mRNA_H-paniculata_contig4646.11593.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4646.11593.1
Unique NamemRNA_H-paniculata_contig4646.11593.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 251 bits (642), Expect = 3.690e-84
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:   10 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    6 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 251 bits (641), Expect = 4.280e-84
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.970e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: A0A3Q3G4G3_KRYMA (Histone H3 n=4 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q3G4G3_KRYMA)

HSP 1 Score: 249 bits (636), Expect = 3.030e-83
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:    7 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    5 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 142
[Close]
BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: UPI001C0866E4 (histone H3-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C0866E4)

HSP 1 Score: 249 bits (635), Expect = 4.920e-83
Identity = 133/139 (95.68%), Postives = 137/139 (98.56%), Query Frame = 1 
Query:    4 FVTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            +V MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    8 YVAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 146
[Close]
BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: A0A1I7S5W3_BURXY (Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7S5W3_BURXY)

HSP 1 Score: 249 bits (636), Expect = 7.520e-83
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 1 
Query:    1 SFVTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            S  TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   30 SSATMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 169
[Close]
BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: A0A2L2YR31_PARTP (Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A2L2YR31_PARTP)

HSP 1 Score: 248 bits (633), Expect = 7.860e-83
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 1 
Query:    4 FVTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            F  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 FFAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
[Close]
BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: A0A3B5KKG2_TAKRU (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=A0A3B5KKG2_TAKRU)

HSP 1 Score: 248 bits (633), Expect = 7.860e-83
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:    7 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            +TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 LTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
[Close]
BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: A0A224XSI9_9HEMI (Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340 RepID=A0A224XSI9_9HEMI)

HSP 1 Score: 248 bits (632), Expect = 1.080e-82
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:    7 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
             TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 TTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
[Close]
BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Match: A0A164U858_9CRUS (Histone H3.3 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164U858_9CRUS)

HSP 1 Score: 248 bits (634), Expect = 1.080e-82
Identity = 133/139 (95.68%), Postives = 137/139 (98.56%), Query Frame = 1 
Query:    4 FVTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            F+ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   21 FLKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4646.11593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK3.690e-8499.27Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA4.280e-84100.00Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A7S1BJN3_9STRA1.970e-8399.26Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A3Q3G4G3_KRYMA3.030e-8397.10Histone H3 n=4 Tax=Clupeocephala TaxID=186625 RepI... [more]
UPI001C0866E44.920e-8395.68histone H3-like n=1 Tax=Alosa sapidissima TaxID=34... [more]
A0A1I7S5W3_BURXY7.520e-8396.43Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxI... [more]
A0A2L2YR31_PARTP7.860e-8395.68Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=3321... [more]
A0A3B5KKG2_TAKRU7.860e-8396.38Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A224XSI9_9HEMI1.080e-8296.38Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340... [more]
A0A164U858_9CRUS1.080e-8295.68Histone H3.3 n=1 Tax=Daphnia magna TaxID=35525 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4646contigH-paniculata_contig4646:9951..10373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.9
Seed ortholog evalue5.3e-66
Seed eggNOG ortholog112098.XP_008614757.1
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size423
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930386.6513116-CDS-H-paniculata_contig4646:9950..103611622930386.6513116-CDS-H-paniculata_contig4646:9950..10361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4646 9951..10361 -
1691481268.2499394-CDS-H-paniculata_contig4646:9950..103611691481268.2499394-CDS-H-paniculata_contig4646:9950..10361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4646 9951..10361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930386.6782935-UTR-H-paniculata_contig4646:10361..103731622930386.6782935-UTR-H-paniculata_contig4646:10361..10373Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4646 10362..10373 -
1691481268.2672524-UTR-H-paniculata_contig4646:10361..103731691481268.2672524-UTR-H-paniculata_contig4646:10361..10373Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4646 10362..10373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4646.11593.1prot_H-paniculata_contig4646.11593.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4646 9951..10361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4646.11593.1

>prot_H-paniculata_contig4646.11593.1 ID=prot_H-paniculata_contig4646.11593.1|Name=mRNA_H-paniculata_contig4646.11593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-paniculata_contig4646:9951..10373-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4646.11593.1 ID=mRNA_H-paniculata_contig4646.11593.1|Name=mRNA_H-paniculata_contig4646.11593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at H-paniculata_contig4646:9951..10373- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTCGTCACCATGGCTCGCACCAAGCAGACCGCCCGTAAGTCTACCGG
AGGCAAGGCTCCTCGCAAGCAGTTGGCCACCAAGGCCGCACGTAAGTCTG
CCCCTGCTACCGGTGGCGTGAAGAAGCCCCACCGATACAGGCCCGGGACG
GTGGCCCTGCGTGAGATTAGGCGCTACCAAAAGTCGACTGAATTGCTGAT
CCGCAAGCTTCCTTTCCAGCGCCTTGTGCGCGAGATCGCTCAGGACTTCA
AGACTGACCTTCGTTTCCAGGGTTCCGCTGTGCTCGCTCTGCAGGAAGCC
GCTGAGGCATACCTGGTGGGTCTATTCGAGGACACGAACTTGTGCGCTAT
CCACGCCAAGCGTGTGACAATCATGCCCAAGGACATCCAGTTGGCCAGGC
GTATCCGTGGCGAGCGCTCTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4646:9951..10373-

>mRNA_H-paniculata_contig4646.11593.1 ID=mRNA_H-paniculata_contig4646.11593.1|Name=mRNA_H-paniculata_contig4646.11593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig4646:9951..10373- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCGCACCAAGCAGACCGCCCGTAAGTCTACCGGAGGCAAGGCTCC
TCGCAAGCAGTTGGCCACCAAGGCCGCACGTAAGTCTGCCCCTGCTACCG
GTGGCGTGAAGAAGCCCCACCGATACAGGCCCGGGACGGTGGCCCTGCGT
GAGATTAGGCGCTACCAAAAGTCGACTGAATTGCTGATCCGCAAGCTTCC
TTTCCAGCGCCTTGTGCGCGAGATCGCTCAGGACTTCAAGACTGACCTTC
GTTTCCAGGGTTCCGCTGTGCTCGCTCTGCAGGAAGCCGCTGAGGCATAC
CTGGTGGGTCTATTCGAGGACACGAACTTGTGCGCTATCCACGCCAAGCG
TGTGACAATCATGCCCAAGGACATCCAGTTGGCCAGGCGTATCCGTGGCG
AGCGCTCTTAGATGGCTCGCACCAAGCAGACCGCCCGTAAGTCTACCGGA
GGCAAGGCTCCTCGCAAGCAGTTGGCCACCAAGGCCGCACGTAAGTCTGC
CCCTGCTACCGGTGGCGTGAAGAAGCCCCACCGATACAGGCCCGGGACGG
TGGCCCTGCGTGAGATTAGGCGCTACCAAAAGTCGACTGAATTGCTGATC
CGCAAGCTTCCTTTCCAGCGCCTTGTGCGCGAGATCGCTCAGGACTTCAA
GACTGACCTTCGTTTCCAGGGTTCCGCTGTGCTCGCTCTGCAGGAAGCCG
CTGAGGCATACCTGGTGGGTCTATTCGAGGACACGAACTTGTGCGCTATC
CACGCCAAGCGTGTGACAATCATGCCCAAGGACATCCAGTTGGCCAGGCG
TATCCGTGGCGAGCGCTCTTAG
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