_contig46488.11598.1 ID=mRNA_H-paniculata_contig46488.11598.1|Name=mRNA_H-paniculata_contig46488.11598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig46488:33..968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |