mRNA_H-paniculata_contig46414.11589.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46414.11589.1
Unique NamemRNA_H-paniculata_contig46414.11589.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.240e-31
Identity = 63/89 (70.79%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 ACLSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLFDRDSTPLDDLEGVEV 267
            A L  VHGRTV   KT+QG ANWDIIR+VKE   IPVV NGG+ T ADAE+LLE TGADAVMSSEGLLE+P+LFDRD  P+++L+GVEV
Sbjct:  248 AQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVAGIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDRDLIPIEELQGVEV 336          
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: D7G7Q4_ECTSI (Dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q4_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.080e-30
Identity = 61/89 (68.54%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 ACLSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLFDRDSTPLDDLEGVEV 267
            A L  VHGRTV   KT+QG A+WDIIR+VKE V IPVV NGG+ T ADAE+LLE TGADAVMSSEGLLE+P+LFD D  P+++L+G+EV
Sbjct:  248 AQLLTVHGRTVSSQKTKQGAADWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLIPMEELQGLEV 336          
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: A0A836CKE0_9STRA (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.930e-25
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    7 LSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLFDRDSTPLDDLEG 258
            L  VHGRTVR AKT  G A+W IIR+VK A+ IPVV NGG+ T ADAE+ L +TGADA+MSSE LLEDP+LFDR    L ++ G
Sbjct:  164 LITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSG 247          
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: M4BQW3_HYAAE (Dus domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQW3_HYAAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.520e-21
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    7 LSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLF-DRDSTPLDDLEGVEVCMLIYLFFSALY 303
            L  VHGRT    KT  G  NWDIIR++KE +SIPV+ NGGV T  D  + LE TG D VMSSEG+LE+P+LF D ++TP  D   +E+    YL F+ L+
Sbjct:   78 LLTVHGRTKEMNKTAVGAINWDIIRRIKEQLSIPVIANGGVETHEDIARCLEATGCDGVMSSEGVLENPALFADGNNTPGTDTSFLELARQ-YLEFATLH 176          
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: D0NNQ3_PHYIT (tRNA-dihydrouridine synthase n=25 Tax=Phytophthora TaxID=4783 RepID=D0NNQ3_PHYIT)

HSP 1 Score: 90.9 bits (224), Expect = 3.550e-19
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    7 LSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLF-DRDSTPLDDLEGVEV 267
            L  VHGRT    KT     NWDIIR++KE ++IPV+ NGG+ T  D  + LE TG D VMSSEGLLE+P+LF D ++TP +D   +E+
Sbjct:  176 LLTVHGRTKEMNKTAVREVNWDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFADTNNTPGEDTSFLEL 263          
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: A0A7S3UVI5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI5_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 1.210e-18
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 ACLSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLFD 225
            A L  +HGRTV Q+KT  G A+W++IR VK+ V IPV+ NGG+    D ++ L++TGADAVMSSE LLE+P LFD
Sbjct:  159 AQLLCLHGRTVEQSKTNAGSADWEVIRLVKQEVDIPVIANGGIENFDDVQRCLQITGADAVMSSEALLENPMLFD 233          
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: A0A061S1R0_9CHLO (tRNA-dihydrouridine synthase 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S1R0_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 1.260e-18
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 ACLSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLFDRDSTPLDDLEGVEVCMLI--YLFFSALYLSTLEILFRKLTKKKVLGNW 363
            A L  +HGRT  Q   ++  A+W +IR VK+A+ IPV+GNG VR + DA++++  TGAD VMS+E LLEDP+LF  D T        E C L+  YL  +  Y + + ++  K    ++LGNW
Sbjct:  211 AHLLAIHGRTRDQKNAKEIRADWGVIRAVKQALHIPVIGNGNVRHKQDADRMMRETGADGVMSAEALLEDPALFAPDRTDGRVASSAERCDLLVEYLELAGEYPTPMRMV--KAHVHRLLGNW 331          
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: A0A7S2C8F7_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8F7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.380e-18
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 ACLSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLFDRDSTPLDDLEGVE 264
            A +  VHGRTV+Q K     A+W ++R V+EA++IPVV NGG+ T +DA + L  TGAD VMSSE LLE+P LF +++    DL G E
Sbjct:  224 AAMVTVHGRTVKQNKNLSERADWSVVRAVREALTIPVVANGGIETTSDALRCLVETGADMVMSSEALLENPGLFQQNTDHSQDLVGSE 311          
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: A0A3R7YT01_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7YT01_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.820e-18
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    7 LSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLF-DRDSTPLDDLEGVEVCMLIYLFFSALY 303
            L  VHGRT    KT     NWDIIR++KE +SIPV+ NGG+ T  D  + LE TG D VMSSEGLLE+P+LF D ++ P  D   +++    YL ++ LY
Sbjct:  177 LLTVHGRTKEMNKTAVQEVNWDIIRRIKERLSIPVIANGGLETHEDIARCLEATGCDGVMSSEGLLENPALFADSNNKPGQDTSFLQLARQ-YLEYATLY 275          
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Match: A0A3R7K0W9_9STRA (tRNA-dihydrouridine synthase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0W9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.460e-18
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    7 LSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAEQLLEVTGADAVMSSEGLLEDPSLF-DRDSTPLDDLEGVEVCMLIYLFFSALY 303
            L  VHGRT    KT     +WDIIR++KE +SIPV+ NGG+    D  + LE TG D VMSSEGLLE+P+LF + D+TP +D   +E+    YL ++ LY
Sbjct:  178 LLTVHGRTKEMNKTAVREVDWDIIRRIKERLSIPVIANGGLEIPEDIARCLEATGCDGVMSSEGLLENPALFAETDNTPGNDTSFMELAKK-YLGYATLY 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46414.11589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD10_9PHAE2.240e-3170.79Reverse transcriptase domain-containing protein n=... [more]
D7G7Q4_ECTSI1.080e-3068.54Dihydrouridine synthase n=1 Tax=Ectocarpus silicul... [more]
A0A836CKE0_9STRA2.930e-2563.10tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tr... [more]
M4BQW3_HYAAE7.520e-2152.00Dus domain-containing protein n=1 Tax=Hyaloperonos... [more]
D0NNQ3_PHYIT3.550e-1952.27tRNA-dihydrouridine synthase n=25 Tax=Phytophthora... [more]
A0A7S3UVI5_HETAK1.210e-1857.33Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A061S1R0_9CHLO1.260e-1842.28tRNA-dihydrouridine synthase 1 n=1 Tax=Tetraselmis... [more]
A0A7S2C8F7_9STRA1.380e-1851.14Hypothetical protein n=3 Tax=Dictyocha speculum Ta... [more]
A0A3R7YT01_9STRA1.820e-1849.00tRNA-dihydrouridine synthase n=1 Tax=Peronospora e... [more]
A0A3R7K0W9_9STRA3.460e-1849.00tRNA-dihydrouridine synthase n=3 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46414contigH-paniculata_contig46414:809..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue6.2e-26
Seed eggNOG ortholog2880.D7G7Q4
KEGG koko:K05542
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2335@2759
EC1.3.1.88
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930386.0973601-CDS-H-paniculata_contig46414:808..11711622930386.0973601-CDS-H-paniculata_contig46414:808..1171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46414 809..1171 +
1691481268.1057801-CDS-H-paniculata_contig46414:808..11711691481268.1057801-CDS-H-paniculata_contig46414:808..1171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46414 809..1171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46414.11589.1prot_H-paniculata_contig46414.11589.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46414 809..1171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46414.11589.1

