mRNA_H-paniculata_contig4644.11591.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4644.11591.1
Unique NamemRNA_H-paniculata_contig4644.11591.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4644.11591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4644contigH-paniculata_contig4644:3459..4376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size920
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930386.1345017-CDS-H-paniculata_contig4644:3458..39321622930386.1345017-CDS-H-paniculata_contig4644:3458..3932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4644 3459..3932 +
1691481268.1157165-CDS-H-paniculata_contig4644:3458..39321691481268.1157165-CDS-H-paniculata_contig4644:3458..3932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4644 3459..3932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930386.1482677-UTR-H-paniculata_contig4644:3932..43761622930386.1482677-UTR-H-paniculata_contig4644:3932..4376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4644 3933..4376 +
1691481268.1259525-UTR-H-paniculata_contig4644:3932..43761691481268.1259525-UTR-H-paniculata_contig4644:3932..4376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4644 3933..4376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4644.11591.1prot_H-paniculata_contig4644.11591.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4644 3459..3932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4644.11591.1

>prot_H-paniculata_contig4644.11591.1 ID=prot_H-paniculata_contig4644.11591.1|Name=mRNA_H-paniculata_contig4644.11591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
RVVHRHKYRLSGHQEACCSTYSGLLSKDALDAVTSSCNEPHGGSSAKPFS
RTRNSCTQVVYGVGSFCSRTIGRVGVSRSNLNPTAVQSFRPRKRWGYVIL
AFSYRNFKVLSKNFQGISATIWTRTVENCYLHLCCNRPLRRPLPWPQVCA
VCTRSTG*
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mRNA from alignment at H-paniculata_contig4644:3459..4376+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4644.11591.1 ID=mRNA_H-paniculata_contig4644.11591.1|Name=mRNA_H-paniculata_contig4644.11591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=918bp|location=Sequence derived from alignment at H-paniculata_contig4644:3459..4376+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGTCGTACACAGACATAAATATAGGCTATCGGGTCACCAAGAGGCGTG
TTGCTCCACCTACAGCGGTCTGCTGTCGAAGGACGCACTTGATGCGGTTA
CTTCAAGCTGCAACGAACCACACGGCGGGTCAAGTGCCAAACCGTTCTCA
AGGACACGGAACTCTTGTACCCAAGTAGTATATGGTGTAGGATCTTTTTG
CTCAAGAACAATCGGGCGAGTTGGGGTTTCACGTAGCAATCTTAATCCTA
CTGCTGTTCAATCATTCAGGCCCCGAAAACGTTGGGGTTACGTAATTTTG
GCATTTAGCTATCGTAATTTCAAGGTGCTGTCGAAGAACTTTCAGGGCAT
CTCCGCAACCATATGGACGCGTACGGTCGAGAATTGCTATCTGCACCTGT
GCTGTAACCGACCACTTCGCCGTCCGCTCCCCTGGCCACAAGTCTGCGCG
GTGTGCACCCGAAGCACGGGTTGAGAGGTCGATGGGGGAGGGGGAGGGTT
CCTTAACGCGTGCGAGAGTATTGTGTGTTTCGGAAAAACGTTTCATCACT
TGCCTACGGAATGTATTTTATGTGTTCCTCAACGTAGGGTTGGTCGTTGT
GATGGAGCACACACAAGGATTTGCTGCGCATGTGTGGTACGTTTCGCGCA
ATCTGCTGAAACACGGGACAATGACCCGAACGAGAAACGGTGACAATGAA
TATCCATCCGCGCGATGCTGCACCTCTTCAGCGGCGCACGGACAGCTGGA
TTCTTAATGCGAAAAAGAACAGCACCTCTACAGAATGGCGGTTGCACCTA
TGATCGTACGAAATTCGCGAAAATAGCGCCAGTCGAGATAGGTTTATCAA
TGCACCGTTCCATGGTCAGGTTCCCCATGTGTATTTGTATCAGCAGCATA
CCCATCATAGCGCGCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig4644:3459..4376+

>mRNA_H-paniculata_contig4644.11591.1 ID=mRNA_H-paniculata_contig4644.11591.1|Name=mRNA_H-paniculata_contig4644.11591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig4644:3459..4376+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGTCGTACACAGACATAAATATAGGCTATCGGGTCACCAAGAGGCGTG
TTGCTCCACCTACAGCGGTCTGCTGTCGAAGGACGCACTTGATGCGGTTA
CTTCAAGCTGCAACGAACCACACGGCGGGTCAAGTGCCAAACCGTTCTCA
AGGACACGGAACTCTTGTACCCAAGTAGTATATGGTGTAGGATCTTTTTG
CTCAAGAACAATCGGGCGAGTTGGGGTTTCACGTAGCAATCTTAATCCTA
CTGCTGTTCAATCATTCAGGCCCCGAAAACGTTGGGGTTACGTAATTTTG
GCATTTAGCTATCGTAATTTCAAGGTGCTGTCGAAGAACTTTCAGGGCAT
CTCCGCAACCATATGGACGCGTACGGTCGAGAATTGCTATCTGCACCTGT
GCTGTAACCGACCACTTCGCCGTCCGCTCCCCTGGCCACAAGTCTGCGCG
GTGTGCACCCGAAGCACGGGTTGACGCGTCGTACACAGACATAAATATAG
GCTATCGGGTCACCAAGAGGCGTGTTGCTCCACCTACAGCGGTCTGCTGT
CGAAGGACGCACTTGATGCGGTTACTTCAAGCTGCAACGAACCACACGGC
GGGTCAAGTGCCAAACCGTTCTCAAGGACACGGAACTCTTGTACCCAAGT
AGTATATGGTGTAGGATCTTTTTGCTCAAGAACAATCGGGCGAGTTGGGG
TTTCACGTAGCAATCTTAATCCTACTGCTGTTCAATCATTCAGGCCCCGA
AAACGTTGGGGTTACGTAATTTTGGCATTTAGCTATCGTAATTTCAAGGT
GCTGTCGAAGAACTTTCAGGGCATCTCCGCAACCATATGGACGCGTACGG
TCGAGAATTGCTATCTGCACCTGTGCTGTAACCGACCACTTCGCCGTCCG
CTCCCCTGGCCACAAGTCTGCGCGGTGTGCACCCGAAGCACGGGTTGA
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