mRNA_H-paniculata_contig11811.1159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig11811.1159.1
Unique Name	mRNA_H-paniculata_contig11811.1159.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.020e-63
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 196 bits (499), Expect = 1.450e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.070e-63
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: B7FX68_PHATC (Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FX68_PHATC)

HSP 1 Score: 196 bits (497), Expect = 2.940e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 103

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BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: C1MUM2_MICPC (Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1MUM2_MICPC)

HSP 1 Score: 196 bits (497), Expect = 2.940e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: A0A067CU13_SAPPC (Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU13_SAPPC)

HSP 1 Score: 196 bits (497), Expect = 2.940e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI+DSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIKDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.940e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: A0A7S3RVL2_9SPIT (Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3RVL2_9SPIT)

HSP 1 Score: 196 bits (497), Expect = 3.030e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: H4_ARATH (Histone H4 n=272 Tax=Eukaryota TaxID=2759 RepID=H4_ARATH)

HSP 1 Score: 195 bits (496), Expect = 4.170e-63
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Match: A0A0D2MLB1_9CHLO (Histone H4 n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0D2MLB1_9CHLO)

HSP 1 Score: 195 bits (496), Expect = 4.170e-63
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENV+RD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig11811.1159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A024G0M5_9STRA	1.020e-63	100.00	Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI...	[more]
H4_SOLLC	1.450e-63	99.03	Histone H4 n=13 Tax=cellular organisms TaxID=13156...	[more]
A0A3L6V663_9STRA	2.070e-63	100.00	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
B7FX68_PHATC	2.940e-63	99.03	Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
C1MUM2_MICPC	2.940e-63	99.03	Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1M...	[more]
A0A067CU13_SAPPC	2.940e-63	99.03	Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepI...	[more]
F0W2L9_9STRA	2.940e-63	99.03	Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID...	[more]
A0A7S3RVL2_9SPIT	3.030e-63	99.03	Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 Re...	[more]
H4_ARATH	4.170e-63	98.06	Histone H4 n=272 Tax=Eukaryota TaxID=2759 RepID=H4...	[more]
A0A0D2MLB1_9CHLO	4.170e-63	98.06	Histone H4 n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig11811	contig	H-paniculata_contig11811:6797..7108 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	198.7
Seed ortholog evalue	1.3e-48
Seed eggNOG ortholog	157072.XP_008863623.1
KEGG ko	ko:K11254
KEGG Pathway	ko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting category	other localisation
GOs	GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG3467@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036
Exons	1
Model size	312
Cds size	312
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928891.507815-CDS-H-paniculata_contig11811:6796..7108	1622928891.507815-CDS-H-paniculata_contig11811:6796..7108	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11811 6797..7108 +
1691480658.6527538-CDS-H-paniculata_contig11811:6796..7108	1691480658.6527538-CDS-H-paniculata_contig11811:6796..7108	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11811 6797..7108 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig11811.1159.1	prot_H-paniculata_contig11811.1159.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig11811 6797..7108 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig11811:6797..7108+
coding sequence from alignment at H-paniculata_contig11811:6797..7108+

protein sequence of mRNA_H-paniculata_contig11811.1159.1

>prot_H-paniculata_contig11811.1159.1 ID=prot_H-paniculata_contig11811.1159.1|Name=mRNA_H-paniculata_contig11811.1159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*

mRNA from alignment at H-paniculata_contig11811:6797..7108+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig11811.1159.1 ID=mRNA_H-paniculata_contig11811.1159.1|Name=mRNA_H-paniculata_contig11811.1159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig11811:6797..7108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGACGCGGAAAGGGCGGAAAGGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGCAAGGTACTTCGTGACAACATCCAGGGTATCACGAAGCCGG
CTATCCGCCGTTTGGCTCGCCGTGGCGGTGTGAAGCGCATCTCTGGGTTG
ATCTACGAGGAAACCCGTGGTGTGCTCAAGGTTTTCCTGGAGAACGTCAT
CCGCGACTCGGTCACTTACACCGAGCACGCTCGCCGGAAGACCGTGACTG
CCATGGACGTGGTGTATGCCCTGAAGCGCCAAGGGCGCACGTTGTATGGC
TTCGGCGGCTAA

Coding sequence (CDS) from alignment at H-paniculata_contig11811:6797..7108+

>mRNA_H-paniculata_contig11811.1159.1 ID=mRNA_H-paniculata_contig11811.1159.1|Name=mRNA_H-paniculata_contig11811.1159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig11811:6797..7108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGACGCGGAAAGGGCGGAAAGGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGCAAGGTACTTCGTGACAACATCCAGGGTATCACGAAGCCGG
CTATCCGCCGTTTGGCTCGCCGTGGCGGTGTGAAGCGCATCTCTGGGTTG
ATCTACGAGGAAACCCGTGGTGTGCTCAAGGTTTTCCTGGAGAACGTCAT
CCGCGACTCGGTCACTTACACCGAGCACGCTCGCCGGAAGACCGTGACTG
CCATGGACGTGGTGTATGCCCTGAAGCGCCAAGGGCGCACGTTGTATGGC
TTCGGCGGCTAAATGTCTGGACGCGGAAAGGGCGGAAAGGGTCTGGGCAA
GGGTGGCGCCAAGCGCCACCGCAAGGTACTTCGTGACAACATCCAGGGTA
TCACGAAGCCGGCTATCCGCCGTTTGGCTCGCCGTGGCGGTGTGAAGCGC
ATCTCTGGGTTGATCTACGAGGAAACCCGTGGTGTGCTCAAGGTTTTCCT
GGAGAACGTCATCCGCGACTCGGTCACTTACACCGAGCACGCTCGCCGGA
AGACCGTGACTGCCATGGACGTGGTGTATGCCCTGAAGCGCCAAGGGCGC
ACGTTGTATGGCTTCGGCGGCTAA