mRNA_H-paniculata_contig46484.11597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46484.11597.1
Unique NamemRNA_H-paniculata_contig46484.11597.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46484.11597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46484contigH-paniculata_contig46484:557..1027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size471
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930387.0719132-CDS-H-paniculata_contig46484:556..10271622930387.0719132-CDS-H-paniculata_contig46484:556..1027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46484 557..1027 +
1691481268.405788-CDS-H-paniculata_contig46484:556..10271691481268.405788-CDS-H-paniculata_contig46484:556..1027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46484 557..1027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46484.11597.1prot_H-paniculata_contig46484.11597.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46484 557..1027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46484.11597.1

>prot_H-paniculata_contig46484.11597.1 ID=prot_H-paniculata_contig46484.11597.1|Name=mRNA_H-paniculata_contig46484.11597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MVGQDQRISSDRARGASPDGESQGVLGRRNVEGNFASAMPATMMGHFKPE
TPSFSGNWENFAQFEIEMINFAKMHGCEETFVRDVFVPVGDTEKSLETLV
AEGYSKRGVESHSWAWQLLCSVLRGDDLKQIMGATSPRQVWVRLHEWYMP
QTQGGVG
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mRNA from alignment at H-paniculata_contig46484:557..1027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46484.11597.1 ID=mRNA_H-paniculata_contig46484.11597.1|Name=mRNA_H-paniculata_contig46484.11597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig46484:557..1027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGGGCAAGATCAGCGCATCAGCAGTGACAGGGCTAGGGGTGCAAG
CCCCGACGGTGAGTCACAGGGTGTGTTAGGTCGAAGGAATGTAGAAGGCA
ACTTCGCGTCGGCAATGCCTGCCACAATGATGGGACATTTTAAACCAGAG
ACCCCATCCTTTTCTGGTAACTGGGAAAATTTTGCCCAGTTCGAGATCGA
AATGATTAACTTCGCCAAGATGCATGGGTGTGAAGAAACTTTCGTGAGAG
ATGTGTTCGTGCCAGTGGGTGACACGGAAAAATCGCTGGAAACTTTAGTG
GCTGAAGGTTACAGCAAAAGGGGAGTGGAAAGCCACAGTTGGGCATGGCA
GCTTTTATGTTCTGTGTTGAGAGGAGATGACTTGAAGCAAATAATGGGAG
CCACGTCACCTCGGCAGGTCTGGGTTCGCCTGCATGAGTGGTACATGCCC
CAAACTCAGGGCGGAGTCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig46484:557..1027+

>mRNA_H-paniculata_contig46484.11597.1 ID=mRNA_H-paniculata_contig46484.11597.1|Name=mRNA_H-paniculata_contig46484.11597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig46484:557..1027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGGGCAAGATCAGCGCATCAGCAGTGACAGGGCTAGGGGTGCAAG
CCCCGACGGTGAGTCACAGGGTGTGTTAGGTCGAAGGAATGTAGAAGGCA
ACTTCGCGTCGGCAATGCCTGCCACAATGATGGGACATTTTAAACCAGAG
ACCCCATCCTTTTCTGGTAACTGGGAAAATTTTGCCCAGTTCGAGATCGA
AATGATTAACTTCGCCAAGATGCATGGGTGTGAAGAAACTTTCGTGAGAG
ATGTGTTCGTGCCAGTGGGTGACACGGAAAAATCGCTGGAAACTTTAGTG
GCTGAAGGTTACAGCAAAAGGGGAGTGGAAAGCCACAGTTGGGCATGGCA
GCTTTTATGTTCTGTGTTGAGAGGAGATGACTTGAAGCAAATAATGGGAG
CCACGTCACCTCGGCAGGTCTGGGTTCGCCTGCATGAGTGGTACATGCCC
CAAACTCAGGGCGGAGTCGGTATGGTTGGGCAAGATCAGCGCATCAGCAG
TGACAGGGCTAGGGGTGCAAGCCCCGACGGTGAGTCACAGGGTGTGTTAG
GTCGAAGGAATGTAGAAGGCAACTTCGCGTCGGCAATGCCTGCCACAATG
ATGGGACATTTTAAACCAGAGACCCCATCCTTTTCTGGTAACTGGGAAAA
TTTTGCCCAGTTCGAGATCGAAATGATTAACTTCGCCAAGATGCATGGGT
GTGAAGAAACTTTCGTGAGAGATGTGTTCGTGCCAGTGGGTGACACGGAA
AAATCGCTGGAAACTTTAGTGGCTGAAGGTTACAGCAAAAGGGGAGTGGA
AAGCCACAGTTGGGCATGGCAGCTTTTATGTTCTGTGTTGAGAGGAGATG
ACTTGAAGCAAATAATGGGAGCCACGTCACCTCGGCAGGTCTGGGTTCGC
CTGCATGAGTGGTACATGCCCCAAACTCAGGGCGGAGTCGGT
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