>prot_H-paniculata_contig46414.11589.1 ID=prot_H-paniculata_contig46414.11589.1|Name=mRNA_H-paniculata_contig46414.11589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
ACLSKVHGRTVRQAKTQQGMANWDIIRQVKEAVSIPVVGNGGVRTRADAE
QLLEVTGADAVMSSEGLLEDPSLFDRDSTPLDDLEGVEVCMLIYLFFSAL
YLSTLEILFRKLTKKKVLGNW
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mRNA from alignment at H-paniculata_contig46414:809..1171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46414.11589.1 ID=mRNA_H-paniculata_contig46414.11589.1|Name=mRNA_H-paniculata_contig46414.11589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig46414:809..1171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGCTTGTCGAAAGTTCATGGACGTACTGTTCGGCAGGCAAAGACTCA GCAAGGGATGGCAAACTGGGATATAATCCGCCAAGTGAAGGAGGCCGTTT CGATCCCAGTCGTGGGAAATGGGGGCGTTCGAACGAGGGCAGATGCGGAA CAGCTGTTGGAGGTCACCGGGGCAGACGCCGTCATGTCGTCAGAAGGTCT ACTGGAGGATCCGTCGCTGTTTGACCGGGATAGCACCCCCTTGGATGATC TTGAGGGTGTCGAGGTGTGTATGTTGATTTATTTATTTTTTTCCGCTTTA TATCTGTCAACTCTTGAGATTTTATTCAGAAAATTAACAAAAAAAAAAGT GCTTGGAAACTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig46414:809..1171+

>mRNA_H-paniculata_contig46414.11589.1 ID=mRNA_H-paniculata_contig46414.11589.1|Name=mRNA_H-paniculata_contig46414.11589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig46414:809..1171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGCTTGTCGAAAGTTCATGGACGTACTGTTCGGCAGGCAAAGACTCA
GCAAGGGATGGCAAACTGGGATATAATCCGCCAAGTGAAGGAGGCCGTTT
CGATCCCAGTCGTGGGAAATGGGGGCGTTCGAACGAGGGCAGATGCGGAA
CAGCTGTTGGAGGTCACCGGGGCAGACGCCGTCATGTCGTCAGAAGGTCT
ACTGGAGGATCCGTCGCTGTTTGACCGGGATAGCACCCCCTTGGATGATC
TTGAGGGTGTCGAGGTGTGTATGTTGATTTATTTATTTTTTTCCGCTTTA
TATCTGTCAACTCTTGAGATTTTATTCAGAAAATTAACAAAAAAAAAAGT
GCTTGGAAACTGGGCGTGCTTGTCGAAAGTTCATGGACGTACTGTTCGGC
AGGCAAAGACTCAGCAAGGGATGGCAAACTGGGATATAATCCGCCAAGTG
AAGGAGGCCGTTTCGATCCCAGTCGTGGGAAATGGGGGCGTTCGAACGAG
GGCAGATGCGGAACAGCTGTTGGAGGTCACCGGGGCAGACGCCGTCATGT
CGTCAGAAGGTCTACTGGAGGATCCGTCGCTGTTTGACCGGGATAGCACC
CCCTTGGATGATCTTGAGGGTGTCGAGGTGTGTATGTTGATTTATTTATT
TTTTTCCGCTTTATATCTGTCAACTCTTGAGATTTTATTCAGAAAATTAA
CAAAAAAAAAAGTGCTTGGAAACTGG
